| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 596500 | 172 (0.450) | 9 (0.030) | 5/94 | NT | 6.1% | coding (2331/3144 nt) | cusA | copper/silver efflux system, membrane component |
| ? | CP009273 | = 596517 | 135 (0.420) | coding (2348/3144 nt) | cusA | copper/silver efflux system, membrane component | |||||
Only 100 of 296 total aligned reads displayed.
TGGTTGGCGAAACGGTGGAAGGGATTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCAAATCACCCTGGCA > CP009273/596433‑596566 | ggTTGGCGAAACGGTGGAAGGGATTGCCCGTTATCCAATTAATCTGGGTTATCCGCAAAGCTGGcgcg > 1:21594884/1‑68 (MQ=255) ggTTGGCGAAACGGTGGAAGGGATTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGcgcg > 1:2322015/1‑68 (MQ=255) ggTTGGCGAAACGGTGGAAGGGATTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGcgcg < 1:26976538/68‑1 (MQ=255) ggTTGGCGAAACGGTGGAAGGGATTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGcgcg > 1:14026727/1‑68 (MQ=255) ttGGCGAAACGGTGGAAGGGATTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGAt > 1:14672414/1‑68 (MQ=255) tGGCGAAACGGTGGAAGGGATTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGAt < 1:19817833/67‑1 (MQ=255) gCGAAACGGTGGAAGGGATTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGATAg > 1:19343577/1‑67 (MQ=255) cGAAACGGTGGAAGGGATTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGt < 1:4499390/67‑1 (MQ=255) cGAAACGGTGGAAGGGATTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGt < 1:14631282/67‑1 (MQ=255) gAAACGGTGGAAGGGATTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTc < 1:19892938/67‑1 (MQ=255) gAAACGGTGGAAGGGATTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTc < 1:11379171/67‑1 (MQ=255) gAAACGGTGGAAGGGATTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTc < 1:20979716/67‑1 (MQ=255) gAAACGGTGGAAGGGATTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTc < 1:12773475/67‑1 (MQ=255) aaCGGTGGAAGGGATTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCg < 1:8443302/67‑1 (MQ=255) aaCGGTGGAAGGGATTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCg < 1:2407667/67‑1 (MQ=255) aaCGGTGGAAGGGATTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCg < 1:25378058/67‑1 (MQ=255) aaCGGTGGAAGGGATTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCg < 1:29460147/67‑1 (MQ=255) aaCGGTGGAAGGGATTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCg < 1:31136984/67‑1 (MQ=255) aaCGGTGGAAGGGATTGCCCGTTATCCAATTAATCTGCGGTATCCGCAAAGCTGGCGCGATAGTCCg < 1:26323791/67‑1 (MQ=255) ggTGGAAGGGATTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAgg < 1:13143876/68‑1 (MQ=255) ggTGGAAGGGATTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAgg < 1:15595983/68‑1 (MQ=255) ggTGGAAGGGATTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAg > 1:31978938/1‑67 (MQ=255) tGGAAGGGATTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGc < 1:11855682/67‑1 (MQ=255) ggAAGGGATTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGc > 1:25836999/1‑66 (MQ=255) ggAAGGGATTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGc > 1:30186569/1‑66 (MQ=255) ggAAGGGATTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCa < 1:20309222/67‑1 (MQ=255) ggAAGGGATTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCa < 1:1858842/67‑1 (MQ=255) aaGGGATTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACt > 1:27474474/1‑67 (MQ=255) aaGGGATTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACt > 1:29714237/1‑67 (MQ=255) aaGGGATTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACt > 1:10327004/1‑67 (MQ=255) aGGGATTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTgc > 1:12387960‑M2/1‑66 (MQ=255) ggATTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTgcg < 1:27838962‑M2/67‑4 (MQ=255) ggATTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTgcg < 1:17391713‑M2/67‑4 (MQ=255) ggATTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTgcg < 1:10572404‑M2/67‑4 (MQ=255) ggATTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTgcg < 1:24814326‑M2/67‑4 (MQ=255) ggATTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTgcg < 1:5370435‑M2/67‑4 (MQ=255) ggATTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTgcg < 1:7475020‑M2/67‑4 (MQ=255) ggATTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTgcg < 1:6867422‑M2/67‑4 (MQ=255) ggATTGCCCGTTATCCAATTAATATGCGTTATCCGCAAAGCTGGCGCagtgcctgcgggctatcggg > 1:1028691‑M1/1‑47 (MQ=255) ggATTGCCCGTTAACCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTgcg < 1:23163030‑M2/67‑4 (MQ=255) gATTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTgcgcc < 1:13395754‑M2/68‑6 (MQ=255) gATTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTgcgc > 1:8859415‑M2/1‑63 (MQ=255) gATTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTgcgc > 1:14943086‑M2/1‑63 (MQ=255) gATTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTgcg > 1:1126661‑M2/1‑63 (MQ=255) gATTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTgcg > 1:15989677‑M2/1‑63 (MQ=255) aTTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTgcgcca < 1:19437979‑M2/68‑7 (MQ=255) aTTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTgcgcca < 1:16854228‑M2/68‑7 (MQ=255) gCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTgcgccagct > 1:8103506‑M2/1‑59 (MQ=255) ccGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTg > 1:24090707/1‑67 (MQ=255) cGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGcc > 1:14338156/1‑68 (MQ=255) tATCCAATTAATCTGCGTTATCCGCAACGCGGGCGCGATAGTCCGCAGGCACTgcgccagctttgcgg > 1:20163483‑M2/1‑53 (MQ=255) tATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGa < 1:21867438/67‑1 (MQ=255) tATCCAATTAATCTGCGTTAGCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTgcgccagctttgcgg > 1:13817169‑M2/1‑53 (MQ=255) aTCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGAt > 1:7414843/1‑67 (MQ=255) tCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGAt > 1:12085044/1‑66 (MQ=255) tCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGAt > 1:25469029/1‑66 (MQ=255) aTTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGAc > 1:26389622/1‑68 (MQ=255) tAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGCTCCTGCCg > 1:4437841/1‑67 (MQ=255) tAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGCTCCTGACg > 1:3411380/1‑67 (MQ=255) tAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACg > 1:18192883/1‑67 (MQ=255) tAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACg > 1:31740172/1‑67 (MQ=255) aaTCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGcc > 1:21341991/1‑68 (MQ=255) aTCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCg < 1:29111838/68‑1 (MQ=255) tCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGa > 1:4190930/1‑68 (MQ=255) gTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGaa > 1:22444468/1‑67 (MQ=255) gTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGaa > 1:29802783/1‑67 (MQ=255) gTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGaa > 1:28641462/1‑67 (MQ=255) tATCCGCAAAGCTGGCGCGATAGTCCGCAGGCGCTGCGCCAGCTGCCGATCCTGACGCCGATGAagca < 1:29607020/68‑1 (MQ=255) aTCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCGGACGCCGATGAagca > 1:23871651/1‑67 (MQ=255) tCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAagcagc < 1:7861284/68‑1 (MQ=255) ccGCAAAGCTGGCGCagtgcctgcggactatcgcgccagctttgcggataacgcagatttattggata > 1:23710543‑M1/1‑15 (MQ=255) ccGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAgcagca > 1:10875447/1‑68 (MQ=255) ccGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAgcagca < 1:26135535/68‑1 (MQ=255) ccGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAgcagca < 1:17882332/68‑1 (MQ=255) ccGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCCGACGCCGATGAAgcagca > 1:28235758/1‑68 (MQ=255) cGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCaa < 1:7299561/68‑1 (MQ=255) cGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCaa < 1:5150902/68‑1 (MQ=255) aaGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGTAGCAGCAAATc > 1:14180581/1‑67 (MQ=255) aaGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCAAATc > 1:20587840/1‑67 (MQ=255) aaGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCAAATc > 1:13241432/1‑67 (MQ=255) aaGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCAAATc > 1:4851999/1‑67 (MQ=255) aaGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCAAATCa < 1:9260487/68‑1 (MQ=255) aGCTGGCGCagtgcctgcggactatcgcgccagctttgcggataacgcagattaattggataacgggc > 1:8030842‑M1/1‑9 (MQ=255) aGCTGGCGCagtgcctgcggactatcgcgccagctttgcggataacgcagattaattggataacgggc > 1:9087886‑M1/1‑9 (MQ=255) aGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCAAATCAc < 1:17679151/68‑1 (MQ=255) gCTGGCGCagtgcctgcggactatcgcgccagctttgcggataacgcagattaattggataacgggca > 1:4321934‑M1/1‑8 (MQ=255) gCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCAAATCAc > 1:27219487/1‑67 (MQ=255) gCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCAAATCAc > 1:28598213/1‑67 (MQ=255) tGGCGCagtgcctgcggactatcgcgccagctttgcggataacgcagattaattggataacgggcaat < 1:9589259‑M1/68‑63 (MQ=255) tGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCAAATCAcc < 1:22810146/66‑1 (MQ=255) ggCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCAAATCACCCTg < 1:26721372/68‑1 (MQ=255) ggCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCAAATCACCCTg < 1:5777771/68‑1 (MQ=255) ggCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCAAATCACCCTg < 1:16624889/68‑1 (MQ=255) cgcagtgcctgcggactatcgcgccagctttgcggataacgcagattaattggataacgggcaatcc < 1:17870987‑M1/67‑65 (MQ=255) cgcagtgcctgcggactatcgcgccagctttgcggataacgcagattaattggataacgggcaatcc < 1:30682983‑M1/67‑65 (MQ=255) cgcagtgcctgcggactatcgcgccagctttgcggataacgcagattaattggataacgggcaatcc < 1:24531504‑M1/67‑65 (MQ=255) gcgATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCAAATCAGCCTGGCa > 1:12183859/1‑68 (MQ=255) gcagtgcctgcggactatcgcgccagctttgcggataacgcagattaattggataacgggcactccct > 1:17357176‑M1/1‑2 (MQ=255) gcagtgcctgcggactatcgcgccagctttgcggataacgcagattaattggaaaacgggcaatccct < 1:15060086‑M1/68‑67 (MQ=255) cagtgcctgcggactatcgcgccagctttgcggataacgcagattaattggataacgggcaatccct > 1:9612308‑M1/1‑1 (MQ=255) | TGGTTGGCGAAACGGTGGAAGGGATTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCAAATCACCCTGGCA > CP009273/596433‑596566 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |