New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 3999963	514 (1.340)	20 (0.060)	6/98	NT	5.0%	coding (740/1830 nt)	recQ	ATP‑dependent DNA helicase
	?	CP009273	= 4000007	304 (0.900)					coding (784/1830 nt)	recQ	ATP‑dependent DNA helicase

CTCGATCAGTTGATGCGCTACGTGCAGGAACAGCGCGGTAAGTCAGGCATTATCTACTGCAACAGCCGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/3999893‑3999963 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgcgcTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCGGCTGTTGCAGTAGATAA  <  CP009273/4000007‑3999942                                                                                                                                           CTCGATCAGTTGATGCGCTACGTGCAGGAACAGCGCGGTAAGTCAGGCATTATCTACTGCAACAGCC                                                                        >  1:30705106/1‑67  TCGATCAGTTGATGCGCTACGTGCAGGAACAGCGCGGTAAGTCAGGCATTATCTACTGCAACAGCCGC                                                                      <  1:29924146/68‑1  TCGATCAGTTGATGCGCTACGTGCAGGAACAGCGCGGTAAGTCAGGCATTATCTACTGCAACAGCCGC                                                                      <  1:17672099/68‑1  TCGATCAGTTGATGCGCTACGTGCAGGAACAGCGCGGTAAGTCAGGCATTATCTACTGCAACAGCCGC                                                                      <  1:15434592/68‑1   CGATCAGTTGATGCGCTACGTGCAGGAACAGCGCGGTAAGTCAGGCATTATCTACTGCAACAGCCGCG                                                                     <  1:14129933/68‑1   CGATCAGTTGATGCGCTACGTGCAGGAACAGCGCGGTAAGTCAGGCATTATCTACTGCAACAGCCGCG                                                                     <  1:3205194/68‑1   CGATCAGTTGAGGCGCTACGTGCAGGAACAGCGCGGTAAGTCAGGCATTATCTACTGCAACAGCCGCG                                                                     <  1:438995/68‑1                             AACAGCGCGGTAAGTCAGGCATTATCTACTGCAACAG                                                                          >  1:5008805/1‑37                              ACAGCGCGGTAAGTCAGGCATTATATACTGCAACAGCCGCGCTAATTCCCTTGCTTTGGAGGCGCGCA                                          >  1:6106194/1‑68                                                 ATTATCTACTGCAACAGCCGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTC                        >  1:881609/1‑67                                                     TCTACTGCAACAGCCGCGCTAATTCCGTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCG                   >  1:20951723/1‑68                                                     TCTACTGCAACAGCCGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTGTTCTACTTTCGCGCG                   >  1:18022692/1‑68                                                     TCTACTGCAACAGCCGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCG                   >  1:18029481/1‑68                                                     TCTACTGCAACAGCCGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCG                   >  1:22859240/1‑68                                                     TCTACTGCAACAGCCGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCG                   >  1:17437839/1‑68                                                     TCTACTGCAACAGCCGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCG                   >  1:17039144/1‑68                                                     TCTACTGCAACAGCCGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCG                   >  1:4826516/1‑68                                                     TCTACTGCAACAGCCGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCG                   >  1:4826525/1‑68                                                      CTACTGCAACAGCCGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTGTACTTTCGCGgg                   >  1:24528619/1‑65                                                      CTACTGCAACAGCCGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCG                   >  1:12201370/1‑67                                                          TGCAACAGCCGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCGGCTGT              >  1:30100679/1‑68                                                           GCAACAGCCGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTGTACTTTCGCGCGGCTGTT             >  1:19469654/1‑68                                                           GCAACAGCCGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTAGTTTCGCGCGGCTGTT             >  1:14550901/1‑68                                                           GCAACAGCCGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCGGCTGTT             >  1:4653658/1‑68                                                           GCAACAGCCGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCGGCTGTT             >  1:25458985/1‑68                                                           GCAACAGCCGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCGGCTGTT             >  1:10027139/1‑68                                                           GCAACAGCCGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCGGCTGTT             >  1:2336260/1‑68                                                           GCAACAGCCGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCGGCTGTT             >  1:12425673/1‑68                                                             AACAGCCGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCGGCTGTTGC           >  1:29588082/1‑68                                                             AACAGCCGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCGGCTGTTGC           >  1:11254132/1‑68                                                             AACAGCCGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCGGCTGTTGC           >  1:2421034/1‑68                                                             AACAGCCGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCGGCTGTTGC           >  1:30742066/1‑68                                                               CAGCCGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCGGCTGTTGCAG         >  1:30284870/1‑68                                                               CAGCCGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCGGCTGTTGCAG         >  1:12259557/1‑68                                                                AGCCGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCGGCTGTTGCAGT        >  1:5527535/1‑68                                                                AGCCGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCGGCTGTTGCAGT        >  1:20403134/1‑68                                                                 GCCGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCGGCTGTTGCAGTA       >  1:20396502/1‑68                                                                 GCCGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCGGCTGTTGCAGTA       >  1:5174821/1‑68                                                                 GCCGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCGGCTGTTGCAGTA       >  1:1438746/1‑68                                                                 GCCGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCGGCTGTTGCAGTA       <  1:5428451/68‑1                                                                 GCCGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCGGCTGTTGCAGTA       >  1:23996633/1‑68                                                                 GCCGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCGGCTGTTGCAGTA       >  1:23677694/1‑68                                                                 GCCGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCGGCTGTTGCAGTA       >  1:12902243/1‑68                                                                 GCCGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCGGCTGTTGCAGTA       >  1:4106803/1‑68                                                                  CCGCGCTCATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCGGCTGTTGCAGTAG      >  1:13116264/1‑68                                                                  CCGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCGGCTGTTGCAGTAG      >  1:10760475/1‑68                                                                   CGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCGGCTGTTGCAGTAGA     <  1:4332073/68‑1                                                                   CGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCGGCTGTTGCAGTAGA     <  1:31960501/68‑1                                                                   CGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCGGCTGTTGCAGTAGA     <  1:3251369/68‑1                                                                   CGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCGGCTGTTGCAGTAGA     <  1:9060223/68‑1                                                                   CGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCGGCTGTTGCAGTAGA     <  1:10162629/68‑1                                                                   CGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCGGCTGTTGCAGTAGA     <  1:10206571/68‑1                                                                   CGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCGGCTGTTGCAGTAGA     <  1:28125409/68‑1                                                                   CGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCGGCTGTTGCAGTAGA     <  1:25869891/68‑1                                                                   CGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCGGCTGTTGCAGTAGA     <  1:10255180/68‑1                                                                   CGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCGGCTGTTGCAGTAGA     <  1:22928075/68‑1                                                                   CGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCGGCTGTTGCAGTAGA     <  1:20694992/68‑1                                                                   CGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCGGCTGTTGCAGTAGA     <  1:14520350/68‑1                                                                   CGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCGGCTGTTGCAGTAGA     <  1:1468928/68‑1                                                                   CGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCGGCTGTTGCAGTAGA     <  1:1817764/68‑1                                                                   CGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCGGCTGTTGCAGTAGA     <  1:14796102/68‑1                                                                   CGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCGGCTGTTGCAGTAGA     <  1:14823680/68‑1                                                                   CGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCGGCTGTTGCAGTAG      <  1:29357874/67‑1                                                                   CGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCGGCTGTTGCAGTAG      <  1:7580614/67‑1                                                                   CGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCGGCTGTTGCAGTAG      <  1:6369221/67‑1                                                                   CGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCGGCTGTTGCAGTAG      <  1:12189478/67‑1                                                                   CGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCGGCTGTTGCAGTAG      <  1:12805249/67‑1                                                                   CGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCGGCTGTTGCAGTAG      <  1:4801014/67‑1                                                                   CGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCGGCTGTTGCAGTAG      <  1:20311407/67‑1                                                                   CGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCGGCTGTTGCAGTAG      <  1:20579748/67‑1                                                                   CGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCGGCTGTTGCAGTAG      <  1:21994201/67‑1                                                                   CGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCGGCTGTTGCAGTAG      <  1:3134294/67‑1                                                                   CGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCGGCTGTTGCAGTAG      <  1:23797370/67‑1                                                                   CGCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCGGCTGTTGCAGTAG      <  1:29397342/67‑1                                                                   CGCGCCAATTCCCTTGCTTTGCAGGTGCGCAGCGGTGTCTTCTACTTTCGCGCGGCTGTTGCAGTAG      <  1:13947810/67‑1                                                                    GCGCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCGGCTGTTGCAGTAGAT    <  1:3713223/68‑1                                                                      GCTAATTCCCTTGCTTTGCAGGCGCGCAGGGGTGTCGTCTACATTCGCGCGGCGGTTGCAGTAGATAA  >  1:21860082/1‑68                                                                      GCTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCGGCTGTTGCAGTAGATAA  >  1:9450258/1‑68                                                                                                                                           CTCGATCAGTTGATGCGCTACGTGCAGGAACAGCGCGGTAAGTCAGGCATTATCTACTGCAACAGCCGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/3999893‑3999963 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgcgcTAATTCCCTTGCTTTGCAGGCGCGCAGCGGTGTCTTCTACTTTCGCGCGGCTGTTGCAGTAGATAA  <  CP009273/4000007‑3999942

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.