| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 3556942 = | NA (NA) | 6 (0.020) | 5/98 | NT | NA | noncoding (1/98 nt) | RIP256 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP256 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | CP009273 | 3556967 = | NA (NA) | noncoding (26/98 nt) | RIP256 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP256 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
Only 100 of 916 total aligned reads displayed.
GTAAATTAACGTAAGGTGATCAGGTCAGATTTCAATCTGGCCTGAGACTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAG > CP009273/3556875‑3557009 | tgcgccgtgaacgtcttatctggcctacaagaccatgcaaattcaatatattgcataaaccacgtagg > 1:22023894‑M1/68‑68 (MQ=255)tgcgacgtgaacgtcttatctggcctacaagaccatgcaaattcaatatattgcataaaccacgtagg > 1:9642430‑M1/68‑68 (MQ=255)tgcgacgtgaacgtcttatctggcctacaagaccatgcaaattcaatatattgcataaaccacgtagg > 1:21608422‑M1/68‑68 (MQ=255)tgcgacgtgaacgtcttatctggcctacaagaccatgcaaattcaatatattgcataaaccacgtagg > 1:17643894‑M1/68‑68 (MQ=255)tgcgacgtgaacgtcttatctggcctacaagaccatgcaaattcaatatattgcataaaccacgtagg > 1:7779551‑M1/68‑68 (MQ=255)tgcgacgtgaacgtcttatctggcctacaagaccatgcaaattcaatatattgcataaaccacgtagg > 1:29413319‑M1/68‑68 (MQ=255)tgcgacgtgaacgtcttatctggcctacaagaccatgcaaattcaatatattgcataaaccacgtagg > 1:2974104‑M1/68‑68 (MQ=255)tgcgacgtgaacgtcttatctggcctacaagaccatgcaaattcaatatattgcataaaccacgtagg > 1:12287260‑M1/68‑68 (MQ=255)tgcgacgtgaacgtcttatctggcctacaagaccatgcaaattcaatatattgcataaaccacgtagg > 1:4059442‑M1/68‑68 (MQ=255)tgcgacgtgaacgtcttatctggcctacaagaccatgcaaattcaatatattgcataaaccacgtagg > 1:4927514‑M1/68‑68 (MQ=255) aaTTAACGTAAGGTGATCAGGTCAGATTTCAATCTGGCCTGAGACTGATGACAAACACAATACTGCCt < 1:19439154/68‑1 (MQ=255) ttAACGTAAGGTGATCAGGTCAGATTTCAATCTGGCCTGAGACTGATGACAAACACAAAACTGCCTGa > 1:26018342/1‑68 (MQ=255) cgtgaacgtcttatctggcctacaagaccatgcaaattcaatatattgcataaaccacgtagGCCTGa < 1:4410472‑M1/6‑1 (MQ=255) cgtgaacgtcttatctggcctacaagaccatgcaaattcaatatattgcataaaccacgtagGCCTGa > 1:7241‑M1/63‑68 (MQ=255) cgtgaacgtcttatctggcctacaagaccatgcaaattcaatatattgcataaaccacgtagGCCTGa > 1:20744189‑M1/63‑68 (MQ=255) aaCGTAAGGTGATCAGGTCAGATTTCAATCTGGCCTGAGACTGATGACAAACACAAAACTGCCTGAt > 1:14094211/1‑67 (MQ=255) aaCGTAAGGTGATCAGGTCAGATTTCAATCTGGCCTGAGACTGATGACAAACACAAAACTGCCTGAt > 1:3711087/1‑67 (MQ=255) aaCGTAAGGTGATCAGGTCAGATTTCAATCAGGCCTGAGACTGATGACAAACACAAAACTGCCTGAt > 1:9016437/1‑67 (MQ=255) aCGTAAGGTGATCAGGTCAGATTTCAATCTGGCCTGAGACTGATGACAAACACAAAACTGCCTGATgc < 1:31369506/68‑1 (MQ=255) gTAAGGTGATCAGGTCAGATTTCAATCTGGCCTGAGACTGATGACAAACACAAAACTGCCTGATgc > 1:10526637/1‑66 (MQ=255) aGGTGATCAGGTCAGATTTCAATCTGGCCTGAGACTGATGACAAACACAAAACTGCCTGATGCGCTAc < 1:31817017/68‑1 (MQ=255) aGGTGATCAGGTCAGATTTCAATCTGGCCTGAGACTGATGACAAACACAAAACTGCCTGATGCGCTAc < 1:4660562/68‑1 (MQ=255) aGGTGATCAGGTCAGATTTCAATCTGGCCTGAGACTGATGACAAACACAAAACTGCCTGATGCGCTAc < 1:212163/68‑1 (MQ=255) aGGTGATCAGGTCAGATTTCAATCTGGCCTGAGACTGATGACAAACACAAAACTGCCTGATGCGCTAc < 1:5442288/68‑1 (MQ=255) ggTGATCAGGTCAGATTTCAATCTGGCCTGAGACTGATGACAAACACAAAACTGCCTGATGCGCTAc > 1:12525917/1‑67 (MQ=255) ggTGATCAGGTCAGATTTCAATCTGGCCTGAGACTGATGACAAACACAAAACTGCCTGATGCGCTAc > 1:2665955/1‑67 (MQ=255) ggTGATCAGGTCAGATTTCAATCTGGCCTGAGACTGATGACAAACACAAAACTGCCTGATGCGCTAc > 1:25796295/1‑67 (MQ=255) ggTGATCAGGTCAGATTTCAATCTGGCCTGAGACTGATGACAAACACAAAACTGCCTGATGCGCTAc > 1:877143/1‑67 (MQ=255) gTGATCAGGTCAGATTTCAATCTGGCCTGAGACTGATGACAAACACAAAACTGCCTGATGCGCTAc > 1:5607129/1‑66 (MQ=255) tCAGGTCAGATTTCAATCTGGCCTGAGACTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTa < 1:22289840/67‑1 (MQ=255) tCAGGTCAGATTTCAATCTGGCCTGAGACTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTa > 1:675198/1‑67 (MQ=255) tCAGGTCAGATTTCAATCTGGCCTGAGACTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTa < 1:20202864/67‑1 (MQ=255) tCAGGTCAGATTTCAATCTGGCCTGAGACTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTa < 1:1975537/67‑1 (MQ=255) tCAGGTCAGATTTCAATCTGGCCTGAGACTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTa < 1:23773465/67‑1 (MQ=255) tCAGGTCAGATTTCAATCTGGCCTGAGACTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTa > 1:1314353/1‑67 (MQ=255) ggTCAGATTTCAATCTGGCCTGAGACTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAg > 1:12700365/1‑68 (MQ=255) gTCAGATTTCAATCTGGCCTGAGACTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAg > 1:344745/1‑67 (MQ=255) tCAGATTTCAATCTGGCCTGAGACTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAgg < 1:15453771/67‑1 (MQ=255) tCAGATTTCAATCTGGCCTGAGACTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAgg < 1:8223887/67‑1 (MQ=255) tCAGATTTCAATCTGGCCTGAGACTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAgg < 1:30518880/67‑1 (MQ=255) tCAGATTTCAATCTGGCCTGAGACTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAgg < 1:5957978/67‑1 (MQ=255) tCAGATTTCAATCTGGCCTGAGACTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAgg < 1:15288695/67‑1 (MQ=255) tttCAATCTGGCCTGAGACTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAGGCCTa < 1:8371986/66‑1 (MQ=255) tttCAATCTGGCCTGAGACTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAGGCCTAc < 1:18604910/67‑1 (MQ=255) tttCAATCTGGCCTGAGACTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAGGCCTAc < 1:22703598/67‑1 (MQ=255) cAATCTGGCCTGAGACTGATGACAAACACAAAACTGCCTGATGCGCTACTCTTATCAGGCCTACGTgg < 1:25318738/68‑1 (MQ=255) cAATCTGGCCTGAGACTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTgg < 1:5255387/68‑1 (MQ=255) cAATCTGGCCTGAGACTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTgg < 1:12958920/68‑1 (MQ=255) cAATCTGGCCTGAGACTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTgg < 1:30762638/68‑1 (MQ=255) cAATCTGGCCTGAGACTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTgg < 1:11688698/68‑1 (MQ=255) cAATCTGGCCTGAGACTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTgg < 1:30240645/68‑1 (MQ=255) cAATCTGGCCTGAGACTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTgg < 1:19088665/68‑1 (MQ=255) cAATCTGGCCTGAGACTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTgg < 1:29091732/68‑1 (MQ=255) cAATCTGGCCTGAGACTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTgg < 1:2884160/68‑1 (MQ=255) cAATCTGGCCTGAGACTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTgg < 1:27943136/68‑1 (MQ=255) cAATCTGGCCTGAGACTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTgg < 1:24331237/68‑1 (MQ=255) attCTGGCCTGAGACTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGt < 1:21780727/66‑1 (MQ=255) aTCTGGCCTGAGACTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGtt > 1:22513685/1‑68 (MQ=255) tCTGGCCTGAGACTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGttt > 1:10799451/1‑68 (MQ=255) tGGCCTGAGACTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGTTTAt < 1:20875098/68‑1 (MQ=255) tGGCCTGAGACTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGTTTAt < 1:2326612/68‑1 (MQ=255) gCCTGAGACTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGTTTATGc > 1:16935845/1‑68 (MQ=255) ccTGAGACTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGTTTATGc < 1:31540097/67‑1 (MQ=255) tGAGACTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGTTTATGCAat < 1:26769393/68‑1 (MQ=255) gaCTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGTTTATGCAatata > 1:17481374/1‑68 (MQ=255) gaCTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGTTTATGCAatata > 1:9253339/1‑68 (MQ=255) gaCTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGTTTATGCAatat < 1:13659795/67‑1 (MQ=255) gaCTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGTTTATGCAatat < 1:2509101/67‑1 (MQ=255) gaCTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGTTTATGCAatat < 1:24573518/67‑1 (MQ=255) gaCTGATGACAAACACAAAACAGCCTGATGCGCTACGCTTATCAGGCCTACGTGGTATAACCtatata > 1:1003264/1‑68 (MQ=14) aCTGATGTCAAACACAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGTTTATGCAatatat > 1:7556298/1‑68 (MQ=255) aCTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGTTTATGCAatatat > 1:24085601/1‑68 (MQ=255) aCTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGTTTATGCAatatat > 1:28279107/1‑68 (MQ=255) aCTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGTTTATGCAatatat > 1:20515528/1‑68 (MQ=255) aCTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGTTTATGCAatatat > 1:13373554/1‑68 (MQ=255) aCTGATGACAAACACAAAACTGCCTGATGCGCCACGCTTATCAGGCCTACGTGGTTTATGCAatatat > 1:18864642/1‑68 (MQ=255) gatgaCAAACAGAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGTTTATGCAATATATTGa < 1:11130731/68‑1 (MQ=255) gatgaCAAACACAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGTTTATGCAATATATTGa < 1:18002294/68‑1 (MQ=255) gatgaCAAACACAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGTTTATGCAATATATTGa < 1:2858830/68‑1 (MQ=255) tgaCAAACACAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGTTTATGCAATATATTGaa < 1:6307052/67‑1 (MQ=255) tgaCAAACACAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGTTTATGCAATATATTGaa < 1:16396827/67‑1 (MQ=255) tgaCAAACACAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGTTTATGCAATATATTGAAt > 1:14339194/1‑68 (MQ=255) gaCAAACACAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGTTTATGCAATATATTGAAtt > 1:11454014/1‑68 (MQ=255) acaAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGTTTATGCAATATATTGAATTTGCATgg > 1:19353485/1‑68 (MQ=255) caAAACTTCCTGATGCTCTACGCTTATCAGGCCTACGTGGTTTATGCAATATATTGAATTTGCATTGt < 1:1574170/68‑1 (MQ=14) caAAACTGCCTGCTGCGCTACGCTTATCAGGCCTACGTGGTTTATGCAATATATTGAATTTGCATGGt < 1:23084952/68‑1 (MQ=255) caAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGTTTATGCAATATATTGAATTTGCATGGt < 1:29954016/68‑1 (MQ=255) caAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGTTTATGCAATATATTGAATTTGCATGGt < 1:27419216/68‑1 (MQ=255) caAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGTTTATGCAATATATTGAATTTGCATGGt < 1:2725657/68‑1 (MQ=255) caAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGTTTATGCAATATATTGAATTTGCATGGt < 1:6582072/68‑1 (MQ=255) caAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGTTTATGCAATATATTGAATTTGCATGGt < 1:26304147/68‑1 (MQ=255) caAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGTTTATGCAATATATTGAATTTGCATGGt < 1:19954842/68‑1 (MQ=255) aaaCTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCt < 1:12031430/68‑1 (MQ=255) aaaCTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCt < 1:15984901/68‑1 (MQ=255) aaaCTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCt < 1:16758189/68‑1 (MQ=255) aaCTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCtt < 1:14885860/68‑1 (MQ=255) aCTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTg > 1:18273809/1‑68 (MQ=255) aCTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTg > 1:13884648/1‑68 (MQ=255) aCTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTg > 1:10225027/1‑68 (MQ=255) aCTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGTGTATGCAATATATTGAATTTGCATGGTCTTg > 1:30962869/1‑68 (MQ=255) | GTAAATTAACGTAAGGTGATCAGGTCAGATTTCAATCTGGCCTGAGACTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAG > CP009273/3556875‑3557009 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |