New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 3920778 =405 (1.050)44 (0.150) 13/88 NT 12.4% coding (264/993 nt) asnA asparagine synthetase A
?CP009273 3920817 = 304 (1.000)coding (303/993 nt) asnA asparagine synthetase A

Only 100 of 608 total aligned reads displayed.

AGTTCGAAGTGGTTCATTCACTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACT  >  CP009273/3920711‑3920845
                                                                   |                                                                   
 attacgcgttcccagtcccactggtcaacatagaccgagtgcaacggagaaagacggtcttcatcggg                                                                    <  1:5499185‑M1/2‑1 (MQ=255)
  ttacgcggtcccagtcgcagtgggcaacatagaccgagtgcaacggagaaagacggtcttcatcgggg                                                                   >  1:16826405‑M1/66‑68 (MQ=255)
   tacgcgttcccagtcccactggtcaacatagaccgagtgcaacggagaaagacggtcttcatcgGGGc                                                                  <  1:20078029‑M1/4‑1 (MQ=255)
   tCGAAGTGGTTCATTCACTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCggg                                                                   <  1:2491080/67‑1 (MQ=255)
   tCGAAGTGGTTCATTCACTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCggg                                                                   <  1:5124289/67‑1 (MQ=255)
   tCGAAGTGGTTCATTCACTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGc                                                                  <  1:10708907/68‑1 (MQ=255)
   tCGAAGTGGTTCATTCACTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGc                                                                  <  1:6741878/68‑1 (MQ=255)
     cgcgttcccagtcccactggtcaacatagaccgagtgcaacggagaaagacggtcttcatcgGGGCGa                                                                <  1:16179551‑M1/6‑1 (MQ=255)
       cgttcccagtcccactggtcaacatagaccgagtgcaacggagaaagacggtcttcatcgGGGCGAAg                                                              <  1:25254367‑M1/8‑1 (MQ=255)
        gTGGTTCATTCACTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAgg                                                             >  1:17505347/1‑68 (MQ=255)
        gTGGTTCATTCACTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAgg                                                             >  1:14158895/1‑68 (MQ=255)
        gTGGTTCATTCACTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAgg                                                             >  1:20358782/1‑68 (MQ=255)
        gTGGTTCATTCACTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAgg                                                             >  1:11434194/1‑68 (MQ=255)
          tcccagtcccactggtcaacatagaccgagtgcatcggagaaagacggtcttcatctGGGCGAAGGGc                                                           >  1:14415553‑M1/58‑68 (MQ=255)
          tcccagtcccactggtcaacatagaccgagtgcaacggagaaagacggtcttcatcgGGGCGAAGGGc                                                           >  1:19765986‑M1/58‑68 (MQ=255)
          tcccagtcccactggtcaacatagaccgagtgcaacggagaaagacggtcttcatcgGGGCGAAGGGc                                                           >  1:27932277‑M1/58‑68 (MQ=255)
          tcccagtcccactggtcaacatagaccgagtgcaacggagaaagacggtcttcatcgGGGCGAAGGGc                                                           >  1:7570347‑M1/58‑68 (MQ=255)
          tcccagtcccactggtcaacatagaccgagtgcaacggagaaagacggtcttcatcgGGGCGAAGGGc                                                           >  1:16577303‑M1/58‑68 (MQ=255)
          tcccagtcccactggtcaacatagaccgagtgcaacggagaaagacggtcttcatcgGGGCGAAGGGc                                                           >  1:10848371‑M1/58‑68 (MQ=255)
          ggTTCATTCACTGGCGAAGTGGAAACGTCAGACCTTCGGGCAACACGACTTCAGCGCGGGCGAAGGGc                                                           <  1:1175360/68‑1 (MQ=255)
          ggTTCATTCACTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAggg                                                            <  1:17732591/67‑1 (MQ=255)
          ggTTCATTCACTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAgg                                                             <  1:12422006/66‑1 (MQ=255)
          ggTTCATTCACTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAgg                                                             <  1:21951443/66‑1 (MQ=255)
          ggTTCATTCACTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAgg                                                             <  1:4775472/66‑1 (MQ=255)
          ggTTCATTCACTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAgg                                                             <  1:3003194/66‑1 (MQ=255)
          ggTTCATTCACTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGc                                                           <  1:31343095/68‑1 (MQ=255)
          ggTTCATTCACTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGc                                                           <  1:29107586/68‑1 (MQ=255)
          ggTTCATTCACTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGc                                                           <  1:10001230/68‑1 (MQ=255)
          ggTTCATTCACTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGc                                                           <  1:13584648/68‑1 (MQ=255)
             tcattcaCTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGt                                                        <  1:13396014/68‑1 (MQ=255)
             tcattcaCTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGt                                                        <  1:22271208/68‑1 (MQ=255)
             tcattcaCTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGt                                                        <  1:2650218/68‑1 (MQ=255)
              cattcaCTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTa                                                       <  1:19276522/68‑1 (MQ=255)
               attcaCAGGCGACGTGGAACCGGCAGACCTTCGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTa                                                       <  1:23362635/67‑1 (MQ=255)
                tcccactggtcaacatagaccgagtgcaacggagaaagacggtcttcatcgGGGCGAAGGGCTGTac                                                      <  1:9677866‑M1/16‑1 (MQ=255)
                 tcaCTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTtcac                                                    >  1:15179731/1‑68 (MQ=255)
                 tcaCTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTacac                                                    >  1:26651327/1‑68 (MQ=255)
                  caCTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTaccc                                                    >  1:8024244/1‑65 (MQ=255)
                  caCTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTacac                                                    >  1:3604412/1‑67 (MQ=255)
                  caCTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACg                                                   <  1:24333169/68‑1 (MQ=255)
                  caCTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACg                                                   <  1:7189315/68‑1 (MQ=255)
                    cTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGca                                                 <  1:3812747/68‑1 (MQ=255)
                    cTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGca                                                 <  1:30524579/68‑1 (MQ=255)
                    cTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGc                                                  >  1:21816311/1‑67 (MQ=255)
                      ggCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGcaca                                               <  1:12693088/68‑1 (MQ=255)
                        cGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACAt                                              <  1:22669924/67‑1 (MQ=255)
                         tcaacatagaccgagtgcaacggagaaagacggtcttcatcgGGGCGAAGGGCGGTACACGCGCAtgg                                            <  1:12075351‑M1/26‑2 (MQ=255)
                         gAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATg                                             <  1:30288818/67‑1 (MQ=255)
                         gAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATg                                             <  1:23547350/67‑1 (MQ=255)
                           aGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGaaa                                          >  1:28883705/1‑68 (MQ=255)
                           aGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACAAGaaa                                          >  1:10232437/1‑68 (MQ=255)
                             tGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGc                                                           <  1:19615486/49‑1 (MQ=255)
                             tGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAg                                         >  1:1296495/1‑67 (MQ=255)
                             tGGAAACGTCAGACCTTAGGGCAACACGACTTCAGAGCGGGCGAAGGGCTGTACACGCACATGAAAg                                         >  1:4191424/1‑67 (MQ=255)
                              ggAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGcc                                       <  1:18837381/68‑1 (MQ=255)
                              atagaccgagtgcaacggagaaagacggtcttcatcgGGGCGAAGGGCTGTACACGCACATGAAAGc                                        <  1:9111133‑M1/30‑1 (MQ=255)
                              atagaccgagtgcaacggagaaagacggtcttcatcgGGGCGAAGGGCTGTACACGCACATGAAAGc                                        <  1:31201845‑M1/30‑1 (MQ=255)
                                 aaCGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGAACACGCACATGAAAGCCCt                                     >  1:26916983/1‑67 (MQ=255)
                                  accgagtgcaacggagaaagacggtcttcatcgGGGCGAAGGGCTGTTCACGCCCATGAaagcccgtg                                   <  1:25375199‑M1/35‑4 (MQ=255)
                                   ccgagtgcaacggagaaagacggtcttcatcgGGGCGAAGGGGTGTACCCGCACATGAAAGCCCTTc                                   <  1:8699052‑M1/35‑1 (MQ=255)
                                   ccgagtgcaacggagaaagacggtcttcatcgGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTc                                   <  1:10570729‑M1/35‑1 (MQ=255)
                                   ccgagtgcaacggagaaagacggtcttcatcgGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTc                                   <  1:26762199‑M1/35‑1 (MQ=255)
                                   cGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTc                                   >  1:23812664/1‑67 (MQ=255)
                                   cGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTc                                   >  1:1865118/1‑67 (MQ=255)
                                   cGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTc                                   >  1:24125221/1‑67 (MQ=255)
                                    gTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGc                                 <  1:14829176/68‑1 (MQ=255)
                                         aCCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGa                            >  1:21521432/1‑68 (MQ=255)
                                          ccTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGcccc                              <  1:9620781/65‑1 (MQ=255)
                                          ccTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGa                            <  1:28626450/67‑1 (MQ=255)
                                          ccTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGa                            <  1:22520416/67‑1 (MQ=255)
                                          ccTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGAt                           >  1:29202533/1‑68 (MQ=255)
                                          ccTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGAt                           >  1:6024271/1‑68 (MQ=255)
                                          ccTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGAt                           >  1:2610339/1‑68 (MQ=255)
                                            ttAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGa                         >  1:2954009/1‑68 (MQ=255)
                                             tAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGaa                        <  1:6392295/68‑1 (MQ=255)
                                               gggCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAg                       >  1:8323304/1‑67 (MQ=255)
                                                ggCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGa                      >  1:22871600/1‑67 (MQ=255)
                                                 gCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATTAAAGCCCTTCGCCCCGATGAAGccc                    >  1:3411866/1‑68 (MQ=255)
                                                 gCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGa                      <  1:15607518/66‑1 (MQ=255)
                                                 gCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGAcc                    >  1:13861177/1‑68 (MQ=255)
                                                 gCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGAcc                    >  1:6943607/1‑68 (MQ=255)
                                                 gCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGAcc                    >  1:25592922/1‑68 (MQ=255)
                                                 gCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGAcc                    >  1:19004222/1‑68 (MQ=255)
                                                  cAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGAcc                    <  1:21240370/67‑1 (MQ=255)
                                                   aaCACGACTTCAGCGCGGTCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGt                  <  1:570383/68‑1 (MQ=255)
                                                   aaCACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGt                  <  1:27274007/68‑1 (MQ=255)
                                                    acacGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTc                 <  1:11119696/68‑1 (MQ=255)
                                                     gacggtcttcatcgGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGaccggct                <  1:1573010‑M1/54‑4 (MQ=255)
                                                     gacggtcttcatcgGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCt                <  1:27452629‑M1/54‑1 (MQ=255)
                                                      acGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCtt               >  1:21006920/1‑68 (MQ=255)
                                                      acGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAACCCCTTCGCCCCGATGAAGACCGTCtt               <  1:14642640/68‑1 (MQ=255)
                                                           ttCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTcc          <  1:8928853/68‑1 (MQ=255)
                                                            tCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCg         >  1:31993619/1‑68 (MQ=255)
                                                               gcgcGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGCCCGTCTTTCTCCGtt       >  1:24509275/1‑67 (MQ=255)
                                                                cgcgGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGCTGAAGACCGTCTTTCTCCGTTGc     >  1:17127647/1‑68 (MQ=255)
                                                                cgcgGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTGTTTCTCCGTTGc     >  1:308933/1‑68 (MQ=255)
                                                                cgcgGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGc     >  1:9452396/1‑68 (MQ=255)
                                                                cgcgGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGc     >  1:10317276/1‑68 (MQ=255)
                                                                 gcgGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCa    <  1:18272565/68‑1 (MQ=255)
                                                                 gcgGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCa    <  1:2068751/68‑1 (MQ=255)
                                                                   |                                                                   
AGTTCGAAGTGGTTCATTCACTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACT  >  CP009273/3920711‑3920845

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.