New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 = 3999963514 (1.340)20 (0.060) 6/98 NT 5.0% coding (740/1830 nt) recQ ATP‑dependent DNA helicase
?CP009273 = 4000007 304 (0.900)coding (784/1830 nt) recQ ATP‑dependent DNA helicase

Only 100 of 529 total aligned reads displayed.

CATTATCTACTGCAACAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGCGGCGGCCTATCATGCCGGGCTGGAAAATAATGTTCGCGCCGATGTGCAGGAAAAATTCCAGCG  >  CP009273/3999940‑4000074
                                                                   |                                                                   
cATTATCTACTGCAACAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTa                                                                     >  1:16112659/1‑68 (MQ=255)
 aTTATCTACTGCAACAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTa                                                                     >  1:22378958/1‑67 (MQ=255)
 aTTATCTACTGCAACAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTa                                                                     >  1:10492634/1‑67 (MQ=255)
 aTTATCTACTGCAACAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTa                                                                     >  1:24593783/1‑67 (MQ=255)
 aTTATCTACTGCAACAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTa                                                                     >  1:11771091/1‑67 (MQ=255)
 aTTATCTACTGCAACAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTa                                                                     >  1:29308519/1‑67 (MQ=255)
 aTTATCTACTGCAACAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTa                                                                     >  1:3988273/1‑67 (MQ=255)
 aTTATCTACTGCAACAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTa                                                                     >  1:4408245/1‑67 (MQ=255)
  ttttCTACTGCAACAGCCGCGCGTAAGATGAAGCCACCGCTGCTCGCCTGCAAAGCAAGGGAATTAgc                                                                   <  1:9019871/65‑1 (MQ=255)
  ttATCTACTGCAACCGCCGCGCGAATGTAGACGACACCCCTGCGCGCCTGCAAAGCAAGGGAATTAgc                                                                   >  1:21860082‑M2/1‑66 (MQ=255)
    aTCTACTGCAACAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAgcgc                                                                 <  1:3713223‑M2/68‑5 (MQ=255)
     tCTACTGCAACAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAgcgcg                                                                <  1:10206571‑M2/68‑6 (MQ=255)
     tCTACTGCAACAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAgcgcg                                                                <  1:28125409‑M2/68‑6 (MQ=255)
     tCTACTGCAACAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAgcgcg                                                                <  1:14796102‑M2/68‑6 (MQ=255)
      cTACTGCAACAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAgcgcg                                                                <  1:6369221‑M2/67‑6 (MQ=255)
      cTACTGCAACAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAgcgcg                                                                <  1:21994201‑M2/67‑6 (MQ=255)
      cTACTGCAACAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAgcgcg                                                                <  1:3134294‑M2/67‑6 (MQ=255)
       tACTGCAACAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAgcgcggc                                                              >  1:5174821‑M2/1‑61 (MQ=255)
        aCTGCAACAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCgcggcg                                                             >  1:20220707/1‑68 (MQ=255)
        aCTGCAACAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCgcggcg                                                             >  1:15186976/1‑68 (MQ=255)
        aCTGCAACAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCgcggcg                                                             >  1:27082337/1‑68 (MQ=255)
        aCTGCAACAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCgcggcg                                                             >  1:24154599/1‑68 (MQ=255)
        aCTGCAACAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCgcggcg                                                             >  1:28277046/1‑68 (MQ=255)
        aCTGCAACAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGCGAATTAGCgcggcg                                                             >  1:7614543/1‑68 (MQ=255)
         cTGCAACAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAgcgcggctg                                                            >  1:12259557‑M2/1‑59 (MQ=255)
         cTGCAACAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGcggcgg                                                            <  1:20788278/68‑1 (MQ=255)
         cTGCAACAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGcggcgg                                                            <  1:9213630/68‑1 (MQ=255)
         cTGCAACAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGcggcgg                                                            <  1:8645810/68‑1 (MQ=255)
          tGCAACAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGcggcggt                                                           <  1:1748200/68‑2 (MQ=255)
          tGCAACAGCCGCGCGAAAGTAGAAGACAACGCTGCGCTCCTGCAAAGCAAGGGAATTAGggcggcggc                                                           <  1:30154528/68‑1 (MQ=255)
           gCAACAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGcggcgg                                                            >  1:18053725/1‑66 (MQ=255)
           gCAACAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGcggcgg                                                            >  1:29684497/1‑66 (MQ=255)
           gCAACAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGcggcgg                                                            >  1:27614090/1‑66 (MQ=255)
           gCAACAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGcggcgg                                                            >  1:12539199/1‑66 (MQ=255)
           gCAACAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGcggcgg                                                            >  1:10841592/1‑66 (MQ=255)
           gCAACAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGcggcgg                                                            >  1:14998686/1‑66 (MQ=255)
           gCAACAGCCGCACGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGcggcgg                                                            >  1:13631691/1‑66 (MQ=255)
             aaCAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAgcgcggctgttgc                                                        >  1:10027139‑M2/1‑55 (MQ=255)
             aaCAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGCGTCGGCCTa                                                        >  1:6872828/1‑68 (MQ=255)
             aaCAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGCGGCGGCCt                                                         <  1:19053810/67‑1 (MQ=255)
             aaCAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGCGGCGGCCt                                                         <  1:2353667/67‑1 (MQ=255)
             aaCAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGCGGCGGCCt                                                         <  1:30708130/67‑1 (MQ=255)
             aaCAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGCGGCAGCCt                                                         <  1:24343256/67‑1 (MQ=255)
             aaCAGCCGCGCGAAAGTACAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAgcgcggctgttgc                                                        >  1:19469654‑M2/1‑55 (MQ=255)
                aGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGCGGCGGCCTATCa                                                     >  1:14431398/1‑68 (MQ=255)
                 gCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGCGGCGGCCTATCAt                                                    >  1:13301032/1‑68 (MQ=255)
                  ccGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCATAGCAAGGGAATTAGCGCGGCGGCCTATCAt                                                    >  1:24822314/1‑67 (MQ=255)
                  ccGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGCGGCGGCCTATCAt                                                    >  1:31746409/1‑67 (MQ=255)
                  ccGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGCGGCGGCCTATCAt                                                    >  1:112073/1‑67 (MQ=255)
                   cgcgcgAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAgcgcggctgttgcagtaga                                                  >  1:17039144‑M2/1‑49 (MQ=255)
                           aGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGCGGCGGCCTATCATGCCGGGCTgg                                          <  1:4604328/68‑1 (MQ=255)
                           aGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGCGGCGGCCTATCATGCCGGGCTgg                                          <  1:25348790/68‑1 (MQ=255)
                              agaagaCACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGCGGCGGCCTATCATGCCGGGCTGGaa                                        <  1:17742740/67‑1 (MQ=255)
                              agaagaCACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGCGGCGGCCTATCATGCCGGGCTGGaa                                        <  1:7888902/67‑1 (MQ=255)
                              agaagaCACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGCGGCGGCCTATCATGCCGGGCTGGaa                                        <  1:23753026/67‑1 (MQ=255)
                                aagaCACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGCGGCGGCCTATCATGCCGTGCTGGAAaat                                     >  1:8779979/1‑68 (MQ=255)
                                aagaCACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGCGGCGGCCTATCATGCCGGGCTGGAAaat                                     >  1:23167883/1‑68 (MQ=255)
                                aagaCACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGCGGCGGCCTATCATGCCGGGCTGGAAaat                                     >  1:25507998/1‑68 (MQ=255)
                                 agaCACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGCGGCGGCCTATCATGCCGGGCTGGaaaa                                      <  1:13842650/66‑1 (MQ=255)
                                 agaCACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGCGGCGGCCTATCATGCCGGGCTGGaaaa                                      <  1:2987398/66‑1 (MQ=255)
                                 agaCACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGCGGCGGCCTATCATGCCGGGCTGGAAaata                                    >  1:22480141/1‑68 (MQ=255)
                                 agaCACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGCGGCGGCCTATCATGCCGGGCTGGAAaat                                     <  1:26622533/67‑1 (MQ=255)
                                   acacCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGCGGCGGCCTATCATGCCGGGCTGGAAaataat                                  >  1:15647080/1‑68 (MQ=255)
                                   acacCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGCGGCGGCCTATCATGCCGGGCTGGAAaataat                                  >  1:31187822/1‑68 (MQ=255)
                                   acacCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGCGGCGGCCTATCATGCCGGGCTGGAAaataat                                  >  1:31632521/1‑68 (MQ=255)
                                   acacCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGCGGCGGCCTATCATGCCGGGCTGGAAaataat                                  >  1:1589720/1‑68 (MQ=255)
                                   acacCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGCGGCGGCCTATCATGCCGGGCTGGAAaataat                                  >  1:30401398/1‑68 (MQ=255)
                                   acacCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGCGGCGGCCTATCATGCCGGGCTGGAAaataat                                  >  1:21059756/1‑68 (MQ=255)
                                   acacCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGCGGCGGCCTATCATGCCGGGCTGGAAaataat                                  >  1:3417466/1‑68 (MQ=255)
                                   acacCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGCGGCGGCCTATCATGCCGGGCTGGAAaataat                                  >  1:18352243/1‑68 (MQ=255)
                                   acacCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGCGGCGGCCTATCATGCCGGGCTGGAAaataat                                  >  1:18596805/1‑68 (MQ=255)
                                   acacCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGCGGCGGCCTATCATGCCGGGCTGGAAaataat                                  >  1:11539558/1‑68 (MQ=255)
                                   acacCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGCGGCGGCCTATCATGCCGGGCTGGAAaataat                                  >  1:12102322/1‑68 (MQ=255)
                                    cacCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGCGGCGGCCTATCATGCCGGGCTGGAAAATAATg                                 >  1:16285156/1‑68 (MQ=255)
                                    cacCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGCGGCGGCCTATCATGCCGGGCTGGAAAATAATg                                 <  1:27408381/68‑1 (MQ=255)
                                          tGCGCGCCTGCAAAGCAAGGGAATTAGCGCGGCGGCCTATCATGCCGGGCTGGAAAATAATGTTcgc                            >  1:7369727/1‑67 (MQ=255)
                                          tGCGCGCCTGCAAAGCAAGGGAATTAGCGCGGCGGCCTATCATGCCGGGCTGGAAAATAATGTTcgc                            >  1:4939279/1‑67 (MQ=255)
                                          tGCGCGCCTCCAAAGCAAGGGAATTAgcgcggctgttgcagtatataatgcctgacttaccgcgctgt                           >  1:6106194‑M2/1‑26 (MQ=255)
                                             gcgcCTGCAAAGCAAGGGAATTAGCGCGGCGGCCTATCATGCCGGGCTGGAAAATAATGTTCGCGcc                         <  1:21399579/67‑1 (MQ=255)
                                             gcgcCTGCAAAGCAAGGGAATTAGCGCGGCGGCCTATCATGCCGGGCGGGAATATAATGTTCGCGCCg                        >  1:30846691/1‑68 (MQ=255)
                                             gcgcCTGCAAAGCAAGGGAATTAGCGCGGCGGCCTATCATCCCGGGCTGGAAAATAATGTTCGCGCCg                        >  1:32061333/1‑68 (MQ=255)
                                                ccTGCAAAGCAAGGGAATTAGCGCGGCGGCCTATCATGCCGGGCTGGAAAATAATGTTCGCGCCGAtg                     >  1:25686549/1‑68 (MQ=255)
                                                 cTGCAAAGCAAGGGAATTAGCGCGGCGGCCTATCATGCCGGGCTGGAAAATAATGTTCGCGCCGAtgt                    <  1:9627760/68‑1 (MQ=255)
                                                 cTGCAAAGCAAGGGAATTAGCGCGGCGGCCTATCATGCCGGGCTGGAAAATAATGTTCGCGCCGAtgt                    <  1:23928557/68‑1 (MQ=255)
                                                 cTGCAAAGCAAGGGAATTAGCGCGGCGGCCTATCATGCCGGGCTGGAAAATAATGTTCGCGCCGAtgt                    <  1:26830663/68‑1 (MQ=255)
                                                      aaGCAAGGGAATTAGCGCGGCGGCCTATCATGCCGGGCTTGAAAATAATGTTCGCGCCGATGTGCAgg               <  1:2594563/68‑1 (MQ=255)
                                                       aGCAAGGGAATTAGCGCGGCGGCCTATCATGCCGGGCTGGAAAATAATGTTCGCGCCGATGTGCAGGa              <  1:22742904/68‑1 (MQ=255)
                                                       aGCAAGGGAATTAGCGCGGCGGCCTATCATGCCGGGCTGGAAAATAATGTTCGCGCCGATGTGCAGGa              >  1:4173270/1‑68 (MQ=255)
                                                       aGCAAGGGAATTAGCGCGGCGGCCTATCATGCCGGGCTGGAAAATAATGTTCGCGCCGATGTGCAGGa              <  1:20407684/68‑1 (MQ=255)
                                                       aGCAAGGGAATTAGCGCGGCGGCCTATCATGCCGGGCTGGAAAATAATGTTCGCGCCGATGTGCAGGa              >  1:15354676/1‑68 (MQ=255)
                                                       aGCAAGGGAATTAGCGCGGCGGCCTATCATGCCGGGCTGGAAAATAATGTTCGCGCCGATGTGCAGGa              >  1:13533739/1‑68 (MQ=255)
                                                       aGCAAGGGAATTAGCGCGGCGGCCTATCATGCCGGGCTGGAAAATAATGTTCGCGCCGATGTGCAGGa              <  1:483589/68‑1 (MQ=255)
                                                       aGCAAGGCAAAAAGCGCGGCCTCCAATAAAGCCGGGAATGAAAATAATGTTATCGCCGATGTGCAGGa              >  1:29122122/1‑68 (MQ=255)
                                                          aaGGGAATTAGCGCGGCGGCCTATCATGCCGGGCTGGAAAATAATGTTCGCGCCGATGTGCAGGaa             <  1:5624540/66‑1 (MQ=255)
                                                             ggAATTAGCGCGGCGGCCTATCATGCCGGGCTGGAAAATAATGTTCGCGCCGATGTGCAGGAAAAAt         >  1:19869546/1‑67 (MQ=255)
                                                               aaTTAGCGCGGCGGCCTATCATGCCGGGCTGGAAAATAATGTTCGCGCCGATGTGCAGGAAAAATTcc      >  1:16749824/1‑68 (MQ=255)
                                                               aaTTAGCGCGGCGGCCTATCATGCCGGGCTGGAAAATAATGTTCGCGCCGATGTGCAGGAAAAATTcc      >  1:14190089/1‑68 (MQ=255)
                                                                 ttAGCGCGGCGGCCTATCATGCCGGGCTGGAAAATAATGTTCGCGCCGATGTGCAGGAAAAATTCCa     >  1:12911616/1‑67 (MQ=255)
                                                                 ttAGCGCGGCGGCCTATCATGCCGGGCTGGAAAATAATGTTCGCGCCGATGTGCAGGAAAAATTCCa     >  1:5076756/1‑67 (MQ=255)
                                                                   aGCGCGGCGGCCTATCATGCCGGGCTGGAAAATAATGTTCGCGCCGATGTGCAGGAAAAATTCCAgc   >  1:831653/1‑67 (MQ=255)
                                                                   |                                                                   
CATTATCTACTGCAACAGCCGCGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGAATTAGCGCGGCGGCCTATCATGCCGGGCTGGAAAATAATGTTCGCGCCGATGTGCAGGAAAAATTCCAGCG  >  CP009273/3999940‑4000074

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.