| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 3803672 = | NA (NA) | 4 (0.010) | 3/94 | NT | NA | noncoding (1/22 nt) | REP274 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP274 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | CP009273 | 3803694 = | NA (NA) | intergenic (+30/+9) | coaD/mutM | pantetheine‑phosphate adenylyltransferase/formamidopyrimidine/5‑formyluracil/ 5‑hydroxymethyluracil DNA glycosylase | |||||
Only 100 of 115 total aligned reads displayed.
CATGCGCAGCGGGCAACGTTTTATTGTCGGCAGTGCCAGAAGTAATTCATGCGCGCCGGATGGCATACCATCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/3803747‑3803672‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccatccggcGCGCATGAATTACTTCTGGCACTGCCGACAATAAAACGTTGCCCGCTGCGCATGTTTAGTCGCCAC > CP009273/3803694‑3803759 CATGCGCAGC‑GGCAACGTTTTATTGTCGGCAGTGCCAGAAGTAATTCATGCGCGCCGGATGGCATACC > 1:2209952/1‑68 acGCGCAGCGGGCAACGTTTTATTGTCGGCAGTGCCAGAAGTAATTCATGCGCGCCGGATGGCATACC < 1:14851935/66‑1 ATGCGCAGCGGGCAACGTTTTATTGTCGGCAGTGCCAGAAGTAATTCATGCGCGCCGGATGGCATACC > 1:9562013/1‑68 CGCAGCGGGCAACGTTTTATTGTCGGCAGTGCCAGAAGTAATTCATGCGCGCCGGATGGCATACCAT > 1:71302/1‑67 CGCAGCGGGCAACGTTTTATTGTCGGCAGTGCCAGAAGTAATTCATGCGCGCCGGATGGCATACCAT > 1:5940980/1‑67 CGCAGCGGGCAACGTTTTATTGTCGGCAGTGCCAGAAGTAATTCATGCGCGCCGGATGGCATACCAT > 1:4583597/1‑67 CGCAGCGGGCAACGTTTTATTGTCGGCAGTGCCAGAAGTAATTCATGCGCGCCGGATGGCATACCAT > 1:19270791/1‑67 CGCAGCGGGCAACGTTTTATTGTCGGCAGTGCCAGAAGTAATTCATGCGCGCCGGATGGCATACCAT > 1:7935633/1‑67 CGCAGCGGGCAACGTTTTATTGTCGGCAGTGCCAGAAGTAATTCATGCGCGCCGGATGGCATACCAT > 1:15642632/1‑67 CGCAGCGGGCAACGTTTTATTGTCGGCAGTGCCAGAAGTAATTCATGCGCGCCGGATGGCATACCAT > 1:15487577/1‑67 CGCAGCGGGCAACGTTTTATTGTCGGCAGTGCCAGAAGTAATTCATGCGCGCCGGATGGCATACCAT > 1:29275686/1‑67 CGCAGCGGGCAACGTTTTATTGTCGGCAGTGCCAGAAGTAATTCATGCGCGCCGGATGGCATACCAT > 1:28270940/1‑67 GCAGCGGGCAACGTTTTATTGTCGGCAGTGCCAGAAGTAATTCATGCGCGCCGGATGGCATACCATCC > 1:28620911/1‑68 GCAGCGGGCAACGTTTTATTGTCGGCAGTGCCAGAAGTAATTCATGCGCGCCGGATGGCATACCATCC > 1:9522261/1‑68 GCAGCGGGCAACGTTTTATTGTCGGCAGTGCCAGAAGTAATTCATGCGCGCCGGATGGCATACCATCC > 1:2024952/1‑68 GCAGCGGGCAACGTTTTATTGTCGGCAGTGCCAGAAGTAATTCATGCGCGCCGGATGGCATACCATCC > 1:22720940/1‑68 GCAGCGGGCAACGTTTTATTGTCGGCAGTGCCAGAAGTAATTCATGCGCGCCGGATGGCATACCATCC > 1:1023437/1‑68 GCAGCGGGCAACGTTTTATTGTCGGCAGTGCCAGAAGTAATTCATGCGCGCCGGATGGCATACCATCC > 1:29281842/1‑68 GCAGCGGGCAACGTTTTATTGTCGGCAGTGCCAGAAGTAATTCATGCGCGCCGGATGGCATACCATCC > 1:31640397/1‑68 GCAGCGGGCAACGTTTTATTGTCGGCAGTGCCAGAAGTAATTCATGCGCGCCGGATGGCATACCATCC > 1:4026974/1‑68 GCAGCGGGCAACGTTTTATTGTCGGCAGTGCCAGAAGTAATTCATGCGCGCCGGATGGCATACCATCC > 1:6704290/1‑68 GCAGCGGGCAACGTTTTATTGTCGGCAGTGCCAGAAGTAATTCATGCGCGCCGGATGGCATACCATCC > 1:6959906/1‑68 GCAGCGGGCAACGTTTTATTGTCGGCAGTGCCAGAAGTAATTCATGCGCGCCGGATGGCATACCATCC > 1:15723855/1‑68 GCAGCGGGCAACGTTTTATTGTCGGCAGTGCCAGAAGTAATTCATGCGCGCCGGATGGCATACCATCC > 1:14735197/1‑68 GCAGCGGGCAACGTTTTATTGTCGGCAGTGCCACAAGTAATTCATGCGCGCCGGATGGCATACCATCC > 1:30687788/1‑68 GCAGCGGGCAACGTTTTATTGTCGGCAGTGACAGAAGTAATTCATGCGCGCCGGATGGCATACCATCC > 1:12133629/1‑68 CAGCGGGCAACGTTTTATTGTCGGCAGTGCCAGAAGTAATTCATGCGCGCCGGATGGCATACCATCCG > 1:4536093/1‑68 CAGCGGGCAACGTTTTATTGTCGGCAGTGCCAGAAGTAATTCATGCGCGCCGGATGGCATACCATCCG > 1:20275396/1‑68 AGCGGGCAACGTTTTATTGTCGGCAGTGCCAGAAGTAATTCATGCGCGCCGGATGGCATACCATCCG > 1:3169026/1‑67 AGCGGGCAACGTTTTATTGTCGGCAGTGCCAGAAGTAATTCATGCGCGCCGGATGGCATACCATCCG > 1:9678122/1‑67 AGCGGGCAACGTTTTATTGTCGGCAGTGCCAGAAGTAATTCATGCGCGCCGGATGGCATACCATCCG > 1:8241412/1‑67 AGCGGGCAACGTTTTATTGTCGGCAGTGCCAGAAGTAATTCATGCGCGCCGGATGGCATACCATCCG > 1:13332937/1‑67 AGCGGGCAACGTTTTATTGTCGGCAGTGCCAGAAGTAATTCATGCGCGCCGGATGGCATACCATCCG > 1:9330018/1‑67 AGCGGGCAACGTTTTATTGTCGGCAGTGCCAGAAGTAATTCATGCGCGCCGGATGGCATACCATCCG > 1:3365310/1‑67 AGCGGGCAACGTTTTATTGTCGGCAGTGCCAGAAGTAATTCATGCGCGCCGGATGGCATACCATCCG > 1:19765477/1‑67 AGCGGGCAACGTTTTATTGTCGGCAGTGCCAGAAGTAATTCATGCGCGCCGGATGGCATACCATCCG > 1:3865025/1‑67 AGCGGGCAACGTTTTATTGTCGGCAGTGCCAGAAGTAATTCATGCGCGCCGGATGGCATAACATCCG > 1:8031588/1‑67 GGGCAACGTTTTATTGTCGGCAGTGCCAGAAGTAATTCATGCGCGCCGGATGGCATACCATCCGGC < 1:13325123/66‑1 GGGCAACGTTTTATTGTCGGCAGTGCCAGAAGTAATTCATGCGCGCCGGATGGCATACCATCCGGC < 1:18738579/66‑1 GGGCAACGTTTTATTGTCGGCAGTGCCAGAAGTAATTCATGCGCGCCGGATGGCATACCATCCGGC < 1:26678972/66‑1 GGGCAACGTTTTATTGTCGGCAGTGCCAGAAGTAATTCATGCGCGCCGGATGGCATACCATCCGG < 1:17852352/65‑1 GGGCAACGTTTTATTGTCGGCAGTGCCAGAAGTAATTCATGCGCGCCGGATGGCATACCATCCGG < 1:22122044/65‑1 GGGCAACGTTTTATTGGCGGCAGTGCCAGAAGTAATTCATGCGCGCCGGATGGCATACCATCCGGC < 1:29101400/66‑1 GGGCAACGTTTTATTGGCGGCAGTGCCAGAAGTAATTCATGCGCGCCGGAGGGCATACCATCCGGC < 1:7642921/66‑1 GTTTTATTGTCGGCAGTGCCAGAAGTAATTCATGCGCGCCGGATGGCATACCATCCGGCGCGCATGAA < 1:29116285/68‑1 TTTTATTGTCGGCAGTGCCAGAAGTAATTCATGCGCGCCGGATGGCATACCATC > 1:10715383/1‑54 TTGTCGGCAGTGCCAGAAGTAATTCATGCGCGCCGGATGGCATACCATCCGGCGCGCATGAATTACTT < 1:20649592/68‑1 CCATCCGGCGCGCATGAATTACTTCTGGCACTGCCGACAATAAAACGTTGCCCGCTGCGGATGTTTAG > 1:9959745/1‑68 CCATCCGGCGCGCATGAATTACTTCTGGCACTGCCGACAATAAAACGTTGCCCGCTGCGCATGTTTAG > 1:31273636/1‑68 CCATCCGGCGCGCATGAATTACTTCTGGCACTGCCGACAATAAAACGTTGCCCGCTGCGCATGTTTAG > 1:30415073/1‑68 CCATCCGGCGCGCATGAATTACTTCTGGCACTGCCGACAATAAAACGTTGCCCGCTGCGCATGTTTAG > 1:13409763/1‑68 CATCCGGCGCGCATGAATTACTTCTGGCACTGCCGACAATAAAACGTTGCCCGCTGCGCATGTTTAG > 1:20326932/1‑67 CATCCGGCGCGCATGAATTACTTCTGGCACTGCCGACAATAAAACGTTGCCCGCTGCGCATGTTTAG > 1:7998346/1‑67 CATCCGGCGCGCATGAATTACTTCTGGCACTGCCGACAATAAAACGTTGCCCGCTGCGCATGTTTAG > 1:30785862/1‑67 CATCCGGCGCGCATGAATTACTTCTGGCACTGCCGACAATAAAACGTTGCCCGCTGCGCATGTTTAG > 1:7725663/1‑67 CATCCGGCGCGCATGAATTACTTCTGGCACTGCCGACAATAAAACGTTGCCCGCTGCGCATGTTTAG > 1:14259622/1‑67 CATCCGGCGCGCATGAATTACTTCTGGCACTGCCGACAATAAAACGTTGCCCGCTGCGCATGTTTAG > 1:6454692/1‑67 CATCCGGCGCGCATGAATTACTTCTGGCACTGCCGACAATAAAACGTTGCCCGCTGCGCATGTTTAG > 1:16193738/1‑67 CATCCGGCGCGCATGAATTACTTCTGGCACTGCCGACAATAAAACGTTGCCCGCTGCGCATGTTTAG > 1:1186146/1‑67 CATCCGGCGCGCATGAATTACTTCTGGCACTGCCGACAATAAAACGTTGCCCGCTGCGCATGTTTAG > 1:28256338/1‑67 CATCCGGCGCGCATGAATTACATCTGGCACTGCCGACAATAAAACGTTGCCCGCTGCGCATGTTTAGT < 1:21614402/68‑1 cTCCGGCGCGCATGAATTACTTCTGGCACTGCCGACAATAAAACGTTGCCCGCTGCGCATGTTTAGTC > 1:24250105/2‑68 ATCCGGCGCGCATGAATTACTTCTGGCACTGCCGACAATAAATCGTTGCCCGCTGCGCATGTTTAGTC > 1:17077288/1‑68 ATCCGGCGCGCATGAATTACTTCTGGCACTGCCGACAATAAAACGTTGCCCGCTGCGCATGTTTAGTC > 1:10821896/1‑68 ATCCGGCGCGCATGAATTACTTCTGGCACTGCCGACAATAAAACGTTGCCCGCTGCGCATGTTTAGTC > 1:19992003/1‑68 ATCCGGCGCGCATGAATTACTTCTGGCACTGCCGACAATAAAACGTTGCCCGCTGCGCATGTTTAGTC < 1:15284708/68‑1 ATCCGGCGCGCATGAATTACTTCTGGCACTGCCGACAATAAAACGTTGCCCGCTGCGCATGTTTAGTC > 1:4176260/1‑68 ATCCGGCGCGCATGAATTACTTCTGGCACTGCCGACAATAAAACGTTGCCCGCTGCGCATGTTTAGTC > 1:5031583/1‑68 ATCCGGCGCGCATGAATTACTTCTGGCACTGCCGACAATAAAACGTTGCCCGCTGCGCATGTTTAGTC > 1:24460222/1‑68 ATCCGGCGCGCATGAATTACTTCTGGCACTGCCGACAATAAAACGTTGCCCGCTGCGCATGTTTAGTC > 1:30329806/1‑68 ATCCGGCGCGCATGAATTACTTCTGGCACTGCCGACAATAAAACGTTGCCCGCTGCGCATGTTTAGTC > 1:243767/1‑68 ATCCGGCGCGCATGAATTACTTCTGGCACTGCCGACAATAAAACGTTGCCCGCTGCGCATGTTTAGTC > 1:13968418/1‑68 ATCCGGCGCGCATGAATTACTTCTGGCACTGCCGACAATAAAACGTTGCCCGCTGCGCATGTTTAGTC > 1:2795568/1‑68 ATCCGGCGCGCATGAATTACTTCTGGCACTGCCGACAATAAAACGTTGCCCGCTGCGCATGTTTAGTC > 1:24652569/1‑68 ATCCGGCGCGCATGAATTACTTCTGGCACTGCCGACAATAAAACGTTGCCCGCTGCGCATGTTTAGTC > 1:24889025/1‑68 ATCCGGCGCGCATGAATTACTTCTGGCACTGCCGACAATAAAACGTTGCCCGCTGCGCATGTTTAGTC > 1:9051920/1‑68 ATCCGGCGCGCATGAATTACTTCTGGCACTGCCGACAATAAAACGTTGCCCGCTGCGCATGTTTAGTC > 1:24955744/1‑68 CCGGCGCGCATGAATTACTTCTGGCACTGCCGCCAATAAAACGTTGCCCGCTGCGCATGTTTAGTCG > 1:8399383/1‑67 CCGGCGCGCATGAATTACTTCTGGCACTGCCGACAATAAAACGTTGCCCGCTGCGCATGTTTAGTCGC < 1:11657166/68‑1 CCGGCGCGCATGAATTACTTCTGGCACTGCCGACAATAAAACGTTGCCCGCTGCGCATGTTTAGTCGC < 1:25540472/68‑1 CCGGCGCGCATGAATTACTTCTGGCACTGCCGACAATAAAACGTTGCCCGCTGCGCATGTTTAGTCGC < 1:2637697/68‑1 CCGGCGCGCATGAATTACTTCTGGCACTGCCGACAATAAAACGTTGCCCGCTGCGCATGTTTAGTCGC < 1:27127010/68‑1 CCGGCGCGCATGAATTACTTCTGGCACTGCCGACAATAAAACGTTGCCCGCTGCGCATGTTTAGTCGC < 1:4467121/68‑1 CCGGCGCGCATGAATTACTTCTGGCACTGCCGACAATAAAACGTTGCCCGCTGCGCATGTTTAGTCGC < 1:4427318/68‑1 CCGGCGCGCATGAATTACTTCTGGCACTGCCGACAATAAAACGTTGCCCGCTGCGCATGTTTAGTCGC < 1:23494085/68‑1 CCGGCGCGCATGAATTACTTCTGGCACTGCCGACAATAAAACGTTGCCCGCTGCGCATGTTTAGTCG > 1:10290371/1‑67 CCGGCGCGCATGAATTACTTCTGGCACTGCCGACAATAAAACGTTGCCCGCTGCGCATGTTTAGTCG > 1:6869182/1‑67 CCGGCGCGCATGAATTACTTCTGGCACTGCCGACAATAAAACGTTGCCCGCTGCGCATGTTTAGTCG > 1:3682399/1‑67 CCGGCGCGCATGAATTACTTCTGGCACTGCCGACAATAAAACGTTGCCCGCTGCGCATGTTTAGTCG > 1:22116509/1‑67 CCGGCGCGCATGAATTACTTCTGGCACTGCCGACAATAAAACGTTGCCCGCTGCGCATGTTTAGTCG > 1:20776153/1‑67 CGGCGCGCATGAATTACTTCTGGCACTGCCGACAATAAAACGTTGCCCGCTGCGCATGTTTAGTCGCC < 1:6944818/68‑1 CGGCGCGCATGAATTACTTCTGGCACTGCCGACAATAAAACGTTGCCCGCTGCGCATGTTTAGTCGCC < 1:649401/68‑1 CGGCGCGCATGAATTACTTCTGGCACTGCCGACAATAAAACGTTGCCCGCTGCGCATGTTTAGTCGCC < 1:10296258/68‑1 GGCGCGCATGAATTACTTCTGGCACTGCCGACAATAAAACGTTGCCCGCTGCGCATGTTTAGTCGCCA < 1:31214518/68‑1 GGCGCGCATGAATTACTTCTGGCACTGCCGACAATAAAACGTTGCCCGCTGCGCATGTTTAGTCGCC > 1:30762099/1‑67 GGCGCGCATGAATTACTTCTGGCACTGCCGACAATAAAACGTTGCCCGCTGCGCATGTTTAGTCGCC > 1:29185334/1‑67 GGCGCGCATGAATTACTTCTGGCACTGCCGACAATAAAACGTTGCCCGCTGCGCATGTTTAGTCGCC > 1:27213805/1‑67 GGCGCGCATGAATTACTTCTGGCACTGCCGACAATAAAACGTTGCCCGCTGCGCATGTTTAGTCGCC > 1:18243790/1‑67 GGCGCGCATGAATTACTTCTGGCACTGCCGACAATAAAACGTTGCCCGCTGCGCATGTTTAGTCGCC > 1:16288318/1‑67 CGCGCATGAATTACTTCTGGCACTGCCGACAATAAAACGTTGCCCGCTGCGCATGTTTAGTCGCCAC < 1:13423257/67‑1 CATGCGCAGCGGGCAACGTTTTATTGTCGGCAGTGCCAGAAGTAATTCATGCGCGCCGGATGGCATACCATCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/3803747‑3803672‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccatccggcGCGCATGAATTACTTCTGGCACTGCCGACAATAAAACGTTGCCCGCTGCGCATGTTTAGTCGCCAC > CP009273/3803694‑3803759 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |