New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 4306574 =158 (0.410)13 (0.040) 10/98 NT 8.6% coding (462/1137 nt) phnM ribophosphonate triphosphate hydrolase
?CP009273 4306632 = 138 (0.410)coding (404/1137 nt) phnM ribophosphonate triphosphate hydrolase

Only 100 of 275 total aligned reads displayed.

CTCGCGGTTGGCGAACTGGCGCTGGCCCGGCGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCGGCAGTTCGCAGCGCAGATGCAGAC  >  CP009273/4306508‑4306641
                                                                  |                                                                   
ctcGCGGTTGGCGAACTGGCGCTGGCCCGGCGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTcgc                                                                    <  1:3308409/68‑1 (MQ=255)
ctcGCGGTTGGCGAACTGGCGCTGGCCCGGCGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTcgc                                                                    <  1:10988039/68‑1 (MQ=255)
ctcGCGGTTGGCGAACTGGCGCTGGCCCGGCGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTcgc                                                                    <  1:6543188/68‑1 (MQ=255)
ctcGCGGTTGGCGAACTGGCGCTGGCCCGGCGAGTGGTCCATCAGCGACACCAGCGGCACCGGCTcgc                                                                    <  1:18964546/68‑1 (MQ=255)
 tcGCGGTTGGCGAACTGGCGCTGGCCCGGCGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTcgcg                                                                   <  1:24106406/68‑1 (MQ=255)
 tcGCGGTTGGCGAACTGGCGCTGGCCCGGCGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTcgc                                                                    >  1:27323003/1‑67 (MQ=255)
 tcGCGGTTGGCGAACTGGCGCTGGCCCGGCGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTcgc                                                                    >  1:3059824/1‑67 (MQ=255)
 acgaagaagagcaactggcgctGGCCCGGCGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTcgc                                                                    >  1:30507022‑M2/23‑67 (MQ=255)
  tgatccacgccatcgaagagacgcagaaacgcggcgtcaaccgcgccgagcaccgtctgcatctgc                                                                    >  1:8311830‑M1/65‑66 (MQ=255)
  tgatcaacgccatcgaagagacgcagaaacgcggcgtcaaccgcgccgagcaccgtctgcatctgcgc                                                                  >  1:27883107‑M1/65‑68 (MQ=255)
  tgatcaacgccatcgaagagacgcagaaacgcggcgtcaaccgcgccgagcaccgtctgcatctgcgc                                                                  >  1:30235622‑M1/65‑68 (MQ=255)
  tgatcaacgccatcgaagagacgcagaaacgcggcgtcaaccgcgccgagcaccgtctgcatctgc                                                                    >  1:26981960‑M1/65‑66 (MQ=255)
   gcgGTTGGCGAACTGGCGCTGGCCCGGCGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTcgc                                                                    >  1:19243274/1‑65 (MQ=255)
    cgGTTGGCGAACTGGCGCTGGCCCGGCGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTCGCGCt                                                                 >  1:29459597/1‑67 (MQ=255)
    atcaacgccatcgaagagacgcagaaacgcggcgtcaaccgcgccgagcaccgtctgcatctGCGCt                                                                 <  1:17011149‑M1/5‑1 (MQ=255)
     tcaacgcgatcgaagagacgcagaaacgcggcgtcaaccgcgccgagcaccgtctgcatctGCGCTGc                                                               >  1:10521697‑M1/62‑68 (MQ=255)
     tcaacgccatcgaagagacgcagaaacgcggcgtcaaccgcgccgagcaccgtctgcatctgcgcatc                                                               >  1:5006833‑M1/62‑65 (MQ=255)
     tcaacgccatcgaagagacgcagaaacgcggcgtcaaccgcgccgagcaccgtctgcatctGCGCTg                                                                >  1:21425805‑M1/62‑67 (MQ=255)
     tcaacgccatcgaagagacgcagaaacgcggcgtcaaccgcgccgagcaccgtctgcatctGCGCTGc                                                               <  1:17629544‑M1/7‑1 (MQ=255)
     ggTTGGCGAACTGGCGCTGGCGCGGCGAGTGGTCCATCAGCGACCCCAGCGTCACCGGCTCGCGCTGc                                                               >  1:23025589/1‑68 (MQ=39)
     ggTTGGCGAACTGGCGCTGGCCCGGCGAGTGGTCCATCAGCGACACCTGCGTCACCGGCTCGCGCTGc                                                               <  1:29597480/68‑1 (MQ=255)
     ggTTGGCGAACTGGCGCTGGCCCGGCGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTCGCGCTGc                                                               <  1:28100603/68‑1 (MQ=255)
     ggTTGGCGAACTGGCGCTGGCCCGGCGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTCGCGCTGc                                                               <  1:31511206/68‑1 (MQ=255)
     ggTTGGCGAACTGGCGCTGGCCCGGCGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTCGCGCTGc                                                               <  1:21687635/68‑1 (MQ=255)
     ggTTGGCGAACTGGCGCTGGCCCGGCGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTCGCGCTGc                                                               <  1:14107522/68‑1 (MQ=255)
     ggTTGGCGAACTGGCGCTGGCCCGGCGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTCGCGCTGc                                                               <  1:11761563/68‑1 (MQ=255)
           gcaactggcgctGGCCCGGCGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGt                                                         >  1:18594042‑M2/13‑68 (MQ=255)
           cGAACTGGCGCTGGCCCGGCGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGt                                                         >  1:3249182/1‑68 (MQ=255)
            gAACTGGCGCTGGCCCGGCGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGt                                                         <  1:17560035/67‑1 (MQ=255)
            gAACTGGCGCTGGCCCGGCGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGt                                                         <  1:20890381/67‑1 (MQ=255)
             aactggcgctGGCCCGGCGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGttt                                                       >  1:21784720‑M2/11‑68 (MQ=255)
             aactggcgctGGCCCGGCGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGttt                                                       >  1:22445760‑M2/11‑68 (MQ=255)
              actggcgctGGCCCGGCGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGttt                                                       <  1:26218835‑M2/58‑1 (MQ=255)
               ctggcgctGGCCCGGCGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGttttt                                                     <  1:12866026‑M2/60‑1 (MQ=255)
                    gctGGCCCGGCGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAAc                                                >  1:29909215‑M2/4‑68 (MQ=255)
                      tGGCCCGGCGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACa                                               >  1:22176760‑M2/2‑67 (MQ=255)
                       ggCCCGGCGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGc                                             <  1:20193157/68‑1 (MQ=255)
                        gCCCGGCGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCg                                            >  1:29189104/1‑68 (MQ=255)
                         cccGGCGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCg                                            >  1:8701239/1‑67 (MQ=255)
                         cccGGCGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCg                                            >  1:14693009/1‑67 (MQ=255)
                              cGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCg                                      >  1:59699/1‑68 (MQ=255)
                              cGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCg                                      >  1:11379922/1‑68 (MQ=255)
                               gAGTGGTCCATCAGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCgt                                     <  1:28247845/68‑1 (MQ=255)
                                  ggcgtcaaccgcgccgagcaccgtctgcatctGCGCTGCACCAGTTTTTCAAACAGCGGCAGCgtggt                                  >  1:16430607‑M1/33‑68 (MQ=255)
                                   ggTCCATCAGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCgtggtg                                 >  1:20000589/1‑68 (MQ=255)
                                   ggTCCATCAGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCgtggtg                                 >  1:5519878/1‑68 (MQ=255)
                                   ggTCCATCAGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCgtggtg                                 >  1:14228887/1‑68 (MQ=255)
                                   ggTCCATCAGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCggggtg                                 >  1:2602300/1‑68 (MQ=255)
                                    gTCCATCAGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGgtgt                                >  1:6921314/1‑68 (MQ=255)
                                    gTCCATCAGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGgtgt                                >  1:8941718/1‑68 (MQ=255)
                                        aTCAGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGAt                             >  1:13211138/1‑67 (MQ=255)
                                         tCAGCGACACCAGCGTCCCCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGc                           >  1:9331818/1‑68 (MQ=255)
                                          cAGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCg                          >  1:28010520/1‑68 (MQ=255)
                                           aGCGACACCCGCGTCACCGGCTCGCGCTGCACCCGGTGTTCAAACAGCGGCCGCGTGGTGTGATGCg                          >  1:15244267/1‑67 (MQ=255)
                                           aGCGACACCAGCGTCACCGGCTCGCGCTGCCCCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCg                          >  1:11549945/1‑67 (MQ=255)
                                           aGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCg                          >  1:28646524/1‑67 (MQ=255)
                                           aGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCg                          >  1:30948040/1‑67 (MQ=255)
                                           aGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCg                          >  1:20363901/1‑67 (MQ=255)
                                           aGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCg                          >  1:4153386/1‑67 (MQ=255)
                                           aGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCg                          >  1:25316080/1‑67 (MQ=255)
                                           aGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCg                          >  1:24393514/1‑67 (MQ=255)
                                           aGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCg                          >  1:22817146/1‑67 (MQ=255)
                                           aGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCg                          >  1:5867597/1‑67 (MQ=255)
                                           aGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCg                          >  1:8076997/1‑67 (MQ=255)
                                           aGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCg                          >  1:8380099/1‑67 (MQ=255)
                                           aGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCg                          >  1:15454070/1‑67 (MQ=255)
                                           aGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCg                          >  1:1417153/1‑67 (MQ=255)
                                           aGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCg                          >  1:8929561/1‑67 (MQ=255)
                                           aGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCg                          >  1:12694881/1‑67 (MQ=255)
                                           aGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCg                          >  1:1200137/1‑67 (MQ=255)
                                           aGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCg                          >  1:10030534/1‑67 (MQ=255)
                                           aGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCg                          >  1:10166946/1‑67 (MQ=255)
                                           aGCGACACCAGCGTCACCCGCTCGCGCTGCACCAGTATTACAACCAGCCCCAGCGGGGTGTGATGCg                          >  1:9717811/1‑67 (MQ=255)
                                            gcgccgagcaccgtctgcatctGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCGGc                        >  1:5646164‑M1/23‑68 (MQ=255)
                                             cGACAACAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCGGCa                       >  1:2904103/1‑68 (MQ=255)
                                               acacCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCGGCAGt                     >  1:11719455/1‑68 (MQ=255)
                                               acacCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCGGCAGt                     >  1:28925382/1‑68 (MQ=255)
                                                cacCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCGGCAGt                     <  1:22624181/67‑1 (MQ=255)
                                                 acCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCGGCAGTTc                   >  1:25695226/1‑68 (MQ=255)
                                                  ccAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCGGCAGTTc                   >  1:12323287/1‑67 (MQ=255)
                                                  ccAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCGGCAGTTc                   >  1:27585114/1‑67 (MQ=255)
                                                  ccAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCGGCAGTTc                   >  1:798352/1‑67 (MQ=255)
                                                      ccgtctgcatctGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCGGCAGTTcgcagc              >  1:21374022‑M1/13‑68 (MQ=255)
                                                      cGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCGGCAGTTcgcagc              >  1:25530745/1‑68 (MQ=255)
                                                      cGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCGGCAGTTcgcagc              >  1:13934237/1‑68 (MQ=255)
                                                      cGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCGGCAGTTcgcagc              >  1:17288956/1‑68 (MQ=255)
                                                       gTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCGGCAGTTcgcagc              >  1:5778381/1‑67 (MQ=255)
                                                         cACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCGGCAGTTcgcagcgca           <  1:24462422/68‑1 (MQ=255)
                                                         cACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCGGCAGTTcgcagcgca           >  1:19479579/1‑68 (MQ=255)
                                                          aCCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCGGCAGTTcgcagcgcag          >  1:13049801/1‑68 (MQ=255)
                                                           ccGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCGGCAGTTCGCAGCGCAGa         <  1:18158164/68‑1 (MQ=255)
                                                             ggCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCGGCAGTTCGCAGCGCAGAt        >  1:7403498/1‑67 (MQ=255)
                                                             ggCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCGGCAGTTCGCAGCGCAGAt        >  1:4815140/1‑67 (MQ=255)
                                                              gCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCGGCAGTTCGCAGCGCAGATGc      >  1:17996358/1‑68 (MQ=255)
                                                               tctGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCGGCAGTTCGCAGCGCAGATGCa     <  1:23510770‑M1/65‑1 (MQ=255)
                                                               tctGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCGGCAGTTCGCAGCGCAGATGCa     <  1:9092496‑M1/65‑1 (MQ=255)
                                                               tctGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCGGCAGTTCGCAGCGCAGATGCa     <  1:1185711‑M1/65‑1 (MQ=255)
                                                               cTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCGGCAGTTCGCAGCGCAGATGCa     >  1:29709877/1‑68 (MQ=255)
                                                                tCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCGGCAGTTCGCAGCGCAGATGCAg    >  1:16670427/1‑68 (MQ=255)
                                                                  GCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCGGCAGTTCGCAGCGCAGATGCAGAc  <  1:4426462‑M1/68‑1 (MQ=255)
                                                                  |                                                                   
CTCGCGGTTGGCGAACTGGCGCTGGCCCGGCGAGTGGTCCATCAGCGACACCAGCGTCACCGGCTCGCGCTGCACCAGTTTTTCAAACAGCGGCAGCGTGGTGTGATGCGGCAGTTCGCAGCGCAGATGCAGAC  >  CP009273/4306508‑4306641

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.