| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 4586926 = | NA (NA) | 3 (0.010) | 3/88 | NT | NA | noncoding (13/39 nt) | REP350 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP350 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | CP009273 | 4586955 = | NA (NA) | intergenic (+126/+12) | yjjN/opgB | L‑galactonate oxidoreductase/phosphoglycerol transferases I and II | |||||
Only 100 of 651 total aligned reads displayed.
GCGTCCGGGGAAGTGTTGGGCGCTG‑TTTTTTTTGTTTCTTAATAATGTGTTGTAAGCCGTAGAAGGCGTGTAGGTCGCACCCTATGCGACCTACACATCAGTCAGGAATTACCCTTCACGTTCTACCACTTTAAT > CP009273/4586859‑4586993 | gcgtaagctcgggatcggcatggtggaaattaaagtggtagaacgtgaagggtaattcctgactgatg > 1:17082747‑M1/68‑68 (MQ=255) gcgtaagctcgggatcggcaaggtggaaattgaagtggtagaacgtgaagggtaattcctgactgatg > 1:29568222‑M1/68‑68 (MQ=255) gcgcaagctcgcgatcggcatggtggaaattaaagtggtagaacgtgaagggtaattcctgactgatg > 1:24087546‑M1/68‑68 (MQ=255) gTCCGGGGAAGTGTTGGGCGCTGTTTTTTTTTGTTTCTTAATAATGTGTTGTAAGCCGTAGAAGGCg < 1:11487709/67‑1 (MQ=255) gTCCGGGGAAGTGTTGGGCGCTG‑TTTTTTTTGTTTCTTAATAATGTGTTGTAAGCCGTAGAAGGCgt < 1:10832769/67‑1 (MQ=255) gTCCGGGGAAGTGTTGGGCGCTG‑TTTTTTTTGTTTCTTAATAATGTGTTGTAAGCCGTAGAAGGCg < 1:31072098/66‑1 (MQ=255) gTCCGGGGAAGTGTTGGGCGCTG‑TTTTTTTTGTTTCTTAATAATGTGTTGTAAGCCGTAGAAGGCg < 1:17994930/66‑1 (MQ=255) gtaagctcgggatcggcatggtggaaattaaagtggtagaacgtgaagggtaattcctgactgatgtg < 1:21803523‑M1/3‑1 (MQ=255) cGGGGAAGTGTTGGGCGCTG‑TTTTTTTTGTTTCTTAATAATGTGTTGTAAGCCGTAGAAGGCGTGTAg < 1:7848732/68‑1 (MQ=255) agctcgggatcggcatggtggaaattaaagtggtagaacgtgaagggtaattcctgactgatGTGTAg > 1:27965700‑M1/63‑68 (MQ=255) agctcgggatcggcatggtggaaattaaagtggtagaacgtgaagggtaattcctgactgatGTGTAg > 1:26263172‑M1/63‑68 (MQ=255) ggAAGTGTTGGGCGCTG‑TTTTTTTTGTTTCTTAATAATGTGTTGTAAGCCGTAGAAGGCGTGTAGGt < 1:20884460/67‑1 (MQ=255) ggAAGTGTTGGGCGCTG‑TTTTTTTTGTTTCTTAATAATGTGTTGTAAGCCGTAGAAGGCGTGTAGGt < 1:16532036/67‑1 (MQ=255) ggAAGTGTTGGGCGCTG‑TTTTTTTTGTTTCTTAATAATGTGTTGTAAGCCGTAGAAGGCGTGTAGGt < 1:3199750/67‑1 (MQ=255) ggAAGTGTTGGGCGCTG‑TTTTTTTTGTTTCTTAATAATGTGTTGTAAGCCGTAGAAGGCGTGTAGGTc > 1:12158115/1‑68 (MQ=255) ctcgggatcggcatggtggaaattaaagtggtagaacgtgaagggtaattcctgactgatGTGTAgg < 1:5903577‑M1/7‑1 (MQ=255) ctcgggatcggcatggtggaaattaaagtggtagaacgtgaagggtaattcctgactgatGTGTAgg < 1:8483168‑M1/7‑1 (MQ=255) tcgggatcggcatggttgaaattaaagtgttagaacgtgaagggtaattcctgactgatGTGTAGGt > 1:30366528‑M1/60‑67 (MQ=255) tcgggatcggcatggtggaaattaaagtggtagaacgtgaagggtaattcctgactgatGTGTAGGt > 1:8740223‑M1/60‑67 (MQ=255) tcgggatcggcatggtggaaattaaagtggtagaacgtgaagggtaattcctgactgatGTGTAGGt > 1:18575093‑M1/60‑67 (MQ=255) tcgggatcggcatggtggaaattaaagtggtagaacgtgaagggtaattcctgactgatGTGTAGGt > 1:15138707‑M1/60‑67 (MQ=255) tcgggatcggcatggtggaaattaaagtggtagaacgtgaagggtaattcctgactgatGTGTAGGt > 1:31303832‑M1/60‑67 (MQ=255) tcgggagcggcatggtggaaattaaagtggtagaacgtgaagggtaattcctgactgatGTGTAGGt > 1:2046711‑M1/60‑67 (MQ=255) gAAGTGTTGGGCGCTG‑TTTTTTTTGTTTCTTAATAATGTGTTGTAAGCCGTAGAAGGCGTGTAGGTc > 1:22507904/1‑67 (MQ=255) gAAGTGTTGGGCGCTG‑TTTTTTTTGTTTCTTAATAATGTGTTGTAAGCCGTAGAAGGCGTGTAGGTc > 1:22882459/1‑67 (MQ=255) cgggatcggcatggtggaaattaaagtggtagaacgtgaagggtaattcctgactgatGTGTAGGTCg > 1:4680045‑M1/59‑68 (MQ=255) gggatcggcatggtggaaattaaagtggtagaacgtgaagggtaattcctgactgatGTGTAGGTCGc > 1:25177583‑M1/58‑68 (MQ=255) gtTTGGCGCTG‑TTTTTTTTGTTTCTTAATAATGTGTTGTAAGCCGTAGAAGGCGTGTAGGTCGCAcc < 1:31769609/67‑1 (MQ=255) gtTGGGCGCTG‑TTTTTTTTGTTTCTTAATAATGTGTTGTAAGCCGTAGAAGGCGTGTAGGTCGCAcc < 1:4081104/67‑1 (MQ=255) gtTGGGCGCTG‑TTTTTTTTGTTTCTTAATAATGTGTTGTAAGCCGTAGAAGGCGTGTAGGTCGCAcc < 1:25604445/67‑1 (MQ=255) tGGGCGCTG‑TTTTTTTTGTTTCTTAATAATGTGTTGTAAGCCGTAGAAGGCGTGTAGGTCGCACCCt < 1:21946408/67‑1 (MQ=255) tGGGCGCTG‑TTTTTTTTGTTTCTTAATAATGTGTTGTAAGCCGTAGAAGGCGTGTAGGTCGCACCCt < 1:6612501/67‑1 (MQ=255) tGGGCGCTG‑TTTTTTTTGTTTCTTAATAATGTGTTGTAAGCCGTAGAAGGCGTGTAGGTCGCACCCTa < 1:12408287/68‑1 (MQ=255) tGGGCGCTG‑TTTTTTTCGTTTCTTAATAATGTGTTGTAAGCCGTAGAAGGCGTGTAGGTCGCACCCt < 1:23635352/67‑1 (MQ=255) gcgcTG‑TTTTTTTTGTTTCTTAATAATGTGTTGTAAGCCGTAGAAGGCGTGTAGGTCGCACCCTATGc > 1:10665001/1‑68 (MQ=255) gcgcTG‑TTTTTTTTGTTTCTTAATAATGTGTTGTAAGCCGTAGAAGGCGTGTAGGTCGCACCCTATGc > 1:21129918/1‑68 (MQ=255) gcgcTG‑TTTTTTTTGTTTCTTAATAATGTGTTGTAAGCCGTAGAAGGCGTGTAGGTAGCACCCTATGc > 1:10031241/1‑68 (MQ=255) cgcTG‑TTTTTTTTGTTTCTTAATAATGTGTTGTAAGCCGTAGAAGGCGTGTAGGTCGCACCCTATGc < 1:29889850/67‑1 (MQ=255) gcTG‑TTTTTTTTGTTTCTTAATAATGTGTTGTAAGCCGTAGAAGGCGTGTAGGTCGCACCCTATGCg > 1:30911326/1‑67 (MQ=255) gcTG‑TTTTTTTTGTTTCTTAATAATGTGTTGTAAGCCGTAGAAGGCGTGTAGGTCGCACCCTATGCGa < 1:710180/68‑1 (MQ=255) gcTG‑TTTTTTTTGTTTCTTAATAATGTGTTGTAAGCCGTAGAAGGCGTGTAGGTCGCACCCTATGCGa < 1:11415911/68‑1 (MQ=255) gcTG‑TTTTTTTTGTTTCTTAATAATGTGTTGTAAGCCGTAGAAGGCGTGTAGGTCGCACCCTATGCGa < 1:22699606/68‑1 (MQ=255) gcTG‑TTTTTTTTGTTTCTTAATAATGTGTTGTAAGCCGTAGAAGGCGTGTAGGTCGCACCCTATGCGa < 1:15681458/68‑1 (MQ=255) gcTG‑TTTTTTTTGTTTCTTAATAATGTGTTGTAAGCCGTAGAAGGCGTGTAGGTCGCACCCTATGCGa < 1:30108292/68‑1 (MQ=255) gcTG‑TTTTTTTTGTTTCTTAATAATGTGTTGTAAGCCGTAGAAGGCGTGTAGGTCGCACCCTATGCGa < 1:17378971/68‑1 (MQ=255) gcTG‑TTTTTTTTGTTTCTTAATAATGTGTTGTAAGCCGTAGAAGGCGTGTAGGGCGCACCCTATGCGa < 1:13590688/68‑1 (MQ=255) tG‑TTTTTTTTGTTTCTTAATAATGTGTTGTAAGCCGTAGAAGGCGTGTAGGTCGCACCCTATGCGAc < 1:13924884/67‑1 (MQ=255) tG‑TTTTTTTTGTTTCTTAATAATGTGTTGTAAGCCGTAGAAGGCGTGTAGGTCGCACCCTATGCGAc < 1:13336309/67‑1 (MQ=255) tG‑TTTTTTTTGTTTCTTAATAATGTGTTGTAAGCCGTAGAAGGCGTGTAGGTCGCACCCTATGCGAc < 1:7318708/67‑1 (MQ=255) tG‑TTCTTTTTGTTTCTTAATAATGTGTTGTAAGCCGTAGAAGGCGTGTAGGTCGCACCCTATGCGAc < 1:9163024/67‑1 (MQ=255) g‑TTTTTTTTGTTTCTTAATAATGTGTTGTAAGCCGTAGAAGGCGTGTAGGTCGCACCCTATGCGACCt < 1:27111133/68‑1 (MQ=255) g‑TTTTTTTTGTTTCTTAATAATGTGTTGTAAGCCGTAGAAGGCGTGTAGGTCGCACCCTATGCGACCt < 1:427582/68‑1 (MQ=255) g‑TTTTTTTTGTTTCTTAATAATGTGTTGTAAGCCGTAGAAGGCGTGTAGGTCGCACCCTATGCGACCt < 1:1291924/68‑1 (MQ=255) g‑TTTTTTTTGTTTCTTAATAATGTGTTGTAAGCCGTAGAAGGCGTGTAGGTCGCACCCTATGCGACCt < 1:3725313/68‑1 (MQ=255) tttttttGTTTCTTAATAATGTGTTGTAAGCCGTAGAAGGCGTGTAGGTCGCACCCTATGCGACCTac < 1:3921324/68‑1 (MQ=255) tttttttGTTTCTTAATAATGTGTTGTAAGCCGTAGAAGGCGTGTAGGTCGCACCCTATGCGACCTac < 1:29334814/68‑1 (MQ=255) tttttttGTTTCTTAATAATGTGTTGTAAGCCGTAGAAGGCGTGTAGGTCGCACCCTATGCGACCTac < 1:21468085/68‑1 (MQ=255) gTTTCTTAATAATGTGTTGTAAGCCGTAGAAGGCGTGTAGGTCGCACCCTATGCGACCTACACAtcag < 1:12558410/68‑1 (MQ=255) gTTTCTTAATAATGTGTTGTAAGCCGTAGAAGGCGTGTAGGTCGCACCCTATGCGACCTACACAtcag < 1:14284405/68‑1 (MQ=255) ttCTTAATAATGTGTTGTAAGCCGTAGAAGGCGTGTAGGTCGCACCCTATGCGACCTACACAtcagt < 1:31478268/67‑1 (MQ=255) ttCTTAATAATGTGTTGTAAGCCGTAGAAGGCGTGTAGGTCGCACCCTATGCGACCTACACAtcagt < 1:16985099/67‑1 (MQ=255) taataaTGTGTTGTAAGCCGTAGAAGGCGTGTAGGTCGCACCCTATGCGCCCTACACATCAGTCAGGa > 1:28770966/1‑68 (MQ=255) taataaTGTGTTGTAAGCCGTAGAAGGCGTGTAGGTCGCACCCTATGCGACCTACACATCAGTCAGGa < 1:3297739/68‑1 (MQ=255) cataatGGGTTGTAAGCCGTAGAAGGCGTGTAGGGCGCACCCTATGCGACCTACACATCAGTCAGGa < 1:27390401/66‑1 (MQ=255) ataatGTGTTGTAAGCCGTAGAAGGCGTGTAGGTCGCACCCTATGCGACCTACACATCAGTCAGGAAt > 1:25798810/1‑68 (MQ=255) cgtgaagggtaattcctgactgatGTGTAGGTCGCACCCTATGCGACCTACACATCAGTCAGGAAtt < 1:20301925‑M1/43‑1 (MQ=255) aatGTGTTGTAAGCCGTAGAAGGCGTGTAGGTCGCACCCTATGCGACCTACACATCAGTCAGGAAtt > 1:11206612/1‑67 (MQ=255) atGTGTTGTAAGCCGTAGAAGGCGTGTAGGTCGCACCCTATGCGACCTACACATCAGTCAGGAATTa > 1:6393811/1‑67 (MQ=255) gtgtTGTAAGCCGTAGAAGGCGTGTAGGTCGCACCCTATGCGACCTacac > 1:19546046/1‑50 (MQ=255) gttgtAAGCCGTAGAAGGCGTGTAGGTCGCACCCTATGCGACCTACACATCAGTCAGGAATTACCCt < 1:24379694/67‑1 (MQ=255) gttgtAAGCCGTAGAAGGCGTGTAGGTCGCACCCTATGCGACCTACACATCAGTCAGGAATTACCCt < 1:16122674/67‑1 (MQ=255) gttgtAAGCCGTAGAAGGCGTGTAGGTCGCACCCTATGCGACCTACACATCAGTCAGGAATTACCCt < 1:9251892/67‑1 (MQ=255) gttgtAAGCCGTAGAAGGCGTGTAGGTCGCACCCTATGCGACCTACACATCAGTCAGGAATTACCCt > 1:971026/1‑67 (MQ=255) tgtAAGCCGTAGAAGGCGTGTAGGTCGCACCCTATGCGACCTACACATCAGTCAGGAATTACCCTTc > 1:24533739/1‑67 (MQ=255) tgtAAGCCGTAGAAGGCGTGTAGGTCGCACCCTATGCGACCTACACATCAGTCAGGAATTACCCTTc > 1:14935397/1‑67 (MQ=255) tgtAAGCCGTAGAAGGCGTGTAGGTCGCACCCTATGCGACCTACACATCAGTCAGGAATTACCCTTc > 1:11819057/1‑67 (MQ=255) gtAAGCCGTAGAAGGCGTGTAGGTCGCACCCTATGCGACCTACACATCAGTCAGGAATTACCCTTCAc < 1:23871281/68‑1 (MQ=255) gtAAGCCGTAGAAGGCGTGTAGGTCGCACCCTATGCGACCTACACATCAGTCAGGAATTACCCTTCAc > 1:19231971/1‑68 (MQ=255) aaGCCGTAGAAGGCGTGTAGGTCGCACCCTATGCGACCTACACATCAGTCAGGAATTACCCTTCACg < 1:5066816/67‑1 (MQ=255) aaGCCGTAGAAGGCGTGTAGGTCGCACCCTATGCGACCTACACATCAGTCAGGAATTACCCTTCACGt > 1:21636745/1‑68 (MQ=255) aaGCCGTAGAAGGCGTGTAGGTCGCACCCTATGCGACCTACACATCAGTCAGGAATTACCCTTCACGt > 1:5364074/1‑68 (MQ=255) aaGCCGTAGAAGGCGTGTAGGTCGCACCCTATGCGACCTACACATCAGTCAGGAATTACCCTTCACGt > 1:19884225/1‑68 (MQ=255) aGCCGTAGAAGGCGTGTAGGTCGCACCCTATGCGACCTACACATCAGTCAGGAATTACCCTTCACGtt < 1:10473821/68‑1 (MQ=255) gCCGTAGAAGGCGTGTAGGTCGCACCCTATGCGACCTACACATCAGTCAGGAATTACCCTTCACGt > 1:1447540/1‑66 (MQ=255) gCCGTAGAAGGCGTGTAGGTCGCACCCTATGCGACCTACACATCAGTCAGGAATTACCCTTCACGt > 1:1680495/1‑66 (MQ=255) gCCGTAGAAGGCGTGTAGGTCGCACCCTATGCGACCTACACATCAGTCAGGAATTACCCTTCACGt > 1:9476887/1‑66 (MQ=255) gCCGTAGAAGGCGTGTAGGTCGCACCCTATGCGACCTACACATCAGTCAGGAATTACCCTTCACGt > 1:3055952/1‑66 (MQ=255) gCCGTAGAAGGCGTGTAGGTCGCACCCTAGGCGACCTACACATCAGTCAGGAAAAACCCTTCCCGt > 1:6144432/1‑66 (MQ=255) aaGGCGTGTAGGTCGCACCCTATGCGACCTACACATCAGTCAGGAATTACCGTTCACGTTCTACCACt > 1:18256017/1‑68 (MQ=255) aaGGCGTGTAGGTCGCACCCTATGCGACCTACACATCAGTCAGGAATTACCCTTCACGTTCTACCACt > 1:18749611/1‑68 (MQ=255) aaGGCGTGTAGGTCGCACCCTATGCGACCTACACATCAGTCAGGAATTACCCTTCACGTTCTACCACt > 1:24838331/1‑68 (MQ=255) aaGGCGTGTAGGTCGCACCCTATGCGACCTACACATCAGTCAGGAATTACCCTTCACGTTCTACCACt > 1:26550495/1‑68 (MQ=255) aGGCGTGTAGGTCGCACCCTATGCGACCTACACATCAGTCAGGAATTACCCTTCACGTTCTACCAc < 1:15856326/66‑1 (MQ=255) aGGCGTGTAGGTCGCACCCTATGCGACCTACACATCAGTCAGGAATTACCCTTCACGTTCTACCACt < 1:19996032/67‑1 (MQ=255) aGGCGTGTAGGTCGCACCCTATGCGACCTACACATCAGTCAGGAATTACCCTTCACGTTCTACCACt < 1:8273419/67‑1 (MQ=255) aGGCGTGTAGGTCGCACCCTATGCGACCTACACATCAGTCAGGAATTACCCTTCACGTTCTACCACt < 1:9024413/67‑1 (MQ=255) gCGTGTAGGTCGCCCCCTATGCGACCTACACATCAGTCAGGAATTACCCTTCACGTTCTACCACTTTa > 1:28286787/1‑68 (MQ=255) gCGTGTAGGTCGCACCCTATGCGCCCTACACATCAGTCAGGAATTACCCTTCACGTTCTACCACTTTa > 1:1021985/1‑68 (MQ=255) cGTGTAGGTCGCACCCTATGCGACCTACACATCAGTCAGGAATTACCCTTCACGTTCTACCACTTTaa > 1:16312055/1‑68 (MQ=255) GTGTAGGTCGCACCCTATGCGACGTACACATCAGTCAGGAATTACCCTTCACGTTCTACCACTTTaa > 1:17562099‑M1/1‑67 (MQ=255) | GCGTCCGGGGAAGTGTTGGGCGCTG‑TTTTTTTTGTTTCTTAATAATGTGTTGTAAGCCGTAGAAGGCGTGTAGGTCGCACCCTATGCGACCTACACATCAGTCAGGAATTACCCTTCACGTTCTACCACTTTAAT > CP009273/4586859‑4586993 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |