New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 108768 =280 (0.730)22 (0.060) 7/100 NT 8.4% coding (319/744 nt) zapD FtsZ stabilizer
?CP009273 108799 = 228 (0.660)coding (288/744 nt) zapD FtsZ stabilizer

Only 100 of 397 total aligned reads displayed.

CTGGGATGCTCAGTCGCTGACGCACCAGAGCAATCAAACGATCTTCACGCAGAAATTGCCCGATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAACTGCTGAATTAATGCTTCAATACGGCTCTGG  >  CP009273/108702‑108835
                                                                  |                                                                   
cagacctggattggcgtgcctggcgtggaccagagccgtattgaagcattaattcagcagttaaaagc                                                                    >  1:24295824‑M1/67‑68 (MQ=255)
cagacctggattggcgtgcctggcgtggaccagagccgtattgaagcattaattcagcagtaaaaagc                                                                    >  1:5922572‑M1/67‑68 (MQ=255)
cTGGGATGCTCAGTCGCTGACGCACCAGAGCAATCAAACGATCTTCACGCAGAAATTGCCCGATAcgc                                                                    >  1:29120213/1‑68 (MQ=255)
 agacctggattggcgtgcctggcgtggaccagagccgtattgaagcattaattcagcagttaaaagcg                                                                   <  1:3387051‑M1/3‑1 (MQ=255)
  gggATGCTCAGTCGCTGACGCACCAGAGCAATCAAACGATCTTCACGCAGAAATTGCCCGATAcgcg                                                                   >  1:19548123/1‑67 (MQ=255)
    gATGCTCAGGCGCTGACGCACCAGAGCAATCAAACGATCTTCACGCAGAAATTGCCCGATAcgcggc                                                                 <  1:21382394/67‑1 (MQ=255)
    cctggattggcgtgcctggcgtggaccagagccgtattgaagcattaattcagcagttaaaagcggcg                                                                <  1:15916289‑M1/6‑1 (MQ=255)
    cctggattggcgtgcctggcgtggaccagagccgtattgaagcattaattcagcagttaaaagcggcg                                                                <  1:5101963‑M1/6‑1 (MQ=255)
    cctggattggcgtgcctggcgtggaccagagccgtattgaagcattaattcagcagttaaaagcggcg                                                                <  1:20393940‑M1/6‑1 (MQ=255)
    cctggattggcgtgcctggcgtggaccagagccgtattgaagcattaattcagcagttaaaagcggc                                                                 >  1:3903534‑M1/63‑67 (MQ=255)
     aTGCTCAGTCGCTGACGCACCAGAGCAATCAAACGATCTTCACGCAGAAATTGCCCGATAcgcggcgc                                                               >  1:24438972/1‑68 (MQ=255)
     aTGCTCAGTCGCTGACGCACCAGAGCAATCAAACGATCTTCACGCAGAAATTGCCCGATAcgcggcgc                                                               >  1:15210698/1‑68 (MQ=255)
         tCAGTCGCTGACGCACCAGAGCAATCAAACGATCTTCACGCAGAAATTGCCCGATACGCGGCGCGGaa                                                           >  1:27390775/1‑68 (MQ=255)
         tCAGTCGCTGACGCACCAGAGCAATCAAACGATCTTCACGCAGAAATTGCCCGATACGCGGCGCGGaa                                                           >  1:18166581/1‑68 (MQ=255)
         tCAGTCGCTGACGCACCAGAGCAATCAAACGATCTTCACGCAGAAATTGCCCGATACGCGGCGCGGaa                                                           >  1:30965730/1‑68 (MQ=255)
         tCAGTCGCTGACGCACCAGAGCAATCAAACGATCTTCACGCAGAAATTGCCCGATACGCGGCGCGGaa                                                           >  1:20044905/1‑68 (MQ=255)
         tCAGTCGCTGACGCACCAGAGCAATCAAACGATCTTCACGCAGAAATTGCCCGATACGCGGCGCGGaa                                                           <  1:23909050/68‑1 (MQ=255)
         tCAGTCGCTGACGCACCAGAGCAATCAAACGATCTTCACGCAGAAATTGCCCGATACGCGGCGCGGa                                                            <  1:12748259/67‑1 (MQ=255)
         tCAGTCGCTGACGCACCAGAGCAATCAAACGATCTTCACGCAGAAATTGCCCGATACGCGGCGCGGa                                                            <  1:21756468/67‑1 (MQ=255)
         tCAGTCGCTGACGCACCAGAGCAATCAAACGATCTTCACGCAGAAATTGCCCGATACGCGGCGCGGa                                                            <  1:29949368/67‑1 (MQ=255)
          cAGTCGCTGACGCACCAGAGCAATCAAACGATCTTCACGCAGAAATTGCCCGATACGCGGCGCGGaaa                                                          <  1:11292808/68‑1 (MQ=255)
          cAGTCGCTGACGCACCAGAGCAATCAAACGATCTTCACGCAGAAATTGCCCGATACGCGGCGCGGaaa                                                          <  1:22558004/68‑1 (MQ=255)
          cAGTCGCTGACGCACCAGAGCAATCAAACGATCTTCACGCAGAAATTGCCCGATACGCGGCGCGGaaa                                                          <  1:30804496/68‑1 (MQ=255)
          cAGTCGCTGACGCACCAGAGCAATCAAACGATCTTCACGCAGAAATTGCCCGATACGCGGCGCGGaaa                                                          <  1:10517932/68‑1 (MQ=255)
          cAGTCGCTGACGCACCAGAGCAATCAAACGATCTTCACGCAGAAATTGCCCGATACGCGGCGCGGaaa                                                          <  1:10324954/68‑1 (MQ=255)
            gTCGCTGACGCACCAGAGCAATCAAACGATCTTCACGCAGAAATTGCCCGATACGCGGCGCGGAAAtt                                                        >  1:26777703/1‑68 (MQ=255)
            gTCGCTGACGCACCAGAGCAATCAAACGATCTTCACGCAGAAATTGCCCGATACGCGGCGCGGAAAtt                                                        >  1:29262956/1‑68 (MQ=255)
              cGCTGACGCACCAGAGCAATCAAACGATCTTCACGCAGAAATTGCCCGATACGCGGCGCGGAAAtt                                                        <  1:2068069/66‑1 (MQ=255)
              cGCTGACGCACCAGAGCAATCAAACGATCTTCACGCAGAAATTGCCCGATACGCGGCGCGGAAATTaa                                                      >  1:28675621/1‑68 (MQ=255)
              cGCTGACGCACCAGAGCAATCAAACGATCTTCACGCAGAAATTGCCCGATACGCGGCGCGGAAATTaa                                                      <  1:12469990/68‑1 (MQ=255)
               gCTGACGCCCCAGAGCAATCAAACGATCTTCACGCAGAAATTGCCCGATACGCGGCGCGGAAATTAAt                                                     >  1:6042103/1‑68 (MQ=255)
                   aCGCACCAGAGCAATCAAACGATCTTCACGCAGAAATTGCCCGATACGCGGCGCGGAAATTAATAc                                                   >  1:14296481/1‑66 (MQ=255)
                       aCCAGAGCAATCAAACGATCTTCACGCAGAAATTGCCCGATACGCGGCGCGGAAATTAATACGCTcc                                              >  1:18650118/1‑67 (MQ=255)
                       aCCAGAGCAATCAAACGATCTTCACGCAGAAATTGCCCGATACGCGGCGCGGAAATTAATACGCTcc                                              <  1:19287060/67‑1 (MQ=255)
                          agagCAATCAAACGATCTTCACGCAGAAATTGCCCGATACGCGGCGCGGAAATTAATACGCTCCccg                                           >  1:5285489/1‑67 (MQ=255)
                             gCAATCAAACGATCTTCACGCAGAAATTGCCCGATACGCGGCGCGGAAATTAATACGCTCCccgccga                                       >  1:15401980/1‑67 (MQ=255)
                             gCAATCAAACGATCTTCACGCAGAAATTGCCCGATACGCGGCGCGGAAATTAATACGCTCCccgcc                                         >  1:31206660/1‑66 (MQ=255)
                             gCAATCAAACGATCTTCACGCAGAAATTGCCCGATACGCGGCGCGGAAATTAATACGCTCCccgcc                                         >  1:22223843/1‑66 (MQ=255)
                             gCAATCAAACGATCTTCACGCAGAAATTGCCCGATACGCGGCGCGGAAATTAATACGCTCCccgcc                                         >  1:6825417/1‑66 (MQ=255)
                             gCAATCAAACGATCTTCACGCAGAAATTGCCCGATACGCGGCGCGGAAATTAATACGCTCCccgcc                                         >  1:28065877/1‑66 (MQ=255)
                             gCAATCAAACGATCTTCACGCAGAAATTGCCCGATACGCGGCGCGGAAATTAATACGCTCCccgcc                                         >  1:2589093/1‑66 (MQ=255)
                               aaTCAAACGATCTTCACGCAGAAATTGCCCGATACGCGGCGCGGAAATTAATACGCTCCCcgccgc                                       <  1:1604042/66‑1 (MQ=255)
                               aaTCAAACGATCTTCACGCAGAAATTGCCCGATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCtt                                     >  1:108044/1‑68 (MQ=255)
                               aaTCAAACGATCTTCACGCAGAAATTGCCCGATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCtt                                     >  1:23564337/1‑68 (MQ=255)
                               aaTCAAACGATCTTCACGCAGAAATTGCCCGATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCt                                      <  1:19779452/67‑1 (MQ=255)
                               aaTCAAACGATCTTCACGCAGAAATTGCCCGATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCt                                      <  1:18464284/67‑1 (MQ=255)
                                 tCAAACGATCTTCACGCAGAAATTGCCCGATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCtttt                                   >  1:967173/1‑68 (MQ=255)
                                  gccgtattgaagcattaattcagcagttaaaaGCGGCGCGGGAATTAATACGCTCCCCGCCCCTTTTa                                  <  1:28430823‑M1/36‑1 (MQ=255)
                                  cAAACGATCTTCACGCAGAAATTGCCCGATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTa                                  >  1:11152347/1‑68 (MQ=255)
                                  cAAACGATCTTCACGCAGAAATTGCCCGATACGCGGCGCGGAAATTAATACGCTACACGCCGCTTTTa                                  >  1:4155499/1‑68 (MQ=255)
                                  cAAAAGATCTTCACGCAGAAATTGCCCGATACGCGGCGCGCAAATTAATACGCTCCCCGCCGCTTTTa                                  >  1:29590581/1‑68 (MQ=255)
                                     aCGATCTTCACGCAGAAATTGCCCGATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAAct                               <  1:12196825/68‑1 (MQ=255)
                                     aCGATCTTCACGCAGAAATTGCCCGATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAAct                               <  1:3725069/68‑1 (MQ=255)
                                     aCGATCTTCACGCAGAAATTGCCCGATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAAct                               <  1:21901217/68‑1 (MQ=255)
                                     aCGATCTTCACGCAGAAATTGCCCGATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAAct                               <  1:7958796/68‑1 (MQ=255)
                                       gATCTTCACGCAGAAATTGCCCGATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAActgc                             >  1:27079039/1‑68 (MQ=255)
                                       gATCTTCACGCAGAAATTGCCCGATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAAct                               >  1:25218741/1‑66 (MQ=255)
                                       gATCTTCACGCAGAAATTGCCCGATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAAct                               >  1:25607332/1‑66 (MQ=255)
                                       gATCTTCACGCAGAAATTGCCCGATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAAct                               >  1:23367948/1‑66 (MQ=255)
                                          cTTCACGCAGAAATTGCCCGATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAACTGCTGa                          <  1:30539032/68‑1 (MQ=255)
                                          cTTCACGCAGAAATTGCCCGATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAACTGCTGa                          <  1:18751477/68‑1 (MQ=255)
                                          cTTCACGCAGAAATTGCCCGATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAACTGCTGa                          <  1:28851614/68‑1 (MQ=255)
                                           ttCACGCAGAAATTGCCCGATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAACTGCTGaa                         <  1:6425605/68‑1 (MQ=255)
                                           ttCACGCAGAAATTGCCCGATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAACTGCTGaa                         >  1:24887516/1‑68 (MQ=255)
                                            tCACGCAGAAATTGCCCGATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAACTGCTGAAt                        <  1:26615575/68‑1 (MQ=255)
                                            agcattaattcagcagttaaaaGCGGCGCGGAAATTAGTACGCGCCCCGCCGCTGGTAACTGCTGAAt                        <  1:27639567‑M1/46‑1 (MQ=255)
                                            agcattaattcagcagttaaaaGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAACTGCGGAAt                        <  1:6214540‑M1/46‑1 (MQ=255)
                                               cGCAGAAATTGCCCGATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAACTGCTGAATTaa                     >  1:7141903/1‑68 (MQ=255)
                                               cGCAGAAATTGCCCGATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAACTGCTGAATTaa                     >  1:23145346/1‑68 (MQ=255)
                                               cGCAGAAATTGCCCGATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAACTGCTGAATTaa                     >  1:5449006/1‑68 (MQ=255)
                                                gCAGAAATTGCCCGATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAACTGCTGAATTAAt                    >  1:8901524/1‑68 (MQ=255)
                                                    ttcagcagttaaaaGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAACTGCTGAATTAATGCt                 <  1:4609626‑M1/53‑1 (MQ=255)
                                                     aaTTGCCCGATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAACTGCTGAATTAATGCt                 <  1:17054711/66‑1 (MQ=255)
                                                     aaTTGCCCGATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAACTGCTGAATTAATGCt                 <  1:9330075/66‑1 (MQ=255)
                                                     aaTTGCCCGATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAACTGCTGAATTAATGCt                 <  1:13188587/66‑1 (MQ=255)
                                                     aaTTGCCCGATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAACTGCTGAATTAATGCt                 <  1:13598369/66‑1 (MQ=255)
                                                     aaTTGCCCGATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAACTGCTGAATTAATGCt                 <  1:8161561/66‑1 (MQ=255)
                                                     aaTTGCCCGATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAACTGCTGAATTAATGCt                 <  1:7733364/66‑1 (MQ=255)
                                                     aaTTGCCCGATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAACTGCTGAATTAATGCt                 <  1:14718482/66‑1 (MQ=255)
                                                     aaTTGCCCGATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAACTGCTGAATTAATGCt                 <  1:17163213/66‑1 (MQ=255)
                                                     aaTTGCCCGATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAACTGCTGAATTAATGCt                 <  1:16732567/66‑1 (MQ=255)
                                                        gcagttaaaaGCGGCGCGGATATTAATACGCTCCCCGCCGCGTTTAACTGCGGAATTAATGCTTCAAt            <  1:24084329‑M1/58‑1 (MQ=255)
                                                        gcagttaaaaGCGGCGCGGAAATTAATACGCTCCCCGCCGCGTTTAACTGCTGAATTAATGCTTCAAt            <  1:4335353‑M1/58‑1 (MQ=255)
                                                          cccGATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAACTGCTGAATTAATGCTTCAATAc          >  1:17805378/1‑68 (MQ=255)
                                                          cccGATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAACTGCTGAATTAATGCTTCAATAc          >  1:26291045/1‑68 (MQ=255)
                                                          cccGATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAACTGCTGAATTAATGCTTCAATAc          >  1:18894217/1‑68 (MQ=255)
                                                          agttaaaaGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAACTGCTGAATTAATGCTTCAATAc          <  1:16292822‑M1/60‑1 (MQ=255)
                                                             gATACGCTGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAACTGCTGAATTAATGCTTCAATACGGc       <  1:1575483/68‑1 (MQ=255)
                                                             gATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAACTGCTGAATTAATGCTTCAATACGGc       <  1:11454063/68‑1 (MQ=255)
                                                             gATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAACTGCTGAATTAATGCTTCAATACGGc       <  1:11687882/68‑1 (MQ=255)
                                                             gATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAACTGCTGAATTAATGCTTCAATACGGc       <  1:31966102/68‑1 (MQ=255)
                                                             gATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAACTGCTGAATTAATGCTTCAATACGGc       <  1:7510363/68‑1 (MQ=255)
                                                             gATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAACTGCTGAATTAATGCTTCAATACGGc       <  1:17656285/68‑1 (MQ=255)
                                                             gATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAACTGCTGAATTAATGCTTCAATACGGc       <  1:19156262/68‑1 (MQ=255)
                                                             gATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAACTGCTGAATTAATGCTTCAATACGGc       <  1:20726869/68‑1 (MQ=255)
                                                             gATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAACTGCTGAATTAATGCTTCAATACGGc       <  1:9572306/68‑1 (MQ=255)
                                                               tACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAACTGCTGAATTAATGCTTCAATACGGct      <  1:10132905/67‑1 (MQ=255)
                                                                 cgcggcgcggAAATTAATACGCTCCCCGCCGCTTTTACCTGCTGAATTAATGCTTCAATACGGCTCTg   >  1:17374742/1‑68 (MQ=255)
                                                                  GCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAACTGCTGAATTAATGCTTCAATACGGCTCTgg  >  1:14485617‑M1/1‑68 (MQ=255)
                                                                  GCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAACTGCTGAATTAATGCTTCAATACGGCTCTgg  >  1:31304780‑M1/1‑68 (MQ=255)
                                                                  |                                                                   
CTGGGATGCTCAGTCGCTGACGCACCAGAGCAATCAAACGATCTTCACGCAGAAATTGCCCGATACGCGGCGCGGAAATTAATACGCTCCCCGCCGCTTTTAACTGCTGAATTAATGCTTCAATACGGCTCTGG  >  CP009273/108702‑108835

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.