| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 4523631 | 636 (1.650) | 3 (0.010) | 3/96 | NT | 0.56% | coding (240/258 nt) | yjhX | UPF0386 family protein |
| ? | CP009273 | = 4523644 | 522 (1.580) | coding (227/258 nt) | yjhX | UPF0386 family protein | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 700 total aligned reads displayed.
GAAAAGTGAAGTGGTGTACTGTCATAGAAACTCTCCTTAGCGATTATCGAGCTGAGCGCGAACTTTATTCAGCTCGGTGGTGTTGATTCGATAGGGCTGGCCATTGACGGACTTGATAAGTTTTTTGGTTTTGAG > CP009273/4523577‑4523711 | gAAAAGTGAAGTGGTGTACTGTCATAGAAACTCTCCTTAGCGATTATCGAGCTGAGCGCGAACTTTAt > 1:890552/1‑68 (MQ=255)gAAAAGTGAAGTGGTGTACTGTCATAGAAACTCTCCTTAGCGATTATCGAGCTGAGCGCGAACTTTAt > 1:30350575/1‑68 (MQ=255)gAAAAGTGAAGTGGTGTACTGTCATAGAAACTCTCCTTAGCGATTATCGAGCTGAGCGCGAACTTTAt > 1:10824106/1‑68 (MQ=255)gAAAAGTGAAGTGGTGTACTGTCATAGAAACTCTCCTTAGCGATTATCGAGCTGAGCGCGAACTTTAt > 1:30633246/1‑68 (MQ=255)gAAAAGTGAAGTGGTGTACTGTCATAGAAACTCTCCTTAGCGATTATCGAGCTGAGCGCGAACTTTAt > 1:6465578/1‑68 (MQ=255)gAAAAGTGAAGTGGTGTACTGTCATAGAAACTCTCCTTAGCGATTATCGAGCTGAGCGCGAACTTTAt > 1:27203584/1‑68 (MQ=255)gAAAAGTGAAGTGGTGTACTGTCATAGAAACTCTCCTTAGCGATTATCGAGCTGAGCGCGAACTTTAt > 1:474489/1‑68 (MQ=255) aaaGTGAAGTGGTGTACTGTCATAGAAACTCTCCTTAGCGATTATCGAGCTGAGCGCGAACTTTATtc < 1:25617311‑M2/68‑3 (MQ=255) aaaGTGAAGTGGTGTACTGTCATAGAAACTCTCCTTAGCGATTATCGAGCTGAGCGCGAACTTTATtc < 1:17742838‑M2/68‑3 (MQ=255) aagtgaagtgGTGTACTGTCATAGAAACTCTCCTTAGCGATTATCGAGCTGAGCGCGAACTTTATtca > 1:5443859‑M2/1‑65 (MQ=255) agtgaagtgGTGTACTGTCATAGAAACTCTCCTTAGCGATTATCGAGCTGAGCGCGAACTTTATtcag > 1:26176202‑M2/1‑64 (MQ=255) agtgaagtgGTGTACTGTCATAGAAACTCTCCTTAGCGATTATCGAGCTGAGCGCGAACTTTATtca < 1:15538161‑M2/67‑4 (MQ=255) agtgaagtgGTGTACTGTCATAGAAACTCTCCTTAGCGATTATCGAGCTGAGCGCGAACTTTATtca < 1:27721216‑M2/67‑4 (MQ=255) gtgaagtgGTGTACTGTCATAGAAACTCTCCTTAGCGATTATCGAGCTGAGCGCGAACTTTATtca < 1:19454522‑M2/66‑4 (MQ=255) gaagtgGTGTACTGTCATAGAAACTCTCCTTAGCGATTATCGAGCTGAGCGCGAACTTTATtcagctc < 1:5822033‑M2/68‑8 (MQ=255) gaagtgGTGTACTGTCATAGAAACTCTCCTTAGCGATTATCGAGCTGAGCGCGAACTTTATtcagctc < 1:2451886‑M2/68‑8 (MQ=255) agtgGTGTACTGTCATAGAAACTCTCCTTAGCGATTATCGAGCTGAGCGCGAACTTTATtcagctcg > 1:1348312‑M2/1‑59 (MQ=255) agtgGTGTACTGTCATAGAAACTCTCCTTAGCGATTATCGAGCTGAGCGCGAACTTTATtcagctcg > 1:18013918‑M2/1‑59 (MQ=255) agtgGTGTACTGTCATAGAAACTCTCCTTAGCGATTATCGAGCTGAGCGCGAACTTTATTCAGCTCgg > 1:23842820/1‑68 (MQ=255) gtggtgTACTGTCATAGAAACTCTCCTTAGCGATTATCGAGCTGAGCGCGAACTTTATTCAGCTCggt > 1:12082189/1‑68 (MQ=255) ggtgTACTGTCATAGAAACTCTCCTTAGCGATTATCGAGCTGAGCGCGAACTTTATTCAGCTCggtgg > 1:14055768/1‑68 (MQ=255) ggtgTACTGTCATAGAAACTCTCCTTAGCGATTATCGAGCTGAGCGCGAACTTTATTCAGCTCggtgg > 1:15413758/1‑68 (MQ=255) ggtgTACTGTCATAGAAACTCTCCTTAGCGATTATCGAGCTGAGCGCGAACTTTATTCAGCTCggtgg > 1:18380006/1‑68 (MQ=255) ggtgTACTGTCATAGAAACTCTCCTTAGCGATTATCGAGCTGAGCGCGAACTTTATTCAGCTCggtgg > 1:19232568/1‑68 (MQ=255) ggtgTACTGTCATAGAAACTCTCCTTAGCGATTATCGAGCTGAGCGCGAACTTTATTCAGCTCggt < 1:7617564/66‑1 (MQ=255) ggtgTACTGTCATAGAAACTCTCCTTAGCGATTATCGAGCTGAGCGCGAACTTTATTCAGCTCggt < 1:23368649/66‑1 (MQ=255) ggggtACTGTCATAGAAACTCTCCTTAGCGATTATCGAGCTGAGCGCGAACTTTATTCAGCTCggt < 1:9742976/63‑1 (MQ=255) tgtACTGTCATAGAAACTCTCCTTAGCGATTATCGAGCTGAGCGCGAACTTTATTCAGCTCggtggt < 1:18604213/67‑1 (MQ=255) tgtACTGTCATAGAAACTCTCCTTAGCGATTATCGAGCTGAGCGCGAACTTTATTCAGCTCggtggt < 1:3617549/67‑1 (MQ=255) aCTGTCATAGAAACTCTCCTTAGCGATTATCGAGCTGAGCGCGAACTTTATTCAGCTCGGTGGTGTTg > 1:24938477/1‑68 (MQ=255) aCTGTCATAGAAACTCTCCTTAGCGATTATCGAGCTGAGCGCGAACTTTATTCAGCTCGGTGGTGTTg < 1:16037625/68‑1 (MQ=255) aCTGTCATAGAAACTCTCCTTAGCGATTATCGAGCTGAGCGCGAACTTTATTCAGCTCGGTGGTGTTg > 1:28683642/1‑68 (MQ=255) aCTGTCATAGAAACTCTCCTTAGCGATTATCGAGCTGAGCGCGAACTTTATTCAGCTCGGTGGTGTTg > 1:3523443/1‑68 (MQ=255) aCTGTCATAGAAACTCTCCTTAGCGATTATCGAGCTGAGCGCGAACTTTATTCAGCTCGGTGGTGTTg > 1:3822346/1‑68 (MQ=255) aCTGTCATAGAAACTCTCCTTAGCGATTATCGAGCTGAGCGCGAACTTTATTCAGCTCGGTGGTGTTg > 1:8153493/1‑68 (MQ=255) aCTGTCATAGAAACTCTCCTTAGCGATTATCGAGCTGAGCGCGAACTTTATTCAGCTCGGTGGTGTTg > 1:21826227/1‑68 (MQ=255) aCTGTCATAGAAACTCTCCTTAGCGATTATCGAGCTGAGCGCGAACTTTATTCAGCTCGGTGGTGTTg > 1:20095932/1‑68 (MQ=255) aCTGTCATAGAAACTCTCCTTAGCGATTATCGAGCTGAGCGCGAACTTTATTCAGCTCGGTGGAGTTg > 1:21039545/1‑68 (MQ=255) cTGTCATAGAAACTCTCCTTAGCGATTATCGAGCTGAGCGCGAACTTTATTCAGCTCGGTGGTGTTGa < 1:257604/68‑1 (MQ=255) tGTCATAGAAACTCTCCTTAGCGATTATCGAGCTGAGCGCGAACTTTATTCAGCTCGGTGGTGTTGAt > 1:10108473/1‑68 (MQ=255) tGTCATAGAAACTCTCCTTAGCGATTATCGAGCTGAGCGCGAACTTTATTCAGCTCGGTGGTGTTGAt > 1:19717826/1‑68 (MQ=255) gTCATAGAAACTCTCCTTAGCGATTATCGAGCTGAGCGCGAACTTTATTCAGCTCGGTGGTGTTGAt > 1:9344402/1‑67 (MQ=255) gTCATAGAAACTCTCCTTAGCGATTATCGAGCTGAGCGCGAACTTTATTCAGCTCGGTGGTGTTGAt > 1:14649540/1‑67 (MQ=255) gTCATAGAAACTCTCCTTAGCGATTATCGAGCTGAGCGCGAACTTTATTCAGCTCGGTGGTGTTGAt > 1:7842446/1‑67 (MQ=255) gTCATAGAAACTCTCCTTAGCGATTATCGAGCTGAGCGCGAACTTTATTCAGCTCGGTGGTGTTGAt > 1:11525377/1‑67 (MQ=255) gTCATAGAAACTCTCCTTAGCGATTATCGAGCTGAGCGCGAACTTTATTCAGCTCGGTGGTGTTGAt > 1:24370/1‑67 (MQ=255) gTCATAGAAACTCTCCTTAGCGATTATCGAGCTGAGCGCGAACTTTATTCAGCTAGGTGGTGTTGAt > 1:4066303/1‑67 (MQ=255) cATAGAAACTCTCCTTAGCGATTATCGAGCTGAGCGCGAACTTTATTCAGCTCGGTGGTGTTGATTCg < 1:11100752/68‑1 (MQ=255) cATAGAAACTCTCCTTAGCGATTATCGAGCTGAGCGCGAACTTTATTCAGCTCGGTGGTGTTGATTCg > 1:18796469/1‑68 (MQ=255) cATAGAAACTCTCCTTAGCGATTATCGAGCTGAGCGCGAACTTTATTCAGCTCGGTGGTGTTGATTCg > 1:12807941/1‑68 (MQ=255) cATAGAAACTCTCCTTAGCGATTATCGAGCTGAGCGCGAACTTTATTCAGCTCGGTGGTGTTGATTCg < 1:25322127/68‑1 (MQ=255) aGAAACTCTCCTTAGCGATTATCGAGCTGAGCGCGAACTTTATTCAGCTCGGTGGTGTTGATTCGATa > 1:3000170/1‑68 (MQ=255) aGAAACTCTCCTTAGCGATTATCGAGCTGAGCGCGAACTTTATTCAGCTCGGTGGTGTTGATTCGATa > 1:26408545/1‑68 (MQ=255) aGAAACTCTCCTTAGCGATTATCGAGCTGAGCGCGAACTTTATTCAGCTCGGTGGTGTTGATTCGATa > 1:12320864/1‑68 (MQ=255) aatctctCCTTAGCGATTATCGAGCTGAGCGCGAACTTTATTCAGCTCGGTGGTGTTGATTCGATAgg > 1:20779794/4‑68 (MQ=255) aaaCTCTCCTTAGCGATTATCGAGCTGAGCGCGAACTTTTTTCAGCTCGGTGGTGTTGATTCGATAgg > 1:4559710/1‑68 (MQ=255) aaaCTCTCCTTAGCGATTATCGAGCTGAGCGCGAACTTTATTCAGCTCGGTGGTGTTGATTCGATAgg > 1:6102805/1‑68 (MQ=255) aaaCTCTCCTTAGCGATTATCGAGCTGAGCGCGAACTTTATTCAGCTCGGTGGTGTTGATTCGATAgg > 1:13885647/1‑68 (MQ=255) aaaCTCTCCTTAGCGATTATCGAGCTGAGCGCGAACTTTATTCAGCTCGGTGGTGTTGATTCGATAgg > 1:14323862/1‑68 (MQ=255) aaaCTCTCCTTAGCGATTATCGAGCTGAGCGCGAACTTTATTCAGCTCGGTGGTGTTGATTCGATAgg > 1:10566333/1‑68 (MQ=255) aaaCTCTCCTTAGCGATTATCGAGCTGAGCGCGAACTTTATTCAGCTCGGTGGTGTTGATTCGATAgg > 1:8521134/1‑68 (MQ=255) aaaCTCTCCTTAGCGATTATCGAGCTGAGCGCGAACTTTATTCAGCTCGGTGGTGTTGATTCGATAgg > 1:100283/1‑68 (MQ=255) aaaCTCTCCTTAGCGATTATCGAGCTGAGCGCGAACTTTATTCAGCTCGGTGGTGTTGATTCGATAgg > 1:29747294/1‑68 (MQ=255) aaaCTCTCCTTAGCGATTATCGAGCTGAGCGCGAACTTTATTCAGCTCGGTGGTGTTGATTCGATAgg > 1:29163512/1‑68 (MQ=255) aaaCTCTCCTTAGCGATTATCGAGCTGAGCGCGAACTTTATTCAGCTCGGTGGTGTTGATTCGATAgg > 1:15141139/1‑68 (MQ=255) aaaCTCTCCTTAGCGATTATCGAGCTGAGCGCGAACTTTATTCAGCTCGGTGGTGTTGATTCGATAgg > 1:20385850/1‑68 (MQ=255) aaaCTCTCCTTAGCGATTATCGAGCTGAGCGCGAACTTTATTCAGCTCGGTGGTGTTGATTCGATAgg > 1:1578423/1‑68 (MQ=255) aaaCTCTCCTTAGCGATTATCGAGCTGAGCGCGAACTTTATTCAGCTCGGTGGTGTTGATTCGATAgg > 1:24163524/1‑68 (MQ=255) aaaCTCTCCTTAGCGATTATCGAGCTGAGCGCGAACTTTATTCAGCTCGGTGGTGTTGATTCGATAgg > 1:2469141/1‑68 (MQ=255) aaaCTCTCCTTAGCGATTATCGAGCTGAGCGCGAACTTTATTCAGCTCGGTGGTGTTGATTCGATAgg > 1:16587506/1‑68 (MQ=255) aaaCTCTCCTTAGCGATTATCGAGCTGAGCGCGAACTTTATTCAGCTCGGTGGTGTTG‑TTCGATAgg > 1:2512731/1‑67 (MQ=255) aaaCTCTCCTTAGCGATTATCGACCTGAGCGCGAACTTTATTCAGCACGGTGGTGTTGATTCGATAgg > 1:5171109/1‑68 (MQ=255) aaCTCTCCTTAGCGATTATCGAGCTGAGCGCGAACTTTATTCAGCTCGGTGGTGTTGATTCGATAgg < 1:26754663/67‑1 (MQ=255) aCTCTCCTTAGCGATTATCGAGCTGAGCGCGAACTTTATTCAGCTCGGTGGTGTTGATTCGATAgg > 1:28184872/1‑66 (MQ=255) aCTCTCCTTAGCGATTATCGAGCTGAGCGCGAACTTTATTCAGCTCGGTGGTGTTGATTCGATAgg > 1:10237288/1‑66 (MQ=255) aCTCTCCTTAGCGATTATCGAGCTGAGCGCGAACTTTATTCAGCTCGGTGGTGTTGATTCGATAgg > 1:13093349/1‑66 (MQ=255) aCTCTCCTTAGCGATTATCGAGCTGAGCGCGAACTTTATTCAGCTCGGTGGTGTTGATTCGATAgg > 1:31205992/1‑66 (MQ=255) aCTCTCCTTAGCGATTATCGAGATGAGCGCGAACTTTATTCAGCTCGGTGGTGTTGATTCGATAggga > 1:22238539/1‑67 (MQ=255) ctcCTTAGCGATTATCGAGCTGAGCGCGAACTTTATTCAGCTCGGTGGTGTTGATTCGATAGGGCTgg < 1:16896455/68‑1 (MQ=255) tcCTTAGCGATTATCGAGCTGAGCGCGAACTTTATTCAGCTCGGTGGTGTTGATTCGATAGGGCTGGc < 1:6658989/68‑1 (MQ=255) tAGCGATTATCGAGCTGAGCGCGAACTTTATTCAGCTCGGTGGTGTTGATTCGATAGGGCTGGCCAtt < 1:9164560/68‑1 (MQ=255) aGCGATTATCGAGCTGAGCGCGAACTTTATTCAGCTCGGTGGTGTTGATTCGATAGGGCTGGCCATTg < 1:30798924/68‑1 (MQ=255) gCGATTATCGAGCTGAGCGCGAACTTTATTCAGCTCGGTGGTGTTGATTCGATAGGGCTGGCCATTg > 1:16366835/1‑67 (MQ=255) gCGATTATCGAGCTGAGCGCGAACTTTATTCAGCTCGGTGGTGTTGATTCGATAGGGCTGGCCATTg > 1:7260134/1‑67 (MQ=255) gATTATCGAGCTGAGCGCGAACTTTATTCAGCTCGGTGGTGTTGATTCGATAGGGCTGGCCATTGACg > 1:22692078/1‑68 (MQ=255) ttttCGAGCTGAGCGCGAACTTTATTCAGCTCGGTGGTGTTGATTCGATCGGGCTGGCCATTGACGGa < 1:22970756/65‑1 (MQ=255) aTCGAGCTGAGCGCGAACTTTATTCAGCTCGGTGGTGTTGATTCGATAGGGCTGGCCATTGACGGACt < 1:9578827/68‑1 (MQ=255) aTCGAGCTGAGCGCGAACTTTATTCAGCTCGGTGGTGTTGATTCGATAGGGCTGGCCATTGACGGACt < 1:11853883/68‑1 (MQ=255) aGCTGAGCGCGAACTTTATTCAGCTCGGTGGTGTTGATTCGATAGGGCTGGCCATTGACGGACTTGAt > 1:15006241/1‑68 (MQ=255) gCTGAGCGCGAACTTTATTCAGCTCGGTGGTGTTGATTCGATAGGGCTGGCCATTGACGGACTTGATa > 1:698350/1‑68 (MQ=255) gCTGAGCGCGAACTTTATTCAGCTCGGTGGTGTTGATTCGATAGGGCTGGCCATTGACGGACTTGATa > 1:1736302/1‑68 (MQ=255) gCTGAGCGCGAACTTTATTCAGCTCGGTGGTGTTGATTCGATAGGGCTGGCCATTGACGGACTTGATa > 1:31590908/1‑68 (MQ=255) gCTGAGCGCGAACTTTATTCAGCTCGGTGGTGTTGATTCGATAGGGCTGGCCATTGACGGACTTGATa > 1:31990466/1‑68 (MQ=255) tGAGCGCGAACTTTATTCAGCTCGGTGGTGTTGATTCGATAGGGCTGGCCATTGACGGACTTGATAAg > 1:27011134/1‑68 (MQ=255) tGAGCGCGAACTTTATTCAGCTCGGTGGTGTTGATTCGATAGGGCTGGCCATTGACGGACTTGATAAg > 1:1995051/1‑68 (MQ=255) tGAGCGCGAACTTTATTCAGCTCGGTGGTGTTGATTCGATAGGGCTGGCCATTGACGGACTTGATAAg > 1:27510661/1‑68 (MQ=255) cgcgAACTTTATTCAGCTCGGTGGTGTTGATTCGATAGGGCTGGCCATTGACGGACTTGATAAGtttt > 1:21520082/1‑68 (MQ=255) gcgAACTTTATTCAGCTCGGTGGTGTTGATTCGATAGGGCTGGCCATTGACGGACTTGATAAGttttt > 1:13712256/1‑68 (MQ=255) cTTTATTCAGCTCGGTGGTGTTGATTCGATAGGGCTGGCCATTGACGGACTTGATAAGTTTTTTGGtt > 1:31036059/1‑68 (MQ=255) ttCAGCTCGGTGGTGTTGATTCGATAGGGCTGGCCATTGACGGACTTGATAAGTTTTTTGGTTTTGAg > 1:17100497/1‑68 (MQ=255) | GAAAAGTGAAGTGGTGTACTGTCATAGAAACTCTCCTTAGCGATTATCGAGCTGAGCGCGAACTTTATTCAGCTCGGTGGTGTTGATTCGATAGGGCTGGCCATTGACGGACTTGATAAGTTTTTTGGTTTTGAG > CP009273/4523577‑4523711 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |