| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 691855 = | 282 (0.730) | 34 (0.100) +TAATG |
4/102 | NT | 9.9% | intergenic (+123/+31) | ubiF/glnX | 2‑octaprenyl‑3‑methyl‑6‑methoxy‑1,4‑benzoquinol oxygenase/tRNA‑Gln |
| ? | CP009273 | 691998 = | 398 (1.030) | noncoding (75/75 nt) | glnV | tRNA‑Gln | |||||
Only 100 of 389 total aligned reads displayed.
TCGCATCCGACATTGAAGGATAAGACGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGAGGATTCGAACCTCGGAATGCCGG > CP009273/691788‑691922 | agcggtaaggcaccggtttctgattccggcattccgaggttcgaatcctcgtaccccagccacattaa > 1:31342017‑M1/68‑68 (MQ=255)agcggtaaggcaccggattctgattccggcattccgaggttcgaatcctcgtaccccagccacattaa > 1:31949898‑M1/68‑68 (MQ=255) gcggtaaggcaccggattctgattccggcattccgaggttcgaatcctcgtaccccagccacattaaa < 1:24529366‑M1/2‑1 (MQ=255) gcggtaaggcaccggattctgattccggcattccgaggttcgaatcctcgtaccccagccacattaaa < 1:8288272‑M1/2‑1 (MQ=255) cGCATCCGACATTGAAGGATAAGACGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGCaa > 1:7850110/1‑68 (MQ=255) ggtaaggcaccggattctgattccggcattccgaggttcgaatcctcgtaccccagccacattaaaaa < 1:18402469‑M1/4‑1 (MQ=255) ggtaaggcaccggattctgattccggcattccgaggttcgaatcctcgtaccccagccacattaaaaa < 1:24328662‑M1/4‑1 (MQ=255) aTCCGACATTGAAGGATAAGACGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGCaaaaa > 1:29239677/1‑68 (MQ=255) aaggcaccggattctgattccggcattccgaggttcgaatcctcgtaccccagccaatttaAAAAAGc < 1:22516585‑M1/7‑1 (MQ=255) cGACATTGAAGGATAAGACGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGc > 1:27465887/1‑67 (MQ=255) ggcaccggattctgattccggcattccgaggttcgaatcctcgtaccccagccacattaAAAAAGCTc < 1:18055627‑M1/9‑1 (MQ=255) gcaccggattctgattccggcattccgaggttcgaatcctcgtaccccagccacattaATAaagcccg < 1:15666192‑M1/10‑4 (MQ=255) gcaccggattctgattccggcattccgaggttcgaatcctcgtaccccagccacattaAAAAAGCTc < 1:26820389‑M1/9‑1 (MQ=255) gcaccggattctgattccggcattccgaggttcgaatcctcgtaccccagccacattaAAAAAGCTc < 1:5411198‑M1/9‑1 (MQ=255) gcaccggattctgattccggcattccgaggttcgaatcctcgtaccccagccacattaAAAAAGCTc < 1:2873515‑M1/9‑1 (MQ=255) cATTGAAGGATAAGACGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCg > 1:22155539/1‑67 (MQ=255) accggtttttgataccggcattcccaggttcgaatcctcgtaccccagccacattaAAAAAGCTc < 1:17672232‑M1/9‑1 (MQ=255) tGAAGGATAAGACGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGa < 1:11200475/68‑1 (MQ=255) tGAAGGATAAGACGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGa < 1:27186253/68‑1 (MQ=255) gAAGGATAAGACGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGaa > 1:12793107/1‑68 (MQ=255) aGGATAAGACGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGc > 1:29395353/1‑68 (MQ=255) aGGATAAGACGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGc > 1:23312150/1‑68 (MQ=255) aTAAGACGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGa > 1:1751931/1‑67 (MQ=255) aTAAGACGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGa > 1:928780/1‑67 (MQ=255) tAAGACGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAg < 1:15549675/67‑1 (MQ=255) aaGACGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCt > 1:12354966/1‑68 (MQ=255) gACGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCttt > 1:23610983/1‑68 (MQ=255) caCGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCttt < 1:18930048/67‑1 (MQ=255) aCGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCtttt > 1:23376799/1‑68 (MQ=255) aCGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCtttt > 1:28897426/1‑68 (MQ=255) aCGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCtttt > 1:2612866/1‑68 (MQ=255) aCGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCtttt > 1:9698416/1‑68 (MQ=255) aCGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCtttt > 1:31223905/1‑68 (MQ=255) aCGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCtttt > 1:13015442/1‑68 (MQ=255) aCGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCtttt > 1:13095188/1‑68 (MQ=255) aCGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCtttt > 1:1333142/1‑68 (MQ=255) aCGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCtttt > 1:4901079/1‑68 (MQ=255) aCGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCtttt > 1:6407818/1‑68 (MQ=255) aCGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCtttt > 1:14637287/1‑68 (MQ=255) aCGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCtttt > 1:13982162/1‑68 (MQ=255) cGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCttttt > 1:2537148/1‑68 (MQ=255) cGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCttttt > 1:30321030/1‑68 (MQ=255) cGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCttttt > 1:10221386/1‑68 (MQ=255) cGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCttttt > 1:10743452/1‑68 (MQ=255) cGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCttttt > 1:20203555/1‑68 (MQ=255) cGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCttt < 1:28280522/66‑1 (MQ=255) cGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCttt < 1:16056021/66‑1 (MQ=255) cGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCttt < 1:30791132/66‑1 (MQ=255) cGTCTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCttt < 1:21980480/66‑1 (MQ=255) tgtCAACATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTa > 1:4230359/1‑68 (MQ=255) gtCAACATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTa < 1:12105817/67‑1 (MQ=255) aaCATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAAtgt < 1:30994882/68‑1 (MQ=255) aCATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAAtgtg < 1:24818228/68‑1 (MQ=255) aCATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAAtgtg > 1:15246799/1‑68 (MQ=255) cATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAAtgtg > 1:5258347/1‑67 (MQ=255) cATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTgg < 1:25653718/68‑1 (MQ=255) aTCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAAtgtg > 1:7334099/1‑66 (MQ=255) aTCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAAtgtg > 1:19249245/1‑66 (MQ=255) aTCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCACGCCGAAGCGAGCTTTTTTAAtgtg > 1:3382231/1‑66 (MQ=255) gCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTgg < 1:22950561/68‑1 (MQ=255) gCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTgg < 1:763180/68‑1 (MQ=255) gCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTgg < 1:18150303/68‑1 (MQ=255) gCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTgg < 1:19359515/68‑1 (MQ=255) aTTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTgggg < 1:11902404/68‑1 (MQ=255) aTTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTggg < 1:6482634/67‑1 (MQ=255) aTTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTggg < 1:28786230/67‑1 (MQ=255) aTTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTggg < 1:6526669/67‑1 (MQ=255) aTTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTggg < 1:8780012/67‑1 (MQ=255) ttCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGt < 1:13898470/68‑1 (MQ=255) ttCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGt < 1:6209919/68‑1 (MQ=255) ttCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGt < 1:7480591/68‑1 (MQ=255) cATTGAATGAACTCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGAg < 1:6919739/68‑1 (MQ=255) ttGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGAGGa < 1:16357699/68‑1 (MQ=255) ttGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGAGGa < 1:10414006/68‑1 (MQ=255) gaatgaaCGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGAGGAt > 1:17936630/1‑67 (MQ=255) atgaaCGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGAGGATTCg > 1:31776668/1‑68 (MQ=255) atgaaCGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGAGGATTCg > 1:21012405/1‑68 (MQ=255) atgaaCGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGAGGATTCg > 1:3787799/1‑68 (MQ=255) atgaaCGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGAGGATTCg > 1:8456545/1‑68 (MQ=255) atgaaCGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGAGGATTCg > 1:5924696/1‑68 (MQ=255) tgaaCGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGAGGATTCGa > 1:19882657/1‑68 (MQ=255) aaCGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTggg < 1:21454264/52‑1 (MQ=255) aCGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGAGGATTCGAAcc < 1:8094333/68‑1 (MQ=255) aCGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGAGGATTCGAAcc < 1:17069320/68‑1 (MQ=255) aCGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGAGGATTCGAAcc < 1:28050033/68‑1 (MQ=255) cGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGAGGATTCGAAcc > 1:14220220/1‑67 (MQ=255) cGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGAGGATTCGAAcc > 1:21804251/1‑67 (MQ=255) cGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGAGGATTCGAAcc > 1:28398375/1‑67 (MQ=255) gCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGAGGATTCGAACCTc > 1:19722006/1‑68 (MQ=255) aGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGAGGATTCGAACCTCg < 1:13662673/67‑1 (MQ=255) aaaGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGAGGATTCGAACCTCGGAAt > 1:11558933/1‑68 (MQ=255) aaaGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGAGGATTCGAACCTCGGAAt > 1:31613706/1‑68 (MQ=255) aGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGAGGATTCGAACCTCGGAATGc < 1:20666563/68‑1 (MQ=255) aGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGAGGATTCGAACCTCGGAATGc < 1:27661903/68‑1 (MQ=255) aGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGAGGATTCGAACCTCGGAATGc < 1:29622776/68‑1 (MQ=255) aGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGAGGATTCGAACCTCGGAATGc < 1:14910098/68‑1 (MQ=255) aGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGAGGATTCGAACCTCGGAATGc < 1:19091011/68‑1 (MQ=255) gCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGAGGATTCGAACCTCGGAATGcc > 1:4358948/1‑68 (MQ=255) gCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGAGGATTCGAACCTCGGAATGcc > 1:26423183/1‑68 (MQ=255) gCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGAGGATTCGAACCTCGGAATGcc > 1:25168817/1‑68 (MQ=255) | TCGCATCCGACATTGAAGGATAAGACGTGTCAACATCGCATTCGACATTGAATGAACGCAGAAAAGCAAAAAGCTCGCCGAAGCGAGCTTTTTTAATGTGGCTGGGGTACGAGGATTCGAACCTCGGAATGCCGG > CP009273/691788‑691922 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |