| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 3920778 = | 405 (1.050) | 44 (0.150) | 13/88 | NT | 12.4% | coding (264/993 nt) | asnA | asparagine synthetase A |
| ? | CP009273 | 3920817 = | 304 (1.000) | coding (303/993 nt) | asnA | asparagine synthetase A | |||||
Only 100 of 377 total aligned reads displayed.
ACATAGACCGAGTGCAACGGAGAAAGACGGTCTTCATCGGGGCGAAGGGCTTTCATGTGCGTGTACAGCCCTTCGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/3920855‑3920778‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agcccttcgcccCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGACTGGGAACGCGTAATG > CP009273/3920817‑3920883 ACATAGACCGAGTGCAACGGAGAAAGACGGTCTTCATCGGGGCGAAGGGCTTTCATGTGCGTGTACA > 1:28093645/1‑67ACATAGACCGAGTGCAACGGAGAAAGACGGTCTTCATCGGGGCGAAGGGCTTTCATGTGCGTGTACA > 1:5166516/1‑67ACATAGACCGAGTGCAACGGAGAAAGACGGTCTTCATCGGGGCGAAGGGCTTTCATGTGCGTGTACA > 1:16743553/1‑67ACATAGACCGAGTGCAACGGAGAAAGACGGTCTTCATCGGGGCGAAGGGCTTTCATGTGCGTGTACA > 1:16543847/1‑67ACATAGACCGAGTGCAACGGAGAAAGACGGTCTTCATCGGGGCGAAGGGCTTTCATGTGCGTGTACA > 1:6692193/1‑67 CATAGACCGAGGGCAACGGAGAAAGACGGTCTTCATCGGGGCGAAGGGCTTTCATGTGCGTGTACAGC < 1:6021904/68‑1 ATAGACCGAGTGCAACGGAGAAAGCCGGTCTTCATCGGGGCGAAGGGCTTTCATGTGCGTGTACAGC > 1:1222004/1‑67 ATAGACCGAGTGCAACGGAGAAAGACGGTCTTCATCGTGGCGAAGGGCTTTCATGTGCGTGTACAGC > 1:4349061/1‑67 ATAGACCGAGTGCAACGGAGAAAGACGGTCTTCATCGGGGCGAAGGGCTTTCATTTGCGTGTACAGC > 1:30733089/1‑67 ATAGACCGAGTGCAACGGAGAAAGACGGTCTTCATCGGGGCGAAGGGCTTTCATGTGCGTGTACAGCC < 1:25951041/68‑1 ATAGACCGAGTGCAACGGAGAAAGACGGTCTTCATCGGGGCGAAGGGCTTTCATGTGCGTGTACAGCC < 1:23815027/68‑1 ATAGACCGAGTGCAACGGAGAAAGACGGTCTTCATCGGGGCGAAGGGCTTTCATGTGCGTGTACAGCC < 1:30462674/68‑1 ATAGACCGAGTGCAACGGAGAAAGACGGTCTTCATCGGGGCGAAGGGCTTTCATGTGCGTGTACAGCC < 1:16381935/68‑1 ATAGACCGAGTGCAACGGAGAAAGACGGTCTTCATCGGGGCGAAGGGCTTTCATGTGCGTGTACAGCC < 1:6821451/68‑1 ATAGACCGAGTGCAACGGAGAAAGACGGTCTTCATCGGGGCGAAGGGCTTTCATGTGCGTGTACAGCC < 1:7470831/68‑1 ATAGACCGAGTGCAACGGAGAAAGACGGTCTTCATCGGGGCGAAGGGCTTTCATGTGCGTGTACAGCC < 1:14328941/68‑1 ATAGACCGAGTGCAACGGAGAAAGACGGTCTTCATCGGGGCGAAGGGCTTTCATGTGCGTGTACAGCC < 1:11578144/68‑1 ATAGACCGAGTGCAACGGAGAAAGACGGTCTTCATCGGGGCGAAGGGCTTTCATGTGCGTGTACAGC > 1:11982500/1‑67 ATAGACCGAGTGCAACGGAGAAAGACGGTCTTCATCGGGGCGAAGGGCTTTCATGTGCGTGTACAGC > 1:31730827/1‑67 ATAGACCGAGTGCAACGGAGAAAGACGGTCTTCATCGGGGCGAAGGGCTTTCATGTGCGTGTACAGC > 1:8499040/1‑67 ATAGACCGAGTGCAACGGAGAAAGACGGTCTTCATCGGGGCGAAGGGCTTTCATGTGCGTGTACAGC > 1:9335542/1‑67 ATAGACCGAGTGCAACGGAGAAAGACGGTCTTCATCGGGGCGAAGGGCTTTCATGTGCGTGTACAGC > 1:30125349/1‑67 ATAGACCGAGTGCAACGGAGAAAGACGGTCTTCATCGGGGCGAAGGGCTTTCATGTGCGTGTACAGC > 1:18860159/1‑67 ATAGACCGAGTGCAACGGAGAAAGACGGTCTTCATCGGGGCGAAGGGCTTTCATGTGCGTGTACAGC > 1:28661661/1‑67 ATAGACCGAGTGCAACGGAGAAAGACGGTCTTCATCGGGGCGAAGGGCTTTCATGTGCGTGTACAGC > 1:6506299/1‑67 ATAGACCGAGTGCAACGGAGAAAGACGGTCTTCATCGGGGCGAAGGGCTTTCATGTGCGTGTACAGC > 1:810953/1‑67 TAGACCGAGTGCAACGGAGAAAGACGGTCTTCATCGGGGCGAAGGGCTTTCATGTGCGTGTACAGCCC < 1:29881001/68‑1 TAGACCGAGTGCAACGGAGAAAGACGGTCTTCATCGGGGCGAAGGGCTTTCATGTGCGTGTACAGC > 1:2296387/1‑66 CCGAGTGCAACGGAGAAAGACGGTCTTCATCGGGGCGAAGGGCTTTCATGTGCGTTTACAGCCCTTC > 1:9607617/1‑67 CCGAGTGCAACGGAGAAAGACGGTCTTCATCGGGGCGAAGGGCTTTCATGTGCGTGTTCAGCCCTTC > 1:13460827/1‑67 CCGAGTGCAACGGAGAAAGACGGTCTTCATCGGGGCGAAGGGCTTTCATGTGCGTGTACAGCCCTTC > 1:10504002/1‑67 CCGAGTGCAACGGAGAAAGACGGTCTTCATCGGGGCGAAGGGCTTTCATGTGCGTGTACAGCCCTTC > 1:1477147/1‑67 CCGAGTGCAACGGAGAAAGACGGTCTTCATCGGGGCGAAGGGCTTTCATGTGCGTGTACAGCCCTTC > 1:23248180/1‑67 CCGAGTGCAACGGAGAAAGACGGTCTTCATCGGGGCGAAGGGCTTTCATGTGCGTGTACAGCCCTTC > 1:24201906/1‑67 CCGAGTGCAACGGAGAAAGACGGTCTTCATCGGGGCGAAGGGCTTTCATGTGCGTGTACAGCCCTTC > 1:2778692/1‑67 CCGAGTGCAACGGAGAAAGACGGTCTTCATCGGGGCGAAGGGCTTTCATGTGCGTGTACAGCCCTTC > 1:27377306/1‑67 CCGAGTGCAACGGAGAAAGACGGTCTTCATCGGGGCGAAGGGCTTTCATGTGCGTGTACAGCCCTTC > 1:31451002/1‑67 CCGAGTGCAACGGAGAAAGACGGTCTTCATCGGGGCGAAGGGCTTTCATGTGCGTGTACAGCCCTTC > 1:2621468/1‑67 CCGAGTGCAACGGAGAAAGACGGTCTTCATCGGGGCGAAGGGCTTTCATGTGCGTGTACAGCCCTTC > 1:20464052/1‑67 CCGAGTGCAACGGAGAAAGACGGTCTTCATCGGGGCGAAGGGCTTTCATGTGCGTGTACAGCCCTTC > 1:20190656/1‑67 CCGAGTGCAACGGAGAAAGACGGTCTTCATCGGGGCGAAGGGCTTTCATGTGCGTGTACAGCCCTTC > 1:19981046/1‑67 CCGAGTGCAACGGAGAAAGACGGTCTTCATCGGGGCGAAGGGCTTTCATGTGCGTGTACAGCCCTTC > 1:19746449/1‑67 CCGAGTGCAACGGAGAAAGACGGTCTTCATCGGGGCGAAGGGCTTTCATGTGCGTGTACAGCCCTTC > 1:410351/1‑67 CCGAGTGCAACGGAGAAAGACGGTCTTCATCGGGGCGAAGGGCTTTCATGTGCGTGTACAGCCCTTC > 1:11473295/1‑67 CCGAGTGCAACGGAGAAAGACGGTCTTCATCGGGGCGAAGGGCTTTCATGTGCGTGTACAGCCCTTC > 1:18309253/1‑67 CCGAGTGCAACGGAGAAAGACGGTCTTCATCGGGGCGAAGGGCTTTCATGTGCGTGTACAGCCCTTC > 1:4715285/1‑67 CCGAGTGCAACGGAGAAAGACGGTCTTCATCGGGGCGAAGGGCTTTCATGTGCGTGTACAGCCCTTC > 1:4877350/1‑67 CCGAGTGCAACGGAGAAAGACGGTCTTCATCGGGGCGAAGGGCTTTCATGTGCGTGTACAGCCCTTC > 1:12575168/1‑67 CCGAGTGCAACGGAGAAAGACGGTCTTCATCGGGGCGAAGGGCTTTCATGTGCGTGTACAGCCCTTC > 1:1299846/1‑67 CCGAGTGCAACGGAGAAAGACGGTCTTCATCGGGGCGAAGGGCTTTCATGTGCGTGTACAGCCCTTC > 1:13924479/1‑67 CCGAGTGCAACGGAGAAAGACGGTCTTCATCGGGGCGAAGGGCTTTCATGTGCGTGTACAGCCCTTC > 1:8242889/1‑67 CCGAGTGCAACGGAGAAAGACGGTCTTCATCGGGGCGAAGGGCTTTCATGTGCGTGTACAGCCCTTC > 1:14826101/1‑67 CCGAGTGCAACGGAGAAAGACGGTCTTCATCGGGGCGAAGGGCTTTCATGTGCGTGTACAGCCCTTC > 1:14586656/1‑67 CCGAGTGCAACGGAGAAAGACGGTCTTCATCGGGGCGAAGGGCTTTCATGTGCGTGTACACCCCTTC > 1:24558193/1‑67 CCGAGTGCAACGGAGAAAGACGGTCTTCATCGGGGCGAAGGGCTTTAATGTGCGTGTACAGCCCTTC > 1:29087276/1‑67 CCGAGTGCAACGGAGAAAGACGCTCTTCATCGCGGCGAAGGGCTTTCATGTGCGTCTACAGCCCTTC > 1:19554562/1‑67 CCGAGTGCAACCGAGAAAGACGGTCTTCATCGGGGCGAAGGGCTTTCATGTGCGTGTACAGCCCTTC > 1:21897817/1‑67 CGAGTGCAACGGAGAAAGACGGTCTTCATCGGGGCGAAGGGCTTTCATGTGCGTGTACAGCCCTTCG > 1:26352305/1‑67 CGAGTGCAACGGAGAAAGACGGTCTTCATCGGGGCGAAGGGCTTTCATGTGCGTGTACAGCCCTTCG > 1:20318774/1‑67 CGAGTGCAACGGAGAAAGACGGTCTTCATCGGGGCGAAGGGCTTTCATGTGCGTGTACAGCCCTTCG > 1:8842661/1‑67 CGAGTGCAACGGAGAAAGACGGTCTTCATCGGGGCGAAGGGCTTTCATGTGCGTGTACAGCCCTTCG > 1:28351413/1‑67 CGAGTGCAACGGAGAAAGACGGTCTTCATCGGGGCGAAGGGCTTTCATGTGCGTGTACAGCCCTTCG > 1:17847221/1‑67 CGAGTGCAACGGAGAAAGACGGTCTTCATCGGGGCGAAGGGCTTTCATGTGCGTGTACAGCCCTTCG > 1:10990357/1‑67 CGAGTGCAACGGAGAAAGACGGTCTTCATCGGGGCGAAGGGCTTTCATGTGCGTGTACAGCCCTTCG > 1:21383134/1‑67 GAGTGCAACGGAGAAAGACGGTCTTCATCGGGGCGAAGGGCTTTCATGTGCGTGTACAGCCCTTCGCC < 1:2063461/68‑1 GAGTGCAACGGAGAAAGACGGTCTTCATCGGGGCGAAGGGCTTTCATGTGCGTGTACAGCCCTTCGCC < 1:25085028/68‑1 AGTGCAACGGAGAAAGACGGTCTTCATCGGGGCGAAGGGCTTTCATGTGCGTGTACAGCCCTTCGCCC > 1:2683129/1‑68 AGTGCAACGGAGAAAGACGGTCTTCATCGGGGCGAAGGGCTTTCATGTGCGTGTACAGCCCTTCGCCC > 1:8787547/1‑68 AGTGCAACGGAGAAAGACGGTCTTCATCGGCGCGAAGGGCTTTCATGTGCGTGTACAGCCCTTCGCC > 1:25529666/1‑67 GCAACGGAGAAAGACGGTCTTCATCGGGGCGAAGGGCTTTCATGTGCGTGTACAGCCCTTCGCCCCGA < 1:10806805/68‑1 GCAACGGAGAAAGACGGTCTTCATCGGGGCGAAGGGCTTTCATGTGCGTGTACAGCCCTTCGCCCC < 1:9848510/66‑1 GCAACGGAGAAAGACGGGCTTCATCGGGGCGAAGGGCTTTCATGTGCGTGTACAGCCCTTCGCCACGA < 1:2709872/68‑1 AAGACGGTCTTCATCGGGGCGAAGGGCTTTCATGTGCGTGTACAGCCCTTCGCCCCGATGAAGACCGT < 1:21735737/68‑1 CGGTCTTCATCGGGGCGAAGGGCTTTCATGTGCGTGTACAGCCCTTCGCCCCGATGAAGACCGT < 1:8697738/64‑1 CGACGGGCTTTCCTGTCCGTCTACACCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGG < 1:17172001/68‑1 CGAAGGCCTTTCATGTGCGTCAACCGCCCTCCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCG < 1:2943024/67‑1 gacGGGCTTTCATGTGCGGGTACAGCCCTTCGCCCCGATGAAGACCGTCTTTCGCCGTTGCACTCGG < 1:3651624/64‑1 GAAGGGCTTTCATGTGCGTGTACAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGT < 1:10667778/68‑1 GAAGGGCTTTCATGTGCGTGTACAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGG < 1:7704688/67‑1 GCTTTCATGTGCGTGTACAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTAT < 1:31201845/67‑1 CTTTCATGTGCGTGAACACCCCCTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGT < 1:22498022/68‑1 GTACAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGA < 1:15530706/67‑1 AGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGACTGGG < 1:5489098/68‑1 AGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGACTGGG < 1:15953343/68‑1 GCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGACTGGGA > 1:16876974/1‑68 GCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGACTGGGA > 1:29155717/1‑68 GCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGACTGGGA > 1:23670155/1‑68 GCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGACTGGGA > 1:3936255/1‑68 GCCCTTCGCCCAGATGAAGACCGTCTTTCTCCGATGCACTCGGTCTATGTTGACCAGTGGGACTGGGA > 1:14415553/1‑68 CCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGACTGGGAAC > 1:2654687/1‑68 CCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGACTGGGAAC > 1:18675289/1‑68 CCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGACTGGGAAC > 1:3437853/1‑68 CCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGACTGGGAAC > 1:14959969/1‑68 CTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGACTGGGAACG < 1:25254367/68‑1 CTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGACTGGGAACG < 1:17444430/68‑1 CTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTCACCAGTGGGACTGGGAACG < 1:22140110/68‑1 TCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGACTGGGAACGCG < 1:16179551/68‑1 TCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGACTGGGAACGCG < 1:10012934/68‑1 CGCCCCGATGAAGACCGTCTTTCCCCGTTGCACTCGGTCTATGTTGACCAGTGGGACTGGGAACGCGT < 1:31888549/68‑1 GCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGACTGGGAACGCGTA > 1:15792344/1‑68 ACATAGACCGAGTGCAACGGAGAAAGACGGTCTTCATCGGGGCGAAGGGCTTTCATGTGCGTGTACAGCCCTTCGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/3920855‑3920778‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agcccttcgcccCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGACTGGGAACGCGTAATG > CP009273/3920817‑3920883 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |