| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 3556942 = | NA (NA) | 6 (0.020) | 5/98 | NT | NA | noncoding (1/98 nt) | RIP256 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP256 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | CP009273 | 3556967 = | NA (NA) | noncoding (26/98 nt) | RIP256 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP256 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
Only 100 of 162 total aligned reads displayed.
TCTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCCTGATAAGCGTAGCGCATCAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/3557015‑3556942‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcaggcCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACGTCGCA > CP009273/3556967‑3557033 TCTGGCCTACAAGACCATGCAAATTCAATATATTGCATAACCCACGTAGGCCTGATAAGCGTAGCGCA > 1:24862386/1‑68TCTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCCTGATAAGCGTAGCGCA > 1:2834576/1‑68TCTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCCTGATAAGCGTAGCGCA > 1:19404528/1‑68TCTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCCTGATAAGCGTAGCGCA > 1:19726978/1‑68TCTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCCTGATAAGCGTAGCGCA > 1:22500155/1‑68TCTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCCTGATAAGCGTAGCGCA > 1:23362774/1‑68TCTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCCTGATAAGCGTAGCGCA > 1:23503713/1‑68TCTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCCTGATAAGCGTAGCGCA > 1:17018438/1‑68TCTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCCTGATAAGCGTAGCGCA > 1:14244213/1‑68TCTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCCTGATAAGCGTAGCGCA > 1:14192871/1‑68TCTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCCTGATAAGCGTAGCGCA > 1:30066238/1‑68TCTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCCTGATAAGCGTAGCGCA > 1:7099777/1‑68TCTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCCTGATAAGCGTAGCGCA > 1:32071988/1‑68 CTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCCTGATAAGCGTAGCGCA > 1:10706464/1‑67 CTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCCTGATAAGCGTAGCGCA > 1:18546692/1‑67 CTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCCTGATAAGCGTAGCGCA > 1:5662108/1‑67 CTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCCTGATAAGCGTAGCGCA > 1:30665655/1‑67 CTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCCTGATAAGCGTAGCGCA > 1:6155303/1‑67 CTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCCTGATAAGCGTAGCGCA > 1:11224394/1‑67 TGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCCTGATAAGCGTAGCGCATC > 1:19955594/1‑68 TGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCCTGATAAGCGTAGCGCATC > 1:18605768/1‑68 TGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCCTGATAAGCGTAGCGCATC < 1:6293322/68‑1 GGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCCTGATAAGCGTAGCGCATCA > 1:12014830/1‑68 GCCTACAAGACCATGCAAATTCAATAGATTGCATAAACCACGTAGGCCTGATAAGCGTAGCGCATCAG > 1:14640709/1‑68 CCTACAAGACCATGCAAATTCAATATATTGCATAAACTACGTAGGCCTGATAAGCGTAGCGCATCAG > 1:22291107/1‑67 CCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCCTGATAAGCGTAGCGCATCAG < 1:2423790/67‑1 CCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCCTGATAAGCGTAGCGCATCAG > 1:25940421/1‑67 CCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCCTGATAAGCGTAGCGCATCAG > 1:27108208/1‑67 CCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCCTGATAAGCGTAGCGCATCAG < 1:10331467/67‑1 CCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCCTGATAAGCGTAGCGCATCAG > 1:3807476/1‑67 CCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCCTGATAAGCGTAGCGCATCAG > 1:29272705/1‑67 CCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCCTGATAAGCGTAGCGCATCAG > 1:18036417/1‑67 CCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCCTGATAAGCGTAGCGCATCAG > 1:1402401/1‑67 CCTACAAGACCATGCAAATTCAATAAATTCCATAAACCACCTAGGCCTGATAACAGAAGCGCATCAG > 1:16087004/1‑67 CTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCCTGATAAGCGTAGCGCATCAGGC > 1:32110/1‑68 AAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCCTGATAAGCGTAGCGCATCAGG > 1:5857559/1‑63 CGTAGGCCTGATAAGCGTAGCGCATCAGGCCTACGTGGTTTACGCAATATATTGAATTTGCATGGTCT < 1:21664054/68‑1 CCTGATAAGCGTAGCGCATCAGGCCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAG < 1:9607419/67‑1 CTGAAAAGCGTACCGCAGCAGGCCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGG < 1:1769371/67‑1 aAAGCGTAGCGCATCACGCCTACGGGGTTTATTCAATATATTGAATTTGCATGGTCTTGTGGGCCAG < 1:2304047/66‑1 TAAGCGTAGCGCATCAGGCCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAG < 1:3377850/67‑1 GCATCAGGCCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTC > 1:27742203/1‑68 TCAGGCCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACG > 1:16583396/1‑68 TCAGGCCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACG > 1:29920194/1‑68 TCAGGCCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACG > 1:13668387/1‑68 TCAGGCCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACG > 1:13430302/1‑68 TCAGGCCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACG < 1:5481409/68‑1 TCAGGCCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACG < 1:5525442/68‑1 TCAGGCCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACG > 1:11966687/1‑68 TCAGGCCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACG > 1:7241/1‑68 TCAGGCCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACG > 1:7248202/1‑68 TCAGGCCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACG > 1:17622210/1‑68 TCAGGCCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACG > 1:19689159/1‑68 TCAGGCCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACG < 1:19793590/68‑1 TCAGGCCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACG > 1:18996326/1‑68 TCAGGCCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACG > 1:22128022/1‑68 TCAGGCCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACG > 1:20744189/1‑68 TCAGGCCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTA > 1:4466028/1‑48 TCAGGCCTACGGGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACG < 1:8946370/68‑1 CAGGCCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACGT < 1:1924926/68‑1 AGGCCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACGTC > 1:599088/1‑68 AGGCCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACGTC > 1:561309/1‑68 GGCCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCCCGTC > 1:26728047/1‑67 GGCCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACGTC > 1:17510247/1‑67 GGCCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACGTC > 1:20468401/1‑67 GGCCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACGTC > 1:21208518/1‑67 CCTACGTGGTTTATGCAATATATTGAATTTTCATGGTCTTGTAGGCCAGATAAGACGTTCAAGTCGCA > 1:8251872/1‑68 CCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCCCGTCGCA > 1:4423467/1‑68 CCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACGTCGCA > 1:27983196/1‑68 CCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACGTCGCA > 1:24364520/1‑68 CCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACGTCGCA > 1:886389/1‑68 CCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACGTCGCA > 1:7779551/1‑68 CCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACGTCGCA > 1:15643295/1‑68 CCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACGTCGCA > 1:10034806/1‑68 CCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACGTCGCA > 1:10709540/1‑68 CCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACGTCGCA > 1:271701/1‑68 CCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACGTCGCA > 1:27521066/1‑68 CCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACGTCGCA > 1:19929926/1‑68 CCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACGTCGCA > 1:12287260/1‑68 CCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACGTCGCA > 1:17643894/1‑68 CCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACGTCGCA > 1:21841486/1‑68 CCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACGTCGCA > 1:1447554/1‑68 CCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACGTCGCA > 1:1310910/1‑68 CCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACGTCGCA > 1:30229889/1‑68 CCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACGTCGCA > 1:21608422/1‑68 CCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACGTCGCA > 1:30893436/1‑68 CCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACGTCGCA > 1:31170608/1‑68 CCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACGTCGCA > 1:31708310/1‑68 CCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACGTCGCA > 1:5352474/1‑68 CCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACGTCGCA > 1:19379763/1‑68 CCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACGTCGCA > 1:29413319/1‑68 CCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACGTCGCA > 1:12717709/1‑68 CCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACGTCGCA > 1:4059442/1‑68 CCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACGTCGCA > 1:424327/1‑68 CCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACGTCGCA > 1:2887502/1‑68 CCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACGTCGCA > 1:4927514/1‑68 CCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACGTCGC < 1:6310243/67‑1 CCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACGTCGC < 1:7942531/67‑1 CCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACCTCGCA > 1:24863582/1‑68 CCTACGAGGTTTATCCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACCTTCACGTCGCA > 1:19153837/1‑68 TCTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCCTGATAAGCGTAGCGCATCAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/3557015‑3556942‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcaggcCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACGTCGCA > CP009273/3556967‑3557033 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |