| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 4523631 | 636 (1.650) | 3 (0.010) | 3/96 | NT | 0.56% | coding (240/258 nt) | yjhX | UPF0386 family protein |
| ? | CP009273 | = 4523644 | 522 (1.580) | coding (227/258 nt) | yjhX | UPF0386 family protein | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 861 total aligned reads displayed.
TATCTGTGATATGAAAAGTGAAGTGGTGTACTGTCATAGAAACTCTCCTTAGCGATTATCGAGCTGAGCGCGAACTTTATTCAGCTCGGTGGTGTTGATTCGATAGGGCTGGCCATTGACGGACTTGATAAGT > CP009273/4523565‑4523697 | aTCTGTGATATGAAAAGTGAAGTGGTGTACTGTCATAGAAACTCTCCTTAGCGATTATCGAGCTGAgc > 1:21879840/1‑68 (MQ=255) tCTGTGATATGAAAAGTGAAGTGGTGTACTGTCATAGAAACTCTCCTTAGCGATTATCGAGCTGAgc > 1:9739374/1‑67 (MQ=255) cTGTGATATGAAAAGTGAAGTGGTGTACTGTCATAGAAACTCTCCTTAGCGATTATCGAGCTGAgcgc > 1:19397583/1‑68 (MQ=255) cTGTGATATGAAAAGTGAAGTGGTGTACTGTCATAGAAACTCTCCTTAGCGATTATCGAGCTGAgcgc > 1:4812298/1‑68 (MQ=255) cTGTGATATGAAAAGTGAAGTGGTGTACTGTCATAGAAACTCTCCTTAGCGATTATCGAGCTGAgcgc > 1:7632111/1‑68 (MQ=255) cTGTGATATGAAAAGTGAAGTGGTGTACTGTCATAGAAACTCTCCTTAGCGATTATCGAGCTGAgcgc > 1:5809360/1‑68 (MQ=255) tatatGAAAAGTGAAGTGGTGTACTGTCATAGAAACTCTCCTTAGCGATTATCGAGCTGAGCGCGAAc < 1:13055539/67‑1 (MQ=255) gATATGAAAAGTGAAGTGGTGTACTGTCATAGAAACTCTCCTTAGCGATTATCGAGCTGAGCGCGAAc < 1:3364767/68‑1 (MQ=255) gATATGAAAAGTGAAGTGGTGTACTGTCATAGAAACTCTCCTTAGCGATTATCGAGCTGAGCGCGAAc < 1:2864024/68‑1 (MQ=255) gATATGAAAAGTGAAGTGGTGTACTGTCATAGAAACTCTCCTTAGCGATTATCGAGCTGAGCGCGAAc < 1:22812366/68‑1 (MQ=255) gATATGAAAAGTGAAGTGGTGTACTGTCATAGAAACTCTCCTTAGCGATTATCGAGCTGAGCGCGAAc < 1:18075451/68‑1 (MQ=255) atGAAAAGTGAAGTGGTGTACTGTCATAGAAACTCTCCTTAGCGATTATCGAGCTGAGCGCGAACttt < 1:26063459/68‑1 (MQ=255) tGAAAAGTGAAGTGGTGTACTGTCATAGAAACTCTCCTTAGCGATTATCGAGCTGAGCGCGAACTTTa < 1:12724051/68‑1 (MQ=255) gAAAAGTGAAGTGGTGTACTGTCATAGAAACTCTCCTTAGCGATTATCGAGCTGAGCGCGAACTTTAt > 1:30889687/1‑68 (MQ=255) gAAAAGTGAAGTGGTGTACTGTCATAGAAACTCTCCTTAGCGATTATCGAGCTGAGCGCGAACTTTAt < 1:31925279/68‑1 (MQ=255) aagtgaagtgGTGTACTGTCATAGAAACTCTCCTTAGCGATTATCGAGCTGAGCGCGAACTTTATtca > 1:5443859‑M2/1‑65 (MQ=255) agtgaagtgGTGTACTGTCATAGAAACTCTCCTTAGCGATTATCGAGCTGAGCGCGAACTTTATtca < 1:15538161‑M2/67‑4 (MQ=255) taagtggTGTACTGTCATAGACACTCTCCTTAGCGATTATCGAGCTGAGCGCGAACTTTATtcagc > 1:25749310‑M2/2‑61 (MQ=255) gaagtgGTGTACTGTCATAGAAACTCTCCTTAGCGATTATCGAGCTGAGCGCGAACTTTATtcagctc < 1:16451397‑M2/68‑8 (MQ=255) gaagtgGTGTACTGTCATAGAAACTCTCCTTAGCGATTATCGAGCTGAGCGCGAACTTTATtcagc > 1:24379743‑M2/1‑61 (MQ=255) agtgGTGTACTGTCATAGAAACTCTCCTTAGCGATTATCGAGCTGAGCGCGAACTTTATtcagctcg > 1:19808106‑M2/1‑59 (MQ=255) agtgGTGTACTGTCATAGAAACTCTCCTTAGCGATTATCGAGCTGAGCGCGAACTTTATtcagctcg > 1:27545017‑M2/1‑59 (MQ=255) agtgGTGTACTGTCATAGAAACTCTCCTTAGCGATTATCGAGCTGAGCGCGAACTTTATTCAGCTCgg > 1:26824504/1‑68 (MQ=255) agtgGTGTACTGTCATAGAAACTCTCCTTAGCGATTATCGAGCTGAGCGCGAACTTTATTCAGCTCgg > 1:16919847/1‑68 (MQ=255) agtgGTGTACTGTCATAGAAACTCTCCTTAGCGATTATCGAGCTGAGCGCGAACTTTATTCAGCTCgg > 1:26244286/1‑68 (MQ=255) gtggtgTACTGTCATAGAAACTCTCCTTAGCGATTATCGAGCTGAGCGCGAACTTTATTCAGCTCggt > 1:21150365/1‑68 (MQ=255) ggtgTACTGTCATAGAAACTCTCCTTAGCGATTATCGAGCTGAGCGCGAACTTTATTCAGCTCggtgg > 1:15413758/1‑68 (MQ=255) ggtgTACTGTCATAGAAACTCTCCTTAGCGATTATCGAGCTGAGCGCGAACTTTATTCAGCTCggtgg > 1:14055768/1‑68 (MQ=255) ggtgTACTGTCATAGAAACTCTCCTTAGCGATTATCGAGCTGAGCGCGAACTTTATTCAGCTCggtgg < 1:6975501/68‑1 (MQ=255) ggtgTACTGTCATAGAAACTCTCCTTAGCGATTATCGAGCTGAGCGCGAACTTTATTCAGCTCggt < 1:13331427/66‑1 (MQ=255) ggtgTACTGTCATAGAAACTCTCCTTAGCGATTATCGAGCTGAGCGCGAACTTTATTCAGCTCggt < 1:24754186/66‑1 (MQ=255) ggtgTACTGTCATAGAAACTCTCCTTAGCGATTATCGAGCTGAGCGCGAACTTTATTCAGCTCggt < 1:29830615/66‑1 (MQ=255) tgtACTGTCATAGAAACTCTCCTTAGCGATTATCGAGCTGAGCGCGAACTTTATTCAGCTCggtggt < 1:2007049/67‑1 (MQ=255) tgtACTGTCATAGAAACTCTCCTTAGCGATTATCGAGCTGAGCGCGAACTTTATTCAGCTCGgtggtg > 1:10843942/1‑68 (MQ=255) agtACTGTCATAGAAACTCTCCTTAGCGATTATCGAGCTGAGCGCGAACTTTATTCAGCTCggtggt < 1:29103677/66‑1 (MQ=255) aCTGTCATAGAAACTCTCCTTAGCGATTATCGAGCTGAGCGCGAACTTTATTCAGCTCGGTGGTGTTg < 1:28245677/68‑1 (MQ=255) aCTGTCATAGAAACTCTCCTTAGCGATTATCGAGCTGAGCGCGAACTTTATTCAGCTCGGTGGTGTTg > 1:10310359/1‑68 (MQ=255) aCTGTCATAGAAACTCTCCTTAGCGATTATCGAGCTGAGCGCGAACTTTATTCAGCTCGGTGGTGTTg > 1:25316395/1‑68 (MQ=255) aCTGTCATAGAAACTCTCCTTAGCGATTATCGAGCTGAGCGCGAACTTTATTCAGCTCGGTGGTGTTg > 1:30400975/1‑68 (MQ=255) aCTGTCATAGAAACTCTCCTTAGCGATTATCGAGCTGAGCGCGAACTTTATTCAGCTCGGTGGTGTTg > 1:7849441/1‑68 (MQ=255) aCTGTCATAGAAACTCTCCTTAGCGATTATCGAGCTGAGCGCGAACTTTATTCAGCTCGGTGGTGTTg > 1:25092299/1‑68 (MQ=255) aCTGTCATAGAAACTCTCCTTAGCGATTATCGAGCTGAGCGCGAACTTTATTCAGCTCGGTGGTGTTg > 1:3817228/1‑68 (MQ=255) aCTGTCATAGAAACTCTCCTTAGCGATTATCGAGCTGAGCGCGAACTTTATTCAGCTCGGTGGTGTTg > 1:8153493/1‑68 (MQ=255) aCTGTCATAGAAACTCTCCTTAGCGATTATCGAGCTGAGCGCGAACTTTATTCAGCTCGGTGGTGTTg < 1:29556165/68‑1 (MQ=255) tGTCATAGAAACTCTCCTTAGCGATTATCGAGCTGAGCGCGAACTTTATTCAGCTCGGTGGTGTTGAt > 1:16184179/1‑68 (MQ=255) tGTCATAGAAACTCTCCTTAGCGATTATCGAGCTGAGCGCGAACTTTATTCAGCTCGGTGGTGTTGAt > 1:14936950/1‑68 (MQ=255) tGTCATAGAAACTCTCCTTAGCGATTATCGAGCTGAGCGCGAACTTTATTCAGCTCGGTGGTGTTGAt > 1:2028294/1‑68 (MQ=255) gTCATAGAAACTCTCCTTAGCGATTATCGAGCTGAGCGCGAACTTTATTCAGCTCGGTGGTGTTGAt > 1:14649540/1‑67 (MQ=255) gTCATAGAAACTCTCCTTAGCGATTATCGAGCTGAGCGCGAACTTTATTCAGCTCGGTGGTGTTGAt > 1:17910979/1‑67 (MQ=255) gTCATAGAAACTCTCCTTAGCGATTATCGAGCTGAGCGCGAACTTTATTCAGCTCGGTGGTGTTGAt > 1:31100352/1‑67 (MQ=255) gTCATAGAAACTCTCCTTAGCGATTATCGAGCTGAGCGCGAACTTTATTCAGCTAGGTGGTGTTGAt > 1:4066303/1‑67 (MQ=255) cATAGAATCTCTCCTTAGCGATTATCGAGCTGAGCGCGAACTTTATTCAGCTCGGTGGTGTTGATTCg < 1:8953024/68‑1 (MQ=255) cATAGAAACTCTCCTTAGCGATTATCGAGCTGAGCGCGAACTTTATTCAGCTCGGTGGTGTTGATTCg < 1:2427647/68‑1 (MQ=255) cATAGAAACTCTCCTTAGCGATTATCGAGCTGAGCGCGAACTTTATTCAGCTCGGTGGTGTTGATTCg > 1:23405016/1‑68 (MQ=255) cATAGAAACTCTCCTTAGCGATTATCGAGCTGAGCGCGAACTTTATTCAGCTCGGTGGTGTTGATTCg < 1:6085813/68‑1 (MQ=255) cATAGAAACTCTCCTTAGCGATTATCGAGCTGAGCGCGAACTTTATTCAGCTCGGTGGTGTTGATTCg < 1:11136801/68‑1 (MQ=255) aGAAACTCTCCTTAGCGATTATCGAGCTGAGCGCGAACTTTATTCAGCTCGGTGGTGTTGATTCGATa > 1:27033996/1‑68 (MQ=255) aatctctCCTTAGCGATTATCGAGCTGAGCGCGAACTTTATTCAGCTCGGTGGTGTTGATTCGATAgg > 1:20779794/4‑68 (MQ=255) aaaCTCTCCTTAGCGATTATCGAGCTGAGCGCGAACTTTTTTCAGCTCGGTGGTGTTGATTCGATAgg > 1:4559710/1‑68 (MQ=255) aaaCTCTCCTTAGCGATTATCGAGCTGAGCGCGAACTTTATTCAGCTCGGTGGTGTTGATTCGATAgg > 1:30060769/1‑68 (MQ=255) aaaCTCTCCTTAGCGATTATCGAGCTGAGCGCGAACTTTATTCAGCTCGGTGGTGTTGATTCGATAgg > 1:10126037/1‑68 (MQ=255) aaaCTCTCCTTAGCGATTATCGAGCTGAGCGCGAACTTTATTCAGCTCGGTGGTGTTGATTCGATAgg > 1:637344/1‑68 (MQ=255) aaaCTCTCCTTAGCGATTATCGAGCTGAGCGCGAACTTTATTCAGCTCGGTGGTGTTGATTCGATAgg > 1:100283/1‑68 (MQ=255) aaaCTCTCCTTAGCGATTATCGAGCTGAGCGCGAACTTTATTCAGCTCGGTGGTGTTGATTCGATAgg > 1:23879695/1‑68 (MQ=255) aaaCTCTCCTTAGCGATTATCGAGCTGAGCGCGAACTTTATTCAGCTCGGTGGTGTTGATTCGATAgg > 1:11480977/1‑68 (MQ=255) aaaCTCTCCTTAGCGATTATCGAGCTGAGCGCGAACTTTATTCAGCTCGGTGGTGTTGATTCGATAgg > 1:11997017/1‑68 (MQ=255) aaaCTCTCCTTAGCGATTATCGAGCTGAGCGCGAACTTTATTCAGCTCGGTGGTGTTGATTCGATAgg > 1:17193707/1‑68 (MQ=255) aaaCTCTCCTTAGCGATTATCGAGCTGAGCGCGAACTTTATTCAGCTCGGTGGTGTTGATTCGATAgg > 1:12300515/1‑68 (MQ=255) aaaCTCTCCTTAGCGATTATCGAGCTGAGCGCGAACTTTATTCAGCTCGGTGGTGTTGATTCGATAgg > 1:13604661/1‑68 (MQ=255) aaaCTCTCCTTAGCGATTATCGAGCTGAGCGCGAACTTTATTCAGCTCGGTGGTGTTGATTCGATAgg > 1:18676290/1‑68 (MQ=255) aaaCTCTCCTTAGCGATTATCGACCTGAGCGCGAACTTTATTCAGCACGGTGGTGTTGATTCGATAgg > 1:5171109/1‑68 (MQ=255) aaCTCTCCTTAGCGATTATCGAGCTGAGCGCGAACTTTATTCAGCTCGGTGGTGTTGATTCGATAg < 1:8553024/66‑1 (MQ=255) aCTCTCCTTAGCGATTATCGAGCTGAGCGCGAACTTTATTCAGCTCGGTGGTGTTGATTCGATAgg > 1:9261144/1‑66 (MQ=255) aCTCTCCTTAGCGATTATCGAGCTGAGCGCGAACTTTATTCAGCTCGGTGGTGTTGATTCGATAgg > 1:24528810/1‑66 (MQ=255) aCTCTCCTTAGCGATTATCGAGCTGAGCGCGAACTTTATTCAGCTCGGTGGTGTTGATTCGATAgg > 1:3586703/1‑66 (MQ=255) aCTCTCCTTAGCGATTATCGAGCTGAGCGCGAACTTTATTCAGCTCGGTGGTGTTGATTCGATAgg > 1:18449689/1‑66 (MQ=255) tctcCTTAGCGATTATCGAGCTGAGCGCGAACTTTATTCAGCTCGGTGGTGTTGATTCGATAGGGCTg > 1:15860475/1‑68 (MQ=255) tctcCTTAGCGATTATCGAGCTGAGCGCGAACTTTATTCAGCTCGGTGGTGTTGATTCGATAGGGCTg > 1:26593906/1‑68 (MQ=255) tcCTTAGCGATTATCGAGCTGAGCGCGAACTTTATTCAGCTCGGTGGTGTTGATTCGATAGGGCTGGc < 1:30754746/68‑1 (MQ=255) ccTTAGCGATTATCGAGCTGAGCGCGAACTTTATTCAGCTCGGTGGTGTTGATTCGATAGGGCTGGcc > 1:13850810/1‑68 (MQ=255) aGCGATTATCGAGCTGAGCGCGAACTTTATTCAGCTCGGTGGTGTTGATTCGATAGGGCTGGCCATTg < 1:19538543/68‑1 (MQ=255) gCGATTATCGAGCTGAGCGCGAACTTTATTCAGCTCGGTGGTGTTGATTCGATAGGGCTGGCCATTg > 1:7260134/1‑67 (MQ=255) gCGATTATCGAGCTGAGCGCGAACTTTATTCAGCTCGGTGGTGTTGATTCGATAGGGCTGGCCATTg > 1:27824319/1‑67 (MQ=255) gATTATCGAGCTGAGCGCGAACTTTATTCAGCTCGGTGGTGTTGATTCGATAGGGCTGGCCATTGACg > 1:14227306/1‑68 (MQ=255) gATTATCGAGCTGAGCGCGAACTTTATTCAGCTCGGTGGTGTTGATTCGATAGGGCTGGCCATTGACg > 1:3168162/1‑68 (MQ=255) gATTATCGAGCTGAGCGCGAACTTTATTCAGCTCGGTGGTGTTGATTCGATAGGGATGGCCATTGACg > 1:17593737/1‑68 (MQ=255) aTCGAGCTGAGCGCGAACTTTATTCAGCTCGGTGGTGTTGATTCGATAGGGCTGGCCATTGACGGACt > 1:6551425/1‑68 (MQ=255) gAGCTGAataaagttcgcgctcagctcgataatcgctaaggagagtttctatgacagtacaccacttc < 1:15114622‑M1/68‑62 (MQ=255) gAGCTGAataaagttcgcgctcagctcgataatcgctaaggagagtttctatgacagtacaccacttc < 1:9441738‑M1/68‑62 (MQ=255) gCTGAataaagttcgcgctcagctcgataatcgctaaggagagtttctatgacagtacaccacttc > 1:27284409‑M1/1‑5 (MQ=255) gCTGAataaagttcgcgctcagctcgataatcgctaaggagagtttctatgacagtacaccacttc > 1:1178955‑M1/1‑5 (MQ=255) gCTGAGCGCGAACTTTATTCAGCTCGGTGGTGTTGATTCGATAGGGCTGGCCATTGACGGACTTGATa > 1:18958599/1‑68 (MQ=255) gCTGAGCGCGAACTTTATTCAGCTCGGTGGTGTTGATTCGATAGGGCTGGCCATTGACGGACTTGATa > 1:9622402/1‑68 (MQ=255) gCTGAGCGCGAACTTTATTCAGCTCGGTGGTGTTGATTCGATAGGGCTGGCCATTGACGGACTTGATa > 1:16742044/1‑68 (MQ=255) gCTGAGCGCGAACTTTATTCAGCTCGGTGGTGTTGATTAGATAGGGCTGGCCATTGACGGACTTGATa > 1:1062692/1‑68 (MQ=255) tGAataaagttcgcgctcagctcgataatcgctaaggagagtttctatgacagtacaccacttcact < 1:21740411‑M1/67‑65 (MQ=255) tGAGCGCGAACTTTATTCAGCTCGGTGGTGTTGATTCGATAGGGCTGGCCATTGACGGACTTGATAAg > 1:22347589/1‑68 (MQ=255) tGAGCGCGAACTTTATTCAGCTCGGTGGTGTTGATTCGATAGGGCTGGCCATTGACGGACTTGATAAg > 1:2546846/1‑68 (MQ=255) tGAGCGCGAACTTTATTCAGCTCGGTGGTGTTGATTCGATAGGGCTGGCCATTGACGGACTTGATAAg > 1:3146656/1‑68 (MQ=255) gAataaagttcgcgctcagctcgataatcgctaaggagagtttctatgacagtacaccacttcacttt < 1:23158422‑M1/68‑67 (MQ=255) | TATCTGTGATATGAAAAGTGAAGTGGTGTACTGTCATAGAAACTCTCCTTAGCGATTATCGAGCTGAGCGCGAACTTTATTCAGCTCGGTGGTGTTGATTCGATAGGGCTGGCCATTGACGGACTTGATAAGT > CP009273/4523565‑4523697 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |