| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 3803672 = | NA (NA) | 4 (0.010) | 3/94 | NT | NA | noncoding (1/22 nt) | REP274 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP274 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | CP009273 | 3803694 = | NA (NA) | intergenic (+30/+9) | coaD/mutM | pantetheine‑phosphate adenylyltransferase/formamidopyrimidine/5‑formyluracil/ 5‑hydroxymethyluracil DNA glycosylase | |||||
Only 100 of 396 total aligned reads displayed.
AATGTCCATCAGGCGCTGATGGCGAAGTTAGCGTAGCGTTTATGCCGGATGGTATGCCATCCGGCGCGCATGAATTACTTCTGGCACTGCCGACAATAAAACGTTGCCCGCTGCGCATGTTTAGTCGCCACAA > CP009273/3803629‑3803761 | aaTGTCCATCAGGCGCTGATGGCGAAGTTAGCGTAGCGTTTATGCCGGATGGTATGCCCTCCGgcgc > 1:6747314/1‑67 (MQ=255) tGTCCATCAGGCGCTGATGGCGAAGTTAGCGTAGCGTTTATGCCGGATGGTATGCCATCCGGCGCGCa < 1:21913822/68‑1 (MQ=255) tGTCCATCAGGCGCTGATGGCGAAGTTAGCGTAGCGTTTATGCCGGATGGTATGCCATCCGGCGCGCa < 1:9520073/68‑1 (MQ=255) tGTCCATCAGGCGCTGATGGCGAAGTTAGCGTAGCGTTTATGCCGGATGGTATGCCATCCGGCGCGCa < 1:23372173/68‑1 (MQ=255) tGTCCATCAGGCGCTGATGGCGAAGTTAGCGTAGCGTTTATGCCGGATGGTATGCCATCCGGCGCGCa < 1:7678052/68‑1 (MQ=255) gTCCATCAGGCGCTGATGGCGAAGTTAGCGTAGCGTTTATGCCGGATGGTATGCCATCCGGCGCGCAt < 1:851359/68‑1 (MQ=255) gTCCATCAGGCGCTGATGGCGAAGTTAGCGTAGCGTTTATGCCGGATGGTATGCCATCCGGCGCGCAt < 1:17946385/68‑1 (MQ=255) ccATCAGGCGCTGATGGCGAAGTTAGCGTAGCGTTTATGCCGGATGGTATGCCATCCGGCGCGCATg < 1:9580468/67‑1 (MQ=255) ccATCAGGCGCTGATGGCGAAGTTAGCGTAGCGTTTATGCCGGATGGTATGCCATCCGGCGCGCATGa < 1:19089072/68‑1 (MQ=255) ccATCAGGCGCTGATGGCGAAGTTAGCGTAGCGTTTATGCCGGATGGTATGCCATCCGGCGCGCATGa < 1:30907724/68‑1 (MQ=255) cATCAGGCGCTGATGGCGAAGTTAGCGTAGCGTTTATGCCGGATGGTATGCCATCCGGCGCGCATGaa < 1:25826807/68‑1 (MQ=255) cATCAGGCGCTGATGGCGAAGTTAGCGTAGCGTTTATGCCGGATGGTATGCCATCCGGCGCGCATGaa < 1:2822159/68‑1 (MQ=255) cAGGCGCTGATGGCGAAGTTAGCGTAGCGTTTATGCCGGATGGTATGCCATCCGGCGCGCATGAAtt > 1:10681287/1‑67 (MQ=255) aGGCGCTGATGGCGAAGTTAGCGTAGCGTTTATGCCGGATGGTATGCCATCCGGCGCGCATGAAtt > 1:22151518/1‑66 (MQ=255) ggCGCTGATGGCGAAGTTAGCGTAGCGTTTATGCCGGATGGTATGCCATCCGGCGCGCATGAATTACt > 1:16023373/1‑68 (MQ=255) cgcTGATGGCGAAGTTAGCGTAGCGTTTATGCCGGATGGTATGCCATCCGGCGCGCATGAATTACtt < 1:1493083/67‑1 (MQ=255) cgcTGATGGCGAAGTTAGCGTAGCGTTTATGCCGGATGGTATGCCATCCGGCGCGCATGAATTACt < 1:22960226/66‑1 (MQ=255) cgcTGATGGCGAAGTTAGCGTAGCGTTTATGCCGGATGGTATGCCATCCGGCGCGCATGAATTACt < 1:8713705/66‑1 (MQ=255) cgcTGATGGCGAAGTTAGCGTAGCGTTTATGCCGGATGGTATGCCATCCGGCGCGCATGAATTACt < 1:27166853/66‑1 (MQ=255) cgcTGATGGCGAAGTTAGCGTAGCGTTTATGCCGGAGGGTATGCCATCCGGCGCGCATGAATTAc < 1:19618922/65‑1 (MQ=255) cgcTGATGGCGAAGCTAGCGTAGCGTTTATGCCGGATGGTATGCCATCCGGCGCGCATGAATTACt > 1:10909560/1‑66 (MQ=255) gcTGATGGCGAAGTTAGCGTAGCGTTTATGCCGGATGGTATGCCATCCGGCGCGCATGAATTACt > 1:5252986/1‑65 (MQ=255) tGATGGCGAAGTTAGCGTAGCGTTTATGCCGGATGGTATGCCATCCGGCGCGCATGAATTACTTCTg < 1:7549953/67‑1 (MQ=255) gAAGTTAGCGTAGCGTTTATGCCGGATGGTATGCCATCCGGCGCGCATGAATTACTTCTGGCACTGc < 1:14290098/67‑1 (MQ=255) gAAGTTAGCGTAGCGTTTATGCCGGATGGTATGCCATCCGGCGCGCATGAATTACTTCTGGCACTGc < 1:23806151/67‑1 (MQ=255) gAAGTTAGCGTAGCGTTTATGCCGGATGGTATGCCATCCGGCGCGCATGAATTACTTCTGGCACTGc < 1:16724020/67‑1 (MQ=255) gAAGTTAGCGTAGCGTTTATGCCGGATGGTATGCCATCCGGCGCGCATGAATTACTTCTGGCACTGc < 1:12803949/67‑1 (MQ=255) gAAGTTAGCGTAGCGTTTATGCCGGATGGTATGCCATCCGGCGCGCATGAATTACTTCTGGCACTGc < 1:18682750/67‑1 (MQ=255) gAAGTTAGCGTAGCGTTTATGCCGGATGGTATGCCATCCGGCGCGCATGAATTACTTCTGGCACTGc < 1:8294613/67‑1 (MQ=255) aaGTTAGCGTAGCGTTTATGCCGGATGGTATGCCATCCGGCGCGCATGAATTACTTCTGGCACTGCCg > 1:9794932/1‑68 (MQ=255) aaGTTAGCGTAGCGTTTATGCCGGATGGTATGCCATCCGGCGCGCATGAATTACTTCTGGCACTGCCg > 1:16429398/1‑68 (MQ=255) tagcgtagcgTTTATGCCGGATGGTATGCCATCCGGCGCGCATGAATTACTTCTGGCACTGCCGACaa < 1:7297851/68‑1 (MQ=255) tagcgtagcgTTTATGCCGGATGGTATGCCATCCGGCGCGCATGAATTACTTCTGGCACTGCCGACa < 1:27435097/67‑1 (MQ=255) tagcgtagcgTTTATGCCGGATGGTATGCCATCCGGCGCGCATGAATTACTTCTGGCACTGCCGACa < 1:29419651/67‑1 (MQ=255) tagcgtagcgTTTATGCCGGATGGTATGCCATCCGGCGCGCATGAATTACTTCTGGCACTGCCGACa < 1:25537987/67‑1 (MQ=255) tagcgtagcgTTTATGCCGGATGGTATGCCATCCGGCGCGCATGAATTACTTCTGGCACTGCCGACa < 1:3309096/67‑1 (MQ=255) tagcgtagcgTTTATGCCGGATGGTATGCCATCCGGCGCGCATGAATTACTTCTGGCACTGCCGACa < 1:11689248/67‑1 (MQ=255) tagcgtagcgTTTATGCCGGATGGTATGCCATCCGGCGCGCATGAATTACTTCTGGCACTGCCGACa < 1:12048465/67‑1 (MQ=255) tagcgtagcgTTTATGCCGGATGGTATGCCATCCGGCGCGCATGAATTACTTCTGGCACTGCCGACa < 1:17571109/67‑1 (MQ=255) tagcgtagcgTTTATGCCGGATGGTATGCCATCCGGCGCGCATGAATTACTTCTGGCACTGCCGACa < 1:12145998/67‑1 (MQ=255) agtaattcatgcgcGCCGGATGGTATGCCATCCGGCGCGCATGAATTACTTCTGGCACTGCCGACAAt < 1:19526156‑M1/54‑1 (MQ=255) agcttagcgtTTATGACGTATGGTATGCCATCCGGCGCGCATGAATTACTTCTGGCACTGCCGACAAt < 1:14248216/68‑1 (MQ=255) agcgtagcgtTTATGCCGGATGGTATGCCATCCGGCGCGCATGAATTACTTCTGGCACTGCCGACAAt < 1:14653291/68‑1 (MQ=255) agcgtagcgtTTATGCCGGATGGTATGCCATCCGGCGCGCATCAATTACTTCTGGCACTGCCGACAAt < 1:21657257/68‑1 (MQ=255) tagcgtTTATGCCGGATGGTATGCCATCCGGCGCGCATGAATTACTTCTGGCACTGCCGACAATaaa > 1:28913897/1‑67 (MQ=255) tagcgtTTATGCCGGATGGTATGCCATCCGGCGCGCATGAATTACTTCTGGCACTGCCGACAATaaa > 1:7782653/1‑67 (MQ=255) agcgtTTATGCCGGATGGTATGCCATCCGGCGCGCATGAATTACTTCTGGCACTGCCGACAATAAAAc < 1:10066891/68‑1 (MQ=255) agcgtTTATGCCGGATGGTATGCCATCCGGCGCGCATGAATTACTTCTGGCACTGCCGACAATAAAAc < 1:1712927/68‑1 (MQ=255) cgtTTATGCCGGATGGTATGCCATCCGGCGCGCATGAATTACTTCTGGCACTGCCGACAATAAAACGt > 1:30578482/1‑68 (MQ=255) gtTTATGCCGGATGGTATGCCATCCGGCGCGCATGAATTACTTCTGGCACTGCCGACAATAAAACGt < 1:20158993/67‑1 (MQ=255) tGCCGGATGGTATGCCATCCGGCGCGCATGAATTACTTCTGGCACTGCCGACAATAAAACGTTGccc > 1:12447061/1‑67 (MQ=255) tGCCGGATGGTATGCCATCCGGCGCGCATGAATTACTTCTGGCACTGCCGACAATAAAACGTTGccc > 1:9136427/1‑67 (MQ=255) tGCCGGATGGTATGCCATCCGGCGCGCATGAATTACTTCTGGCACTGCCGACAATAAAACGTTGccc > 1:5438828/1‑67 (MQ=255) GCCGGATGGTATGCCATCCGGCGCGCATGAATTACTTCTGGCACTGCCGCCAATAAAACGTTGccc < 1:29101400‑M1/66‑1 (MQ=255) GCCGGATGGTATGCCATCCGGCGCGCATGAATTACTTCTGGCACTGCCGACAATAAAACGTTGccc < 1:13325123‑M1/66‑1 (MQ=255) GCCGGATGGTATGCCATCCGGCGCGCATGAATTACTTCTGGCACTGCCGACAATAAAACGTTGccc < 1:26678972‑M1/66‑1 (MQ=255) CGGATGTTATGCCATCCGGCGCGCATGAATTACTTCTGGCACTGCCGACAATAAAACGTTGCCCGCt > 1:8031588‑M1/1‑67 (MQ=255) CGGATGGTATGCCATCCGGCGCGCATGAATTACTTCTGGCACTGCCGACAATAAAACGTTGCCCGCt > 1:3865025‑M1/1‑67 (MQ=255) CGGATGGTATGCCATCCGGCGCGCATGAATTACTTCTGGCACTGCCGACAATAAAACGTTGCCCGCTg > 1:4536093‑M1/1‑68 (MQ=255) GGATGGTATGCCATCCGGCGCGCATGAATTACTTCTGGCACTGCCGACAATAAAACGTTGCCCGCTgc > 1:31640397‑M1/1‑68 (MQ=255) GGATGGTATGCCATCCGGCGCGCATGAATTACTTCTGGCACTGCCGACAATAAAACGTTGCCCGCTgc > 1:6959906‑M1/1‑68 (MQ=255) GGATGGTATGCCATCCGGCGCGCATGAATTACTTCTGGCACTGCCGACAATAAAACGTTGCCCGCTgc > 1:15723855‑M1/1‑68 (MQ=255) GGATGGTATGCCATCCGGCGCGCATGAATTACTTCTGGCACTGCCGACAATAAAACGTTGCCCGCTgc > 1:28620911‑M1/1‑68 (MQ=255) ATGGTATGCCATCCGGCGCGCATGAATTACTTCTGGCACTGCCGACAATAAAACGTTGCCCGCTgcg > 1:71302‑M1/1‑67 (MQ=255) ATGGTATGCCATCCGGCGCGCATGAATTACTTCTGGCACTGCCGACAATAAAACGTTGCCCGCTgcg > 1:29275686‑M1/1‑67 (MQ=255) ATGGTATGCCATCCGGCGCGCATGAATTACTTCTGGCACTGCCGACAATAAAACGTTGCCCGCTgcg > 1:28270940‑M1/1‑67 (MQ=255) ATGGTATGCCATCCGGCGCGCATGAATTACTTCTGGCACTGCCGACAATAAAACGTTGCCCGCTgcg > 1:19270791‑M1/1‑67 (MQ=255) tATGCCATCCGGCGCGCATGAATTACTTCTGGCACTGCCGACAATAAAACGTTGCCCGCTGCGCATg < 1:21177755/67‑1 (MQ=255) tATGCCATCCGGCGCGCATGAATTACTTCTGGCACTGCCGACAATAAAACGTTGCCCGCTGCGCATg < 1:9456303/67‑1 (MQ=255) tATGCCATCCGGCGCGCATGAATTACTTCTGGCACTGCCGACAATAAAACGTTGCCCGCTGCGCATg < 1:1129039/67‑1 (MQ=255) tATGCCATCCGGCGCGCATGAATTACTTCTGGCACTGCCGACAATAAAACGTTGCCCGCTGCGCATg < 1:29826255/67‑1 (MQ=255) aTGCCATCCGGCGCGCATGAATTACTTCTGGCACTGCCGACAATAAAACGTTGCCCGCTGCGCATGtt > 1:30781223/1‑68 (MQ=255) gCCATCCGGCGCGCATGAATTACTTCTGGCACTGCCGACAATAAAACGTTGCCCGCTGCGCATGTTTa > 1:19803138/1‑68 (MQ=255) gCCATCCGGCGCGCATGAATTACTTCTGGCACTGCCGACAATAAAACGTTGCCCGCTGCGCATGTTTa > 1:2408637/1‑68 (MQ=255) gCCATCCGGCGCGCATGAATTACTTCTGGCACTGCCGACAATAAAACGTTGCCCGCTGCGCATGTTTa > 1:25621689/1‑68 (MQ=255) gCCATCCGGCGCGCATGAATTACTTCTGGCACTGCCGACAATAAAACGTTGCCCGCTGCGCATGTTTa > 1:11951325/1‑68 (MQ=255) gCCATCCGGCGCGCATGAATTACTTCTGGCACTGCCGACAATAAAACGTTGCCCGCTGCGCATGTTTa > 1:22592639/1‑68 (MQ=255) gCCATCCGGCGCGCATGAATTACTTCTGGCACTGCCGACAATAAAACGTTGCCCGCTGCGCATGTTTa > 1:5829378/1‑68 (MQ=255) gCCATCCGGCGCGCATGAATTACTTCTGGCACTGCCGACAATAAAACGTTGCCCGCTGCGCATGTTTa > 1:112137/1‑68 (MQ=255) gCCATCCGGCGCGCATGAATTACTTCTGGCACTGCCGACAATAAAACGTTGCCCGATGCGCATGTTTa > 1:15538329/1‑68 (MQ=255) ccatccggcGCGCATGAATTACTTCTGGCACTGCCGACAATAAAACGTTGCCCGCTGCGCATGTTTAg > 1:13409763‑M2/10‑68 (MQ=255) ccatccggcGCGCATGAATTACTTCTGGCACTGCCGACAATAAAACGTTGCCCGCTGCGCATGTTTAg > 1:30143801‑M2/10‑68 (MQ=255) catccggcGCGCATGAATTACTTCTGGCACTGCCGACAATAAAACGTTGCCCGCTGCGCATGTTTAg > 1:20326932‑M2/9‑67 (MQ=255) catccggcGCGCATGAATTACTTCTGGCACTGCCGACAATAAAACGTTGCCCGCTGCGCATGTTTAg > 1:6454692‑M2/9‑67 (MQ=255) catccggcGCGCATGAATTACTTCTGGCACTGCCGACAATAAAACGTTGCCCGCTGCGCATGTTTAg > 1:16193738‑M2/9‑67 (MQ=255) ctccggcGCGCATGAATTACTTCTGGCACTGCCGACAATAAAACGTTGCCCGCTGCGCATGTTTAGTc > 1:24250105‑M2/8‑68 (MQ=255) atccggcGCGCATGAATTACTTCTGGCACTGCCGACAATAAAACGTTGCCCGCTGCGCATGTTTAGTc > 1:13968418‑M2/8‑68 (MQ=255) atccggcGCGCATGAATTACTTCTGGCACTGCCGACAATAAAACGTTGCCCGCTGCGCATGTTTAGTc > 1:2795568‑M2/8‑68 (MQ=255) atccggcGCGCATGAATTACTTCTGGCACTGCCGACAATAAAACGTTGCCCGCTGCGCATGTTTAGTc > 1:4176260‑M2/8‑68 (MQ=255) atccggcGCGCATGAATTACTTCTGGCACTGCCGACAATAAAACGTTGCCCGCTGCGCATGTTTAGTc > 1:24889025‑M2/8‑68 (MQ=255) atccggcGCGCATGAATTACTTCTGGCACTGCCGACAATAAAACGTTGCCCGCTGCGCATGTTTAGTc > 1:24652569‑M2/8‑68 (MQ=255) ccggcGCGCATGAATTACTTCTGGCACTGCCGACAATAAAACGTTGCCCGCTGCGCATGTTTAGTCg > 1:20776153‑M2/6‑67 (MQ=255) ccggcGCGCATGAATTACTTCTGGCACTGCCGACAATAAAACGTTGCCCGCTGCGCATGTTTAGTCg > 1:10290371‑M2/6‑67 (MQ=255) ccggcGCGCATGAATTACTTCTGGCACTGCCGACAATAAAACGTTGCCCGCTGCGCATGTTTAGTCg > 1:6081629‑M2/6‑67 (MQ=255) ccggcGCGCATGAATTACTTCTGGCACTGCCGACAATAAAACGTTGCCCGCTGCGCATGTTTAGTCg > 1:3682399‑M2/6‑67 (MQ=255) ccggcGCGCATGAATTACTTCTGGCACTGCCGACAATAAAACGTTGCCCGCTGCGCATGTTTAGTCGc < 1:2637697‑M2/63‑1 (MQ=255) ggcGCGCATGAATTACTTCTGGCACTGCCGACAATAAAACGTTGCCCGCTGCGCATGTTTAGTCGcc > 1:29185334‑M2/4‑67 (MQ=255) ggcGCGCATGAATTACTTCTGGCACTGCCGACAATAAAACGTTGCCCGCTGCGCATGTTTAGTCGCca < 1:31214518‑M2/65‑1 (MQ=255) gcgcATGAATTACTTCTGGCACTGCCGACAATAAAACGTTGCCCGCTGCGCATGTTTAGTCGCCACaa > 1:22095967/1‑68 (MQ=255) gcgcATGAATTACTTCTGGCACTGCCGACAATAAAACGTTGCCCGCTGCGCATGTTTAGTCGCCACaa > 1:4406767/1‑68 (MQ=255) | AATGTCCATCAGGCGCTGATGGCGAAGTTAGCGTAGCGTTTATGCCGGATGGTATGCCATCCGGCGCGCATGAATTACTTCTGGCACTGCCGACAATAAAACGTTGCCCGCTGCGCATGTTTAGTCGCCACAA > CP009273/3803629‑3803761 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |