New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 3920778 =405 (1.050)44 (0.150) 13/88 NT 12.4% coding (264/993 nt) asnA asparagine synthetase A
?CP009273 3920817 = 304 (1.000)coding (303/993 nt) asnA asparagine synthetase A

Only 100 of 828 total aligned reads displayed.

ACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGACTGGGAACGCGTAATGG  >  CP009273/3920752‑3920884
                                                                 |                                                                   
 ccTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGcccc                                                                     <  1:27473041/65‑1 (MQ=255)
 ccTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGa                                                                   <  1:25339821/67‑1 (MQ=255)
 ccTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGAt                                                                  >  1:10316600/1‑68 (MQ=255)
 ccTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGAt                                                                  >  1:29668861/1‑68 (MQ=255)
 ccTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGAt                                                                  >  1:18961176/1‑68 (MQ=255)
 ccTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGAt                                                                  >  1:1878407/1‑68 (MQ=255)
      gggCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAg                                                              >  1:8323304/1‑67 (MQ=255)
       ggCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGa                                                             >  1:18048340/1‑67 (MQ=255)
       ggCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGa                                                             >  1:9503904/1‑67 (MQ=255)
        gCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATTAAAGCCCTTCGCCCCGATGAAGccc                                                           >  1:3411866/1‑68 (MQ=255)
        gCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGa                                                             <  1:12050838/66‑1 (MQ=255)
        gCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGAcc                                                           >  1:9240263/1‑68 (MQ=255)
        gCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGAcc                                                           >  1:17036339/1‑68 (MQ=255)
        gCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGAcc                                                           >  1:24186723/1‑68 (MQ=255)
        gCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGAcc                                                           >  1:24870230/1‑68 (MQ=255)
        gCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGAcc                                                           >  1:13861177/1‑68 (MQ=255)
          aagacggtcttcatcggggcgaagggctttcatgtgcgtgtacagcccttcgcccCGATGAAGACCGt                                                         <  1:21735737‑M2/13‑1 (MQ=255)
          aaCACGACTTCATCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGt                                                         <  1:5537113/68‑1 (MQ=255)
          aaCACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGt                                                         <  1:10871040/68‑1 (MQ=255)
          aaCACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGt                                                         <  1:27274007/68‑1 (MQ=255)
            cacGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCt                                                       <  1:14146423/68‑1 (MQ=255)
             acggtcttcatcgGGGCGAAGGGCTGTTCCCGCACATGAAAGCCCTTCGCCCCGATGAAGACCGGCtt                                                      <  1:6817568‑M1/55‑1 (MQ=255)
             acGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCtt                                                      >  1:3639390/1‑68 (MQ=255)
             acGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCtt                                                      <  1:2140637/68‑1 (MQ=255)
              cggtcttcatcggggcgaagggctttcatgtgcgtgaccagcccttcgcccCGATGAAGACCGTCt                                                       <  1:31275878‑M2/15‑1 (MQ=255)
                  ttCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTcc                                                 <  1:11067179/68‑1 (MQ=255)
                   tCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGCCCGTCTTTCTCCg                                                >  1:25720238/1‑68 (MQ=255)
                   tCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCg                                                >  1:14444402/1‑68 (MQ=255)
                    cAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGt                                               <  1:26671430/68‑1 (MQ=255)
                      gcgcGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGCCCGTCTTTCTCCGtt                                              >  1:24509275/1‑67 (MQ=255)
                       tcgTGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGCCCGTCTTTCTCCGTTGc                                            <  1:2709872‑M1/65‑1 (MQ=255)
                       tcgGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGc                                            <  1:7971987‑M1/65‑1 (MQ=255)
                       cgcgGGCGAAGGGCCGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGc                                            >  1:6967192/1‑68 (MQ=255)
                        gcgGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCa                                           <  1:2068751/68‑1 (MQ=255)
                         ggggcgaagggctttcttgggcgggtccacccctgCGCCCCGATGAAGACCGTCTTTCGCCGTTGCa                                           <  1:1671153‑M2/32‑1 (MQ=255)
                           GGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTc                                        <  1:8233467‑M1/68‑1 (MQ=255)
                             CGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCg                                       >  1:2916606‑M1/1‑67 (MQ=255)
                             CGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCg                                       >  1:20318774‑M1/1‑67 (MQ=255)
                             CGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCg                                       >  1:17847221‑M1/1‑67 (MQ=255)
                              gtAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCgg                                      >  1:19869715‑M1/3‑67 (MQ=255)
                              gaagggctttcatgtgcgtgtacagcccttcgcccCGATGAAGACCGTCTTTCTCCGTTGCACTCgg                                      <  1:10570729‑M2/32‑1 (MQ=255)
                              GAAGGGCTGTAGACGCACATGAAAGCCCTTCGCCGCGATGAAGAGCGTCTTTCTCCGTTGCACTCgg                                      >  1:19554562‑M1/1‑67 (MQ=255)
                              GAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCgg                                      >  1:20464052‑M1/1‑67 (MQ=255)
                              GAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCgg                                      >  1:12575168‑M1/1‑67 (MQ=255)
                              GAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCgg                                      >  1:31652403‑M1/1‑67 (MQ=255)
                              GAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCgg                                      >  1:410351‑M1/1‑67 (MQ=255)
                              GAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCgg                                      >  1:29986711‑M1/1‑67 (MQ=255)
                              GAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCgg                                      >  1:23335323‑M1/1‑67 (MQ=255)
                              GAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCgg                                      >  1:8714452‑M1/1‑67 (MQ=255)
                              GAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCgg                                      >  1:16481457‑M1/1‑67 (MQ=255)
                              GAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGt                                     >  1:25977194‑M1/1‑68 (MQ=255)
                              GAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGt                                     >  1:20118109‑M1/1‑68 (MQ=255)
                                  GGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTAt                                 <  1:23815027‑M1/68‑1 (MQ=255)
                                   GCTGTACACGCAGATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTAt                                 >  1:15275240‑M1/1‑67 (MQ=255)
                                   GCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTa                                  >  1:2296387‑M1/1‑66 (MQ=255)
                                   GCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTAt                                 >  1:30774380‑M1/1‑67 (MQ=255)
                                   GCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTAt                                 >  1:8810793‑M1/1‑67 (MQ=255)
                                   GCTGTACACGCACATGAAAGCCCTTCGCCACGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTAt                                 >  1:4349061‑M1/1‑67 (MQ=255)
                                     TGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGt                               >  1:28093645‑M1/1‑67 (MQ=255)
                                       ccatgtgcgtgtacagccctgCGCCCCGATGAAGACCGTCTTTCGCCGTTGCACTCGGTCTATGTTGa                            <  1:15920274‑M2/47‑1 (MQ=255)
                                        acacGCACATGAAAGCCCTTCGCCCCGATGAAGCCCGTCTTTCTCCGTTGCACTCGGTCTATGTTGa                            >  1:5748229/1‑67 (MQ=255)
                                        acacGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGa                            >  1:29376121/1‑67 (MQ=255)
                                        acacGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGa                            <  1:11566613/67‑1 (MQ=255)
                                        acacGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGa                            >  1:25505845/1‑67 (MQ=255)
                                        acacGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGa                            >  1:381407/1‑67 (MQ=255)
                                        acacGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGa                            >  1:19194373/1‑67 (MQ=255)
                                         cacGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGAcc                          >  1:4684291/1‑68 (MQ=255)
                                         cacGCACATGAAAGCCCTTCGCCCCAATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGAcc                          <  1:2514921/68‑1 (MQ=255)
                                          acGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCa                         >  1:26845488/1‑68 (MQ=255)
                                          acGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCa                         >  1:2272099/1‑68 (MQ=255)
                                          acGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCa                         >  1:21935272/1‑68 (MQ=255)
                                            gCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGt                       <  1:8559484/68‑1 (MQ=255)
                                            gCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGt                       <  1:11304600/68‑1 (MQ=255)
                                             cacaTGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTg                      >  1:7569527/1‑68 (MQ=255)
                                             cacaTGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTg                      >  1:16065739/1‑68 (MQ=255)
                                             cacaTGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTg                      >  1:13253442/1‑68 (MQ=255)
                                             cacaTGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTg                      >  1:22312357/1‑68 (MQ=255)
                                             cacaTGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTg                      >  1:12224958/1‑68 (MQ=255)
                                             cacaTGAAAGCCCTTAGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTg                      >  1:18611327/1‑68 (MQ=255)
                                              acaTGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTgg                     <  1:10763122/68‑1 (MQ=255)
                                              acaTGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTgg                     <  1:4813419/68‑1 (MQ=255)
                                                aTGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTGCGTTGCACTCGGTCTATGTTGACCAGTGGGa                   <  1:2840719/68‑1 (MQ=255)
                                                aTGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGATCAGTGGGa                   <  1:30192864/68‑1 (MQ=255)
                                                aTGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGa                   <  1:5153466/68‑1 (MQ=255)
                                                aTGAAACCCCTTCGCCCCGAGGAAGACCGTCTTTCTCCGTTGCACTCGGGCTATGTTGACCAGTGGGa                   <  1:29015335/68‑1 (MQ=255)
                                                 gcacacccccgCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGa                   <  1:7217869‑M2/56‑1 (MQ=255)
                                                    aaGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGACTgg               >  1:31913418/1‑68 (MQ=255)
                                                    aaGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGACTg                <  1:6265471/67‑1 (MQ=255)
                                                      gcccttcgcccCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGACTGGGa             >  1:26326490‑M2/12‑68 (MQ=255)
                                                      gcccttcgcccCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGACTGGGa             >  1:15666009‑M2/12‑68 (MQ=255)
                                                      gcccttcgcccCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGACTGGGa             >  1:14822555‑M2/12‑68 (MQ=255)
                                                      gcccttcgcccCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGACTGGGa             >  1:13520883‑M2/12‑68 (MQ=255)
                                                        ccttcgcccCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGACTGGGAAc           >  1:9737444‑M2/10‑68 (MQ=255)
                                                         cttcgcccCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGACTGGGAAcg          <  1:14662652‑M2/60‑1 (MQ=255)
                                                         cttcgcccCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGACTGGGAAcg          <  1:17444430‑M2/60‑1 (MQ=255)
                                                         cttcgcccCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGACTGGGAAcg          <  1:30493538‑M2/60‑1 (MQ=255)
                                                          ttcgcccCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGACTGGGAAcgc         <  1:28677907‑M2/61‑1 (MQ=255)
                                                           tcgcccCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGACTGGGAAcgcg        <  1:6546194‑M2/62‑1 (MQ=255)
                                                           tcgcccCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGACTGGGAAcgcg        <  1:10012934‑M2/62‑1 (MQ=255)
                                                            cGCCCCGAGCACGCCCGTCGTGCACCGCGGCACCCGGTCAATGTTGACCAGTGGGACTGGGAAcgcg        <  1:21063022/67‑1 (MQ=255)
                                                                 |                                                                   
ACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGACTGGGAACGCGTAATGG  >  CP009273/3920752‑3920884

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.