| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 596500 | 172 (0.450) | 9 (0.030) | 5/94 | NT | 6.1% | coding (2331/3144 nt) | cusA | copper/silver efflux system, membrane component |
| ? | CP009273 | = 596517 | 135 (0.420) | coding (2348/3144 nt) | cusA | copper/silver efflux system, membrane component | |||||
Only 100 of 238 total aligned reads displayed.
AAGGGATTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCAAATCACCCTGGCAGACGTGGCCGACATT > CP009273/596451‑596581 | aaGGGATTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACt > 1:10327004/1‑67 (MQ=255)aaGGGATTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACt > 1:29714237/1‑67 (MQ=255)aaGGGATTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACt > 1:27474474/1‑67 (MQ=255)aaGGGATTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACt > 1:13166871/1‑67 (MQ=255) aGGGATTGCCCGTTTTCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTgc < 1:15060086‑M2/68‑3 (MQ=255) ggATTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTgcg < 1:7475020‑M2/67‑4 (MQ=255) ggATTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTgcg < 1:11331933‑M2/67‑4 (MQ=255) ggATTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTgcg < 1:26379248‑M2/67‑4 (MQ=255) ggATTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTgcg < 1:17391713‑M2/67‑4 (MQ=255) ggATTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTgcg < 1:6867422‑M2/67‑4 (MQ=255) ggATTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTgcg < 1:5370435‑M2/67‑4 (MQ=255) ggATTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTgcg < 1:19553981‑M2/67‑4 (MQ=255) ggATTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTgcg < 1:30682983‑M2/67‑4 (MQ=255) ggATTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTgcg < 1:27838962‑M2/67‑4 (MQ=255) gATTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTgcgc > 1:8859415‑M2/1‑63 (MQ=255) gATTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTgcg > 1:15989677‑M2/1‑63 (MQ=255) aTTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTgcgcca < 1:19437979‑M2/68‑7 (MQ=255) aTTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTgcgcca < 1:16854228‑M2/68‑7 (MQ=255) tGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTgcgccagc > 1:28616091‑M2/1‑60 (MQ=255) tGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTgcgccagc > 1:4321934‑M2/1‑60 (MQ=255) ccGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTg < 1:1438230/67‑1 (MQ=255) ccGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTg > 1:10395969/1‑67 (MQ=255) ccGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTg > 1:2654643/1‑67 (MQ=255) ccGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTg < 1:24183514/67‑1 (MQ=255) ccGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTg < 1:24863253/67‑1 (MQ=255) cGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGcc > 1:14338156/1‑68 (MQ=255) tATCCAATTAATCTGCGTTATCCGCAACGCGGGCGCGATAGTCCGCAGGCACTgcgccagctttgcgg > 1:20163483‑M2/1‑53 (MQ=255) tATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGa < 1:21867438/67‑1 (MQ=255) tATCCAATTAATCTGCGTTAGCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTgcgccagctttgcgg > 1:13817169‑M2/1‑53 (MQ=255) tATCCAATAAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTgcgccagctttgcgg > 1:23710543‑M2/1‑53 (MQ=255) aTCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGAt > 1:7414843/1‑67 (MQ=255) aTCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGAt > 1:5120230/1‑67 (MQ=255) aTCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATc < 1:12492466/68‑1 (MQ=255) tCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGAt > 1:12085044/1‑66 (MQ=255) aTTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGAc > 1:25453572/1‑68 (MQ=255) aTTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGAc > 1:9603549/1‑68 (MQ=255) aTTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGAc > 1:26752678/1‑68 (MQ=255) aTTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGAc > 1:20870413/1‑68 (MQ=255) tAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACg > 1:31777460/1‑67 (MQ=255) tAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACg > 1:31681272/1‑67 (MQ=255) tAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACg > 1:18192883/1‑67 (MQ=255) aaTCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGcc < 1:12907213/68‑1 (MQ=255) aTCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCg < 1:3024023/68‑1 (MQ=255) aTCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCg < 1:29111838/68‑1 (MQ=255) tCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGa > 1:4153373/1‑68 (MQ=255) gTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGCCGCCGATGaa > 1:8020191/1‑67 (MQ=255) gTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGaa > 1:21232305/1‑67 (MQ=255) gTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGaa > 1:2152187/1‑67 (MQ=255) gTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGaa > 1:32028207/1‑67 (MQ=255) gTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGaa > 1:29802783/1‑67 (MQ=255) gTAATCCGCAAAGCTGGCGCGATAGGCCGCAGGCACTgcgccagctttgcggataacgcagattaat > 1:4460564‑M2/1‑37 (MQ=255) tATCCGCAAAGCTGGCGCGATAGTCCGCAGGCGCTGCGCCAGCTGCCGATCCTGACGCCGATGAagca < 1:29607020/68‑1 (MQ=255) tATCCGCAAAGCTGGCCCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAagca < 1:23200928/68‑1 (MQ=255) aTCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCGGACGCCGATGAagca > 1:23871651/1‑67 (MQ=255) tCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAagcagc < 1:4242580/68‑1 (MQ=255) tCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAagcagc < 1:13555359/68‑1 (MQ=255) tCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAagcagc < 1:7861284/68‑1 (MQ=255) ccGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAgcagca > 1:25309034/1‑68 (MQ=255) ccGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAgcagca > 1:24076809/1‑68 (MQ=255) ccGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAgcagca < 1:13352241/68‑1 (MQ=255) ccGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAgcagca > 1:2873626/1‑68 (MQ=255) ccGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAgcagca < 1:26135535/68‑1 (MQ=255) ccGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAgcagca > 1:25543451/1‑68 (MQ=255) ccGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCCGACGCCGATGAAgcagca > 1:28235758/1‑68 (MQ=255) cGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCaa > 1:22916310/1‑68 (MQ=255) aaGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCAAATc > 1:14994294/1‑67 (MQ=255) aaGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCAAATc > 1:20587840/1‑67 (MQ=255) aaGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCAAATc > 1:17861306/1‑67 (MQ=255) aaGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCAAATc > 1:9444265/1‑67 (MQ=255) aaGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCAAATc > 1:4851999/1‑67 (MQ=255) aGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCAAATCAc < 1:9177825/68‑1 (MQ=255) aGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCAAATCAc < 1:3956463/68‑1 (MQ=255) aGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCAAATCAc < 1:7332931/68‑1 (MQ=255) aGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCAAATCAc < 1:17679151/68‑1 (MQ=255) gCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCAAATCAc > 1:27219487/1‑67 (MQ=255) gCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCAAATCAc > 1:10853404/1‑67 (MQ=255) tGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCAAATCAcc < 1:16378850/66‑1 (MQ=255) ggCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCAAATCACCCTg < 1:10880973/68‑1 (MQ=255) ggCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCAAATCACCCTg < 1:28342991/68‑1 (MQ=255) cgcgATAGTCCGCAGGCACGgcgccagctttgcgtataacgcatattaattggataacgggcaatcc > 1:17891825‑M2/1‑20 (MQ=255) cgcgATAGTCCGCAGCCACTgcgccagctttgcggataacgcagattaattggataacgggcaatcc > 1:573498‑M2/1‑20 (MQ=255) cccgatAGCCCGCAGGCACTgcgccagctttgcggataacgcatattaattggataacgggcaatcc > 1:1028691‑M2/3‑20 (MQ=255) gcgATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCAAATCAGCCTGGCa > 1:12183859/1‑68 (MQ=255) gATTGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCAAATCACCCTGGCAGa < 1:18486712/68‑1 (MQ=255) gATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCAAATCACCCTGGCAGa < 1:26782533/68‑1 (MQ=255) ccGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCAAATCACCCTGGCAGACGTGGc < 1:18993332/68‑1 (MQ=255) gCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCAAATCACCCTGGCAGACGTGGCCg > 1:6148914/1‑68 (MQ=255) aGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCAAATCACCCTGGCAGACGTGGCCGAc > 1:14066495/1‑68 (MQ=255) ggCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCAAATCACCCTGGGAGACGTGGCCGACa > 1:25755909/1‑68 (MQ=255) ggCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCAAATCACCCTGGCAGACGTGGCCGACa > 1:14559265/1‑68 (MQ=255) ggCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCAAATCACCCTGGCAGACGTGGCCGACa > 1:24659088/1‑68 (MQ=255) cACTGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCAAATCACCCTGGCAGACGTGGCCGAc < 1:7240973/65‑1 (MQ=255) cACTGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCAAATCACCCTGGCAGACGTGGCCGAc < 1:22402754/65‑1 (MQ=255) cACTGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCAAATCACCCTGGCAGACGTGGCCGAc < 1:15288719/65‑1 (MQ=255) cACTGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCAAATCACCCTGGCAGACGTGGCCGAc < 1:20371046/65‑1 (MQ=255) cACTGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCAAATCACCCTGGCAGACGTGGCCGAc < 1:17197694/65‑1 (MQ=255) cACTGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCAAATCACCCTGGCAGACGTGGCCGAc < 1:2280923/65‑1 (MQ=255) cACTGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCAAATCACCCTGGCAGACGTGGCCGAc < 1:4345738/65‑1 (MQ=255) cACTGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCAAATCACCCTGGCAGACGTGGCCGACAtt > 1:834334/1‑68 (MQ=255) cACTGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCAAATCACCCTGGCAGACGTGGCCGACAtt > 1:14117488/1‑68 (MQ=255) | AAGGGATTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCAAATCACCCTGGCAGACGTGGCCGACATT > CP009273/596451‑596581 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |