| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 4603957 | 233 (0.610) | 12 (0.040) | 7/94 | NT | 5.5% | coding (660/780 nt) | yjjV | putative DNase |
| ? | CP009273 | = 4603970 | 214 (0.660) | coding (673/780 nt) | yjjV | putative DNase | |||||
Only 100 of 409 total aligned reads displayed.
CGCTGGCATCGTTATTGCTGGAAACCGACGCGCCGGATATGCCGCTCAACGGTTTTCAGGGGCAGCCTAACCGCCCGGAGCAGGCTGCCCGTGTGTTCGCCGTGCTTTGCGAGTTGCGCCGGGAACCGGCGGATG > CP009273/4603890‑4604024 | cGCTGGCATCGTTATTGCTGGAAACCGACGCGCCGGATATGCCGCTCAACGGTTTTCAGGGGCAGCCT > 1:17154899‑M1/1‑68 (MQ=255)cGCTGGCATCGTTATTGCTGGAAACCGACGCGCCGGATATGCCGCTCAACGGTTTTCAGGGGCAGCCT > 1:11191013‑M1/1‑68 (MQ=255) cTGGCATCGTTATTGCTGGAAACCGACGCGCCGGATATGCCGCTCAACGGTTTTCAGGGGCAGCCTa > 1:7418538/1‑67 (MQ=255) agcGTTATTGCTGGAAACCGACGCGCCGGATATGCCGCTCAACGGTTTTCAGGGGCAGCCTAACCGc < 1:6760072/65‑1 (MQ=255) aTCGTTATTGCTGGAAACCGACGCGCCGGATATGCCGGTCAACGGTTTTCAGGGGCAGCCTAACCGc < 1:11494255/67‑1 (MQ=255) aTCGTTATTGCTGGAAACCGACGCGCCGGATATGCCGCTCAACGGTTTTCAGGGGCAGCCTAACCGc < 1:5417035/67‑1 (MQ=255) aTCGTTATTGCTGGAAACCGACGCGCCGGATATGCCGCTCAACGGTTTTCAGGGGCAGCCTAACCGc < 1:12862052/67‑1 (MQ=255) aTCGTTATTGCTGGAAACCGACGCGCCGGATATGCCGCTCAACGGTTTTCAGGGGCAGCCTAACCGc < 1:10075387/67‑1 (MQ=255) cGTTATTGCTGGAAACCGACGCGCCGGATATGCCGCTCAACGGTTTTCAGGGGCAGCCTAACCGCCCg > 1:26127188/1‑68 (MQ=255) gTTATTGCTGGAAACCGACGCGCCGGATATGCCGCTCATCGGTTTTCAGGGGCAGCCTAACCGCCCgg < 1:10701743/68‑1 (MQ=255) gTTATTGCTGGAAACCGACGCGCCGGATATGCCGCTCAACGGTTTTCAGGGGCAGCCTAACCGCCCgg < 1:18379935/68‑1 (MQ=255) tATTGCTGGAAACCGCCGCGCCGGATATGCCGCGCAACGGTTTTCAGGGGCAGCCTAACCGCCCGGAg < 1:13865862/68‑1 (MQ=255) tATTGCTGGAAACCGACGCGCCGGATATGCCGCTCAACGGTTTTCAGGGGCAGCCTgctccgggcggt < 1:29883946‑M1/68‑13 (MQ=255) tATTGCTGGAAACCGACGCGCCGGATATGCCGCTCAACGGTTTTCAGGGGCAGCCTAACCGCCCGGa < 1:7977322/67‑1 (MQ=255) tATTGCTGGAAACCGACGCGCCGGATATGCCGCTCAACGGTTTTCAGGGGCAGCCTAACCGCCCGGa < 1:9781902/67‑1 (MQ=255) tGCTGGAAACCGACGCGCCGGATATGCCGCTCAACGGTTTTCAGGGGCAGCCTAACCGCCCGGAGCag < 1:8810545‑M2/68‑3 (MQ=255) tGCTGGAAACCGACGCGCCGGATATGCCGCTCAACGGTTTTCAGGGGCAGCCTAACCGCCCGGAGCag > 1:29253373‑M2/1‑66 (MQ=255) gCTGGAAACCGACGCGCCGGATATGCCGCTCAACGGTTTTCAGGGGCAGCCTgctccgggcggttagg < 1:13264900‑M1/68‑17 (MQ=255) gCTGGAAACCGACGCGCCGGATATGCCGCTCAACGGTTTTCAGGGGCAGCCTAACCGCCCGGAGCagg > 1:889849‑M2/1‑65 (MQ=255) cTGGAAACCGACGCGCCGGATATGCCGCTCAACGGTTTACAGGGGCAGCCTAACCGCCCGGAGAAg > 1:24903168/1‑66 (MQ=255) tGGAAACCGACGCGCCGGATATGCCGCTCAACGGTTTTCAGGGGCAGCCTAACCGCCCGGAGCaggct > 1:10237168‑M2/1‑63 (MQ=255) tGGAAACCGACGCGCCGGATATGCCGCTCAACGGTTTTCAGGGGCAGCCTAACCGCCCGGAGCaggct > 1:374134‑M2/1‑63 (MQ=255) tGGAAACCGACGCGCCGGATATGCCGCTCAACGGTTTTCAGGGGCAGCCTAACCGCCCGGAGCaggct > 1:2142513‑M2/1‑63 (MQ=255) tGGAAACCGACGCGCCGGATATGCCGCTCAACGGTTTTCAGGGGCAGCCTAACCGCCCGGAGCag < 1:4514360‑M2/65‑3 (MQ=255) tGGAAACCGACGCGCCGGATATGCCGCTCAACGGTTTTCAGGGGCAGCCTAACCGCCCGGAGCag < 1:25543896‑M2/65‑3 (MQ=255) aaaCCGACGCGCCGGATATGCCGCTCAACGGTTTTCAGGGGCAGCCTAACCGCCCGGAGCaggctgc > 1:6379655‑M2/1‑60 (MQ=255) aaaCCGACGCGCCGGATATGCCGCTCAACGGTTTTCAGGGGCAGCCTAACCGCCCGGAGCaggctgc > 1:14788293‑M2/1‑60 (MQ=255) aaCCGACGCGCCGGATATGCCGCTCAACGGTTTTCAGGGGCAGCCTAACCGCCCGGAGCaggctgcc > 1:5846106‑M2/1‑59 (MQ=255) aCCGACGCGCCGGATATGCCGCTCAACGGTTTTCAGGGGCAGCCTgctccgggcggttaggctgcccg > 1:7687348‑M1/1‑45 (MQ=255) aCCGACGCGCCGGATATGCCGCTCAACGGTTTTCAGGGGCAGCCTAACCGCCCGGAGCaggctgcccc > 1:10507466‑M2/1‑58 (MQ=255) aCCGACGCGCCGGATATGCCGCTCAACGGTTTTCAGGGGCAGCCTAACCGCCCGGAGCAGGCTGCCCg > 1:2418609/1‑68 (MQ=255) aCCGACGCGCCGGATATGCCGCTCAACGGTTTTCAGGGGCAGCCTAACCGCCCGGAGCAGGCTGCCCg > 1:31487824/1‑68 (MQ=255) aCCGACGCGCCGGATATGCCGCTCAACGGTTTTCAGGGGCAGCCTAACCGCCCGGAGCAGGCTGCCCg < 1:30719632/68‑1 (MQ=255) aCCGACGCGCCGGATATGCCGCTCAACGGTTTTCAGGGGCAGCCTAACCGCCCGGAGCAGGCTGCCCg > 1:30318620/1‑68 (MQ=255) aCCGACGCGCCGGATATGCCGCTCAACGGCTATCAGGGGCAGCCTAACCGCCCGGAGCaggctgcccc > 1:23529556‑M2/1‑58 (MQ=255) gACGCGCCGGATATGCCGCTCAACGGTTTTCAGGGGCAGCCTAACCGCCCGGAGCAGGCTGCCCgtgt > 1:6995948/1‑68 (MQ=255) cgcgCCGGATATGCCGCTCAACGGTTTTCAGGGGCAGCCTAACCGCCCGGAGCAGGCTGCCCgtgtgt < 1:15237666/68‑1 (MQ=255) cGGATATGCCGCTCAACGGTTTTCAGGGGCAGCCTAACCGCCCGGAGCAGGCTGCCCGTGTGTTCGc < 1:22220072/67‑1 (MQ=255) atatGCCGCTCATCGGTTTTCAGGGGCAGCCAAACCGCCCGGATCAGGCTGCCCGTGTGTTCGCCGt < 1:15765902/67‑1 (MQ=255) atatGCCGCTCAACGGTTTTCAGGGGCAGCCTAACCGCCCGGAGCAGGCTGCCCGTGTGTTCGCCGt > 1:21851454/1‑67 (MQ=255) tatGCCGCTCAACGGTTTTCAGGGGCAGCCTAACCGCCCGGAGCAGGCTGCCCGTGTGTTCGCCGt > 1:11369722/1‑66 (MQ=255) tatGCCGCTCAACGGTTTTCAGGGGCAGCCTAACCGCCCGGAGCAGGCTGCCCGTGTGTTCGCCGTGc < 1:14225487/68‑1 (MQ=255) tatGCCGCTCAACGGTTTTCAGGGGCAGCCTAACCGCCCGGAGCAGGCTGCCCGTGTGTTCGCCGTGc < 1:4038093/68‑1 (MQ=255) tatGCCGCTCAACGGTTTTCAGGGGCAGCCTAACCGCCCGGAGCAGGCTGCCCGTGTGTTCGCCGTGc < 1:19536162/68‑1 (MQ=255) tatGCCGCTCAACGGTTTTCAGGGGCAGCCTAACCGCCCGGAGCAGGCTGCCCGTGTGTTCGCCGTGc < 1:14950518/68‑1 (MQ=255) atGCCGCTCAACGGTTTTCAGGGGCAGCCTAACCGCCCGGAGCAGGCTGCCCGTGTGTTCGCCGTGCt < 1:28673821/68‑1 (MQ=255) atGCCGCTCAACGGTTTTCAGGGGCAGCCTAACCGCCCGGAGCAGGCTGCCCGTGTGTTCGCCGTGCt < 1:16230712/68‑1 (MQ=255) tGCCGCTCAACGGTTTTCAGGGGCAGCCTAACCGCCCGGAGCAGGCTGCCCGTGTGTTCGCCGTGCtt > 1:11880736/1‑68 (MQ=255) tGCCGCTCAACGGTTTTCAGGGGCAGCCTAACCGCCCGGAGCAGGCTGCCCGTGTGTTCGCCGTGCtt > 1:24412159/1‑68 (MQ=255) ccGCTCAACGGTTTTCAGGGGCAGCCTggtccgggcggttaggctgcccctgaaacccgttgagcggc > 1:11143128‑M1/1‑27 (MQ=255) ccGCTCAACGGTTTTCAGGGGCAGCCTgctccgggcggttaggctgcccctgaaaaccgttgagcggc > 1:30922220‑M1/1‑27 (MQ=255) ccGCTCAACGGTTTTCAGGGGCAGCCTAACCGCCCGGAGCAGGCTGCCCGTGTGTTCGCCGTGCttt > 1:22782139/1‑67 (MQ=255) ccGCTCAACGGTTTTCAGGGGCAGCCTAACCGCCCGGAGCAGGCTGCCCGTGTGTTCGCCGTGCttt > 1:6095438/1‑67 (MQ=255) ccGCTCAACGGTTTTCAGGGGCAGCCTAACCGCCCGGAGCAGGCTGCCCGTGTGTTCGCCGTGCttt > 1:20869848/1‑67 (MQ=255) ccGCTCAACGGTTTTCAGGGGCAGCCTAACCGCCCGGAGCAGGCTGCCCGTGTGTTCGCCGTGCttt > 1:27695393/1‑67 (MQ=255) ccGCTCAACGGTTTTCAGGGGCAGCCTAACCGCCCGGAGCAGGCTGCCCGTGTGTTCGCCGTGCttt > 1:26991097/1‑67 (MQ=255) ccGCTCAACGGTTTTCAGGGGAAGCCTgctccggggggtttgggtgccccggaagaccgttgagcggc > 1:29185818‑M1/1‑27 (MQ=255) gCTCAACGGTTTTCAGGGGCAGCCTAACCGCCCGGAGCAGGCTGCCCGTGTGTTCGCCGTGCTTTGCg > 1:20383242/1‑68 (MQ=255) cGGTTTTCAGGGGCAGCCTAACCGCCCGGAGCAGGCTGCCCGTGTGTTCGCCGTGCTTTGCGAGTTgc < 1:3326101/68‑1 (MQ=255) cGGTTTTCAGGGGCAGCCTAACCGCCCGGAGCAGGCTGCCCGTGTGTTCGCCGTGCTTTGCGAGTTgc < 1:4349510/68‑1 (MQ=255) ggTTTTCAGGGGCAGCCTAACCGCCCGGAGCAGGCTGCCCGTGTGTTCGCCGTGCTTTGCGAGTTgc > 1:22416663/1‑67 (MQ=255) gTTTTCAGGGGCAGCCTAACCGCCCGGAGCAGGCTGCCCGTGTGTTCGCCGTGCTTTGCGAGTTgcg > 1:27343149/1‑67 (MQ=255) tttCAGGGGCAGCCTAACCGCCCGGAGCAGGCTGCCCGTGTGTTCGCCGTGCTTTGCGAGTTGCGCCg > 1:17904024/1‑68 (MQ=255) tCAGGGGCAGCCTAACCGCCCGGAGCAGGCTGCCCGTGTGTTCGCCGTGCTTTGCGAGTTGCGCCggg > 1:29654289/1‑68 (MQ=255) cAGGGGCAGCCAAACCGCCCGGAGCAGGCTGCCCGGGTGTTCGCCGTGCTTTGCGAGTTGCGCCGGGa < 1:9220588/68‑1 (MQ=255) acgggCAGCCTAACCGCCCGGAGCAGGCTGCCCGTGTGTTCGCCGTGCTTTGCGAGTTGCGCCGGGa > 1:30108074/3‑67 (MQ=255) ggggCAGCCTgctccgggcggttaggctgcccctgaaacgcgttgagcggcatatccggcgcgtcggt > 1:20760791‑M1/1‑10 (MQ=255) ggggCAGCCTAACCGCCCGGAGCAGGCTGCCCGTGTGTTCGCCGTGCTTTGCGAGTTGCGCCGGGaa > 1:18679002/1‑67 (MQ=255) ggggCAGCCTAACCGCCCGGAGCAGGCTGCCCGTGTGTTCGCCGTGCTTTGCGAGTTGCGCCGGGaa > 1:23811343/1‑67 (MQ=255) ggCAGCCTgctccgggcggttaggctgcccctgaaaaccgttgagcggcatatccggcgcgtcggtt > 1:25222709‑M1/1‑8 (MQ=255) ggCAGCCTAACCGCCCGGAGCAGGCTGCCCGTGTGTTCGCCGTGCTTTGCGAGTTGCGCCGGGAACcg > 1:12195606/1‑68 (MQ=255) ggCAGCCTAACCGCCCGGAGCAGGCTGCCCGTGTGTTCGCCGTGCTTTGCGAGTTGCGCCGGGAACcg > 1:13582087/1‑68 (MQ=255) ggCAGCCTAACCGCCCGGAGCAGGCTGCCCGTGTGTTCGCCGTGCTTTGCGAGTTGCGCCGGGAACcg > 1:26499879/1‑68 (MQ=255) ggCAGCCTAACCGCCCGGAGCAGGCTGCCCGTGTGTTCGCCGTGCTTTGCGAGTTGCGCCGGGAACcg > 1:6623652/1‑68 (MQ=255) ggCAGCCTAACCGCCCGGAGCAGGCTGCCCGTGTGTTCGCCGTGCTTTGCGAGTTGCGCCGGGAACcg > 1:19843167/1‑68 (MQ=255) ggCAGCCTAACCGCCCGGAGCAGGCTGCCCGTGTGTTCGCCGTGCTTTGCGAGTTGCGCCGGGAACcg > 1:27838897/1‑68 (MQ=255) ggCAGCCTAACCGCCCGGAGCAGGCTGCCCGTGTGTTCGCCGTGCTTTGCGAGTTGCGCCGGGAACcg > 1:21480234/1‑68 (MQ=255) gCAGCCTgctccgggcggttaggctgcccctgaaaaccgttgagcggcatatccggcgcgtcggttt > 1:19176334‑M1/1‑7 (MQ=255) gCAGCCTgctccgggcggttaggctgcccctgaaaaccgttgagcggcatatccggcgcgtcggttt > 1:8516451‑M1/1‑7 (MQ=255) gCAGCCTgctccgggcggttaggctgcccctgaaaaccgttgagcggcatatc > 1:21244016‑M1/1‑7 (MQ=255) gCAGCCTgctccaggcggttaggctgccactgaaaaccgttgagcggcatatcaggcgcgtcggttt > 1:28915306‑M1/1‑7 (MQ=255) gCAGCCTAACCGCCCGGAGCAGGCTGCCCGTGTGTTCGCCGTGCTTTGCGAGTTGCGCCGGGAACcg < 1:20551777/67‑1 (MQ=255) gCAGCCTAACCGCCCGGAGCAGGCTGCCCGTGTGTTCGCCGTGCTTTGCGAGTTGCGCCGGGAACcg > 1:1895838/1‑67 (MQ=255) gCAGCCTAACCGCCCGGAGCAGGCTGCCCGTGTGTTCGCCGTGCTTTGCGAGTTGCGCCGGGAACcg > 1:28452416/1‑67 (MQ=255) aGCCTgctccgggcggttaggctgcccctgaaaaccgttgagcggcatatccggcgcgtcggtttcca > 1:5715783‑M1/1‑5 (MQ=255) aGCCTgctccgggcggttaggctgcccctgaaaaccgttgagcggcatatccggcgcgtcggtttcca > 1:23318449‑M1/1‑5 (MQ=255) aGCCTAACCGCCCGGAGCAGGCTGCCCGTGTGTTCGCCGTGCTTTGCGAGTTGCGCCGGGAACcggcg > 1:24313268/1‑68 (MQ=255) ccTgctccgggcggttaggctgcccctgaaaaccgttgagcggcatatccggcgcgtcggtttccagc > 1:4442481‑M1/1‑3 (MQ=255) cTgctccgggcggttaggcttcccctgaaaaccgttgagcggcatatccggcgcgtcggtttccag < 1:12508966‑M1/66‑65 (MQ=255) cTgctccgggcggttaggctgcccctgaaaaccgttgagcggcatatccggcgcgtcggtttccagc < 1:31293670‑M1/67‑66 (MQ=255) cTgctccgggcggttaggctgcccctgaaaaccgttgagcggcatatccggcgcgtcggtttccagc < 1:17401426‑M1/67‑66 (MQ=255) cTgctccgggcggttaggctgcccctgaaaaccgttgagcggcatatccggcgcgtcggtttccag < 1:1246374‑M1/66‑65 (MQ=255) cTgctccgggcggttaggctgcccctgaaaaccgttgagcggcatatccggcgcgtcggtttcca < 1:4747577‑M1/65‑64 (MQ=255) cTgctccgggcggttaggctgcccctgaaaaccgttgagcggcatatccggcgcgtcggtttcca < 1:24625640‑M1/65‑64 (MQ=255) cTgctccgggcggttaggctgcccctgaaaaccgttgagcggcatatcaggcgcgtcggtttcca < 1:13323489‑M1/65‑64 (MQ=255) cTAACCGCCCGGAGCAGGCTGCCCGTGTGTTCGCCGTGCTTTGCGAGTTGCGCCGGGAACcggcgg < 1:18139521/66‑1 (MQ=255) cTAACCGCCCGGAGCAGGCTGCCCGTGTGTTCGCCGTGCTTTGCGAGTTGCGCCGGGAACcggcgg < 1:1105904/66‑1 (MQ=255) cTAACCGCCCGGAGCAGGCTGCCCGTGTGTTCGCCGTGCTTTGCGAGTTGCGCCGGGAACcggcgg < 1:1446048/66‑1 (MQ=255) cTAACCGCCCGGAGCAGGCTGCCCGTGTGTTCGCCGTGCTTTGCGAGTTGCGCCGGGAACcggcgg < 1:28159806/66‑1 (MQ=255) cTAACCGCCCGGAGCAGGCTGCCCGTGTGTTCGCCGTGCTTTGCGAGTTGCGCCGGGAACCGGCGGAt > 1:16599519/1‑68 (MQ=255) | CGCTGGCATCGTTATTGCTGGAAACCGACGCGCCGGATATGCCGCTCAACGGTTTTCAGGGGCAGCCTAACCGCCCGGAGCAGGCTGCCCGTGTGTTCGCCGTGCTTTGCGAGTTGCGCCGGGAACCGGCGGATG > CP009273/4603890‑4604024 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |