| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 1240767 = | 303 (0.790) | 17 (0.050) | 10/96 | NT | 6.3% | coding (152/441 nt) | ycgY | uncharacterized protein |
| ? | CP009273 | = 1302830 | 250 (0.760) | coding (73/1461 nt) | clsA | cardiolipin synthase 1 | |||||
Only 100 of 435 total aligned reads displayed.
ATTGAACATTTAGAATTGATCAATCCTTCTGGCAGATTAAGCCAAAATACCCGTTCGGCAATGCTTCAGTTACGCGAAGAGGAATGGTCTGAATTCTTTTTTTGGTTGCTAAATTCTCTGGAGTGTCTGGATTAT > CP009273/1240700‑1240834 | aTTGAACATTTAGAATTGATCAATCCTTCTGGCAGATTAAGCCAAAATACCCGTTCGGCAATGCTTCa < 1:29222275/68‑1 (MQ=255) tGAACTTTTTGAATTTATCAATCCTTCTGGCAGATTAAGCCAAAATACCCGTTCGGCAATGCTTCAGt < 1:10947729/68‑1 (MQ=255) tGAACATTTAGAATTGATCAATCCTTCTTGCAGATTAAGCCAAAATACCCGTTCGGCAATGCTTCAGt < 1:2638607/68‑1 (MQ=255) tGAACATTTAGAATTGATCAATCCTTCTGGCAGATTAAGCCAAAATACCCGTTCGGCAATGCTTCAGt > 1:2108850/1‑68 (MQ=255) atgtaaataatcatcagccaggccatcgcggagggaactgcgcgtcgtttcattagaatgcgtaaAg > 1:16517310‑M1/66‑67 (MQ=255) atgtaaataatcaacagccaggccatcgcggagggaactgcgcgtcgtttcattagaatgcgtaaAg > 1:14966196‑M1/66‑67 (MQ=255) atgtaaataatcaacagccaggccatcgcggagggaactgcgcgtcgtttcattagaatgcgtaaAg > 1:13706072‑M1/66‑67 (MQ=255) atgtaaataatcaacagccaggccatcgcggagggaactgcgcgtcgtttcattagaatgcgtaaAGt > 1:24428239‑M1/66‑68 (MQ=255) aaCATTTAGAATTGATCAATCCTTCTGGCAGATTAAGCCAAAATACCCGTTCGGCAATGCTTCAGtt > 1:23801613/1‑67 (MQ=255) aaCATTTAGAATTGATCAATCCTTCTGGCAGATTAAGCCAAAATACCCGTTCGGCAATGCTTCAGtt > 1:10538902/1‑67 (MQ=255) aaCATTTAGAATTGATCAATCCTTCTGGCAGATTAAGCCAAAATACCCGTTCGGCAATGCTTCAGtt > 1:18129888/1‑67 (MQ=255) aCATTTAGAATTGATCAATCCTTCTGGCAGATTAAGCCAAAATACCCGTTCGGCAATGCTTCAGTTAc < 1:21986687/68‑1 (MQ=255) aaataatcaacagccaggccatcgcggagggaactgcgcgtcgtttcattagaatgcgtaaAGTTAcg > 1:16979301‑M1/62‑68 (MQ=255) aaataatcaacagccaggccatcgcggagggaactgcgcgtcgtttcattagaatgcgtaaAGTTAcg > 1:14224983‑M1/62‑68 (MQ=255) aaataatcaacagccaggccatcgcggagggaactgcgcgtcgtttcattagaatgcgtaaAGTTAcg > 1:2520996‑M1/62‑68 (MQ=255) aaataatcaacagccaggccatcgcggagggaactgcgcgtcgtttcattagaatgcgtaaAGTTAcg > 1:24820493‑M1/62‑68 (MQ=255) aaataatcaacagccaggccatcgcggagggaactgcgcgtcgtttcattagaatgcgtaaAGTTAcg > 1:6937382‑M1/62‑68 (MQ=255) aaataatcaacagccaggccatcgcggagggaactgcgcgtcgtttcattagaatgcgtaaAGTTAcg > 1:24157881‑M1/62‑68 (MQ=255) ataatcaacagccaggccatcgcggagggacctgcgcgtcgtttcattagaatgcgtaaAGTTAcg < 1:18398139‑M1/7‑1 (MQ=255) ataatcaacagccaggccatcgcggagggaactgcgcgtcgtttcattagaatgcgtaaAGTTAcg < 1:7765462‑M1/7‑1 (MQ=255) ttAGAATTGATCAATCCTTCTGGCAGATTAAGCCAAAATACCCGTTCGGCAATGCTTCAGTTACGCGa < 1:27452906/68‑1 (MQ=255) tAGAATTGATCAATCCTTCTGGCAGATTAAGCCAAAATACCCGTTCGGCAATGCTTCAGTTACGCGaa < 1:28730527/68‑1 (MQ=255) tAGAATTGATCAATCCTTCTGGCAGATTAAGCCAAAATACCCGTTCGGCAATGCTTCAGTTACGCGaa < 1:2347763/68‑1 (MQ=255) gAATTGATCAATCCTTCTGGCAGATTAAGCCAAAATACCCGTTCGGCAATGCTTCAGTTACGCGAaga > 1:16203318/1‑68 (MQ=255) aaTTGATCAATCCTTCTGGCAGATTAAGCCAAAATACCCGTTCGGCAATGCTTCAGTTACGCGAagag > 1:31476069/1‑68 (MQ=255) aTTGATCAATCCTTCTGGCAGATTAAGCCAAAATACCCGTTCGGCAATGCTTCAGTTACGCGAaga < 1:3131218/66‑1 (MQ=255) aTTGATCAATCCTTCTGGCAGATTAAGCCAAAATACCCGTTCGGCAATGCTTCAGTTACGCGAAGAgg > 1:18974490/1‑68 (MQ=255) aTTGATCAATCCTTCTGGCAGATTAAGCCAAAATACCCGTTCGGCAATGCTTCAGTTACGCGAAGAgg > 1:26907756/1‑68 (MQ=255) acagccaggccatcgcggagggaactgcgcgtcgtttcattagaatgcgtaaAGTTACGCGAAGAGGa < 1:29757593‑M1/16‑1 (MQ=255) tCAATCCTTCTGGCAGATTAAGCCAAAATACCCGTTCGGCAATGCTTCAGTTACGCGAAGAGGAATgg < 1:30738850/68‑1 (MQ=255) tCAATCCTTCTGGCAGATTAAGCCAAAATACCCGTTCGGCAATGCTTCAGTTACGCGAAGAGGAATgg < 1:8102238/68‑1 (MQ=255) tCAATCCTTCTGGCAGATTAAGCCAAAATACCCGTTCGGCAATGCTTCAGTTACGCGAAGAGGAATgg > 1:8764197/1‑68 (MQ=255) tCAATCCTTCTGGCAGATTAAGCCAAAATACCCGTTCGGCAATGCTTCAGTTACGCGAAGAGGAATgg < 1:4035296/68‑1 (MQ=255) aaTCCTTCTGGCAGATTATGCCAAAATACCCGTTCGGCAATGCTTCAGTTACGCGAAGAGGAATGGTc < 1:100314/68‑1 (MQ=255) aaTCCTTCTGGCAGATTAAGCCAAAATACCCGTTCGGCAATGCTTCAGTTACGCGAAGAGGAATGGTc < 1:6325549/68‑1 (MQ=255) gccatcgcggagggaactgcgcgtcgtttcattagaatgcgtaaAGTTAcg > 1:22229997‑M1/45‑51 (MQ=255) ccTTCTGGCAGATTAAGCCAAAATACCCGTTCGGCAATGCTTCAGTTACGCGAAGAGGAATGGTCTGa > 1:27286627/1‑68 (MQ=255) ccTTCTGGCAGATTAAGCCAAAATACCCGTTCGGCAATGCTTCAGTTACGCGAAGAGGAATGGTCTGa < 1:2048375/68‑1 (MQ=255) ccTTCTGGCAGATTAAGCCAAAATACCCGTTCGGCAATGCTTCAGTTACGCGAAGAGGAATGGTCTGa > 1:21421534/1‑68 (MQ=255) ccTTCTGGCAGATTAAGCC‑AAATACCCGTTCGGCAATGCTTCAGTTACGCGAAGAGGAATGGTCTGaa > 1:24305693/1‑68 (MQ=255) tGGCAGATTAAGCCAAAATACACGTTCGGCAATGCTTCAGTTACGCGAAGAGGAATGGTCTGAAttat > 1:13513650/1‑66 (MQ=255) gCAGATTAAGCCAAAATACCCGTTCGGCAATGCTTCAGTTACGCGAAGAGGAATGGTCTGAATTCttt > 1:9749262/1‑68 (MQ=255) gCAGATTAAGCCAAAATACCCGTTCGGCAATGCTTCAGTTACGCGAAGAGGAATGGTCTGAATTCttt > 1:8581481/1‑68 (MQ=255) gCAGATTAAGCCAAAATACCCGTTCGGCAATGCTTCAGTTACGCGAAGAGGAATGGTCTGAATTCttt > 1:4716332/1‑68 (MQ=255) gCAGATTAAGCCAAAATACCCGTTCGGCAATGCTTCAGTTACGCGAAGAGGAATGGTCTGAATTCttt > 1:4441093/1‑68 (MQ=255) gCAGATTAAGCCAAAATACCCGTTCGGCAATGCTTCAGTTACGCGAAGAGGAATGGTCTGAATTCttt > 1:27769276/1‑68 (MQ=255) gCAGATTAAGCCAAAATACCCGTTCGGCAATGCTTCAGTTACGCGAAGAGGAATGGTCTGAATTCttt > 1:23349221/1‑68 (MQ=255) gCAGATTAAGCCAAAATACCCGTTCGGCAATGCTTCAGTTACGCGAAGAGGAATGGTCTGAATTCttt > 1:17352846/1‑68 (MQ=255) gCAGATTAAGCCAAAATACCCGTTCGGCAATGCTTCAGTTACGCGAAGAGGAATGGTCTGAATTCttt > 1:12206032/1‑68 (MQ=255) aTTAAGCCAAAATACCCGTTCGGCAATGCTTCAGTTACGCGAAGAGGAATGGTCTGAATTCttttttt > 1:29987926/1‑68 (MQ=255) ttAAGCCAAAATACCCGTTCGGCAATGCTTCAGTTACGCGAAGAGGAATGGTCTGAATTCTTTTTTTg > 1:10414225/1‑68 (MQ=255) ccAAAATACCCGTTCGGCAATGCTTCAGTTACGCGAAGAGGAATGGTCTGAATTCTTTTTTTGGtt > 1:12919488/1‑66 (MQ=255) cAAAATACCCGTTCGGCAATGCTTCAGTTACGCGAAGAGGAATGGTCCGAATTCTTTTTTTGGTTGc < 1:6707606/67‑1 (MQ=255) gcgtcgtttcattagaatgcgtaaAGTTACGCGAAGAGGAATGGTCTGAATTCTTTTTTTGGTTGCTa < 1:6078596‑M1/44‑1 (MQ=255) aaaaTACCCGTTCGGCAATGCTTCAGTTACGCGAAGAGGAATGGTCTGAATTCTTTTTTTGGTTGCTa < 1:11600484/68‑1 (MQ=255) aTACCCGTTCGGCAATGCTTCAGTTACGCGAAGAGGAATGGTCTGAATTCTTTTTTTGGTTGCTAAAt < 1:3090700/68‑1 (MQ=255) tACCCGTTCGGCAATGCTTCAGTTACGCGAAGAGGAATGGTCTGAATTCTTTTTTTGGTTGCTAAAt > 1:5512285/1‑67 (MQ=255) aCCCGTTCGGCACTGCTTAAGTTACGCGAAGAGGAATGGTCTGAATTCTTTTTTTGGTTGCTAAATtc < 1:12646650/68‑1 (MQ=255) aCCCGTTCGGCAATGCTTCATTTACGCCAACAGGAATGGTCTGAATTCTTTTTTTGTTTGCAAAAt > 1:7241236/1‑66 (MQ=255) aCCCGTTCGGCAATGCTTCAGTTACGCGAAGAGGAATGGTCTGTATTCTTTTTTTGGTTGCTAAATtc < 1:19482770/68‑1 (MQ=255) aCCCGTTCGGCAATGCTTCAGTTACGCGAAGAGGAATGGTCTGAATTCTTTTTTTGGTTGCTAAATtc < 1:15190328/68‑1 (MQ=255) aCCCGTTCGGCAATGCTTCAGTTACGCGAAGAGGAATGGTCTGAATTCTTTTTTTGGTTGCTAAATtc < 1:21693418/68‑1 (MQ=255) aCCCGTTCGGCAATGCTTCAGTTACGCGAAGAGGAATGGTCTGAATTCTTTTTTTGGTTGCTAAATtc < 1:25505955/68‑1 (MQ=255) aCCCGTTCGGCAATGCTTCAGTTACGCGAAGAGGAATGGTCTGAATTCTTTTTTTGGTTGCTAAATtc < 1:20713288/68‑1 (MQ=255) aCCCGTTCGGCAATGCTTCAGTTACGCGAAGAGGAATGGTCTGAATTCATTTTTTGGTTGCTAAATtc < 1:9424678/68‑1 (MQ=255) cccGTTCGGCAATGCTTCAGTTACGCGAAGAGGAATGGTCTGAATTCTTTTTTTGGTTGCTAAATtct < 1:8406921/68‑1 (MQ=255) cccGTTCGGCAATGCTTCAGTTACGCGAAGAGGAATGGTCTGAATTCTTTTTTTGGTTGCTAAATtc > 1:3709099/1‑67 (MQ=255) cGTTCGGCAATGCTTCAGTTACGCGAAGAGGAATGGTCTGAATTCTTTTTTTGGTTGCTAAATtc > 1:1974966/1‑65 (MQ=255) gTTCGGCAATGCTTCAGTTACGCGAAGAGGAATGGTCTGAATTCTTTTTTTGGTTGCTAAATTCTCTg < 1:32091051/68‑1 (MQ=255) ggCAATTCTTCAGTTACGCGAAGTGGAATGGTCTGAATTCTTTTTTTGGTTGCTAAATTCTCTGGAgt < 1:10841529/68‑1 (MQ=255) cAATGCTTCAGTTACGCGAAGAGGAATGGTCTGAATTCTTTTTTTGGTTGCTAAATTCTCTGGAgtg < 1:9067388/67‑1 (MQ=255) cAATGCTTCAGTTACGCGAAGAGGAATGGTCTGAATTCTTTTTTTGGTTGCTAAATTCTCTGGAgtg < 1:14587686/67‑1 (MQ=255) cAATGCTTCAGTTACGCGAAGAGGAATGGTCTGAATTCTTTTTTTGGTTGCTAAATTCTCTGGAgtg < 1:3193680/67‑1 (MQ=255) cAATGCTTCAGTTACGCGAAGAGGAATGGTCTGAATTCTTTTTTTGGTTGCTAAATTCTCTGGAgtg < 1:28866356/67‑1 (MQ=255) cAATGCTTCAGTTACGCGAAGAGGAATGGTCTGAATTCTTTTTTTGGTTGCTAAATTCTCTGGAgtg < 1:22913654/67‑1 (MQ=255) cAATGCTTCAGTTACGCGAAGAGGAATGGTCTGAATTCTTTTTTTGGTTGCTAAATTCTCTGGAgtg < 1:22628642/67‑1 (MQ=255) cAATGCTTCAGTTACGCGAAGAGGAATGGTCTGAATTCTTTTTTTGGTTGCTAAATTCTCTGGAgtg < 1:17658488/67‑1 (MQ=255) aatgcgtaaAGTTACGCGAAGAGGAATGGTCTGAATTCTTTTTTTGGTTGCTAAATTCTCTGGAgtg < 1:11819093‑M1/58‑1 (MQ=255) aatgcgtaaAGTTACGCGAAGAGGAATGGTCTGAATTCTTTTTTTGGTTGCTAAATTCTCTGGAgtg < 1:1916903‑M1/58‑1 (MQ=255) taTGCTTCAGTTACGCGAAGAGGAATGGTCTGAATTCTTTTTTTGGTTGCTAAATTCTCTGGAgtgt < 1:3387815/66‑1 (MQ=255) atgcgtaaAGTTACGCGAAGAGGAATGGTCTGAATTCTTTTTTTGGTTGCTAAATTCTCTGGAgtgt > 1:13115130‑M1/9‑67 (MQ=255) aaTGCTTCAGTTACGCTAAGAGTAATGGTCTGAATTCTTTTTTTGGTTGCTAAATTCTCTGGAgtgt < 1:12105563/67‑1 (MQ=255) aaTGCTTCAGTTACGCGAAGAGGAATGGTCTGAATTCTTTTTTTGGTTGCTAAATTCTCTGGAgtgt < 1:5885640/67‑1 (MQ=255) aaTGCTTCAGTTACGCGAAGAGGAATGGTCTGAATTCTTTTTTTGGTTGCTAAATTCTCTGGAgtgt < 1:8341278/67‑1 (MQ=255) aaTGCTTCAGTTACGCGAAGAGGAATGGTCTGAATTCTTTTTTTGGTTGCTAAATTCTCTGGAgtgt < 1:25794960/67‑1 (MQ=255) aaTGCTTCAGTTACGCGAAGAGGAATGGTCTGAATTCTTTTTTTGGTTGCTAAATTCTCTGGAgtgt < 1:19346034/67‑1 (MQ=255) aaTGCTTCAGTTACGCGAAGAGGAATGGTCTGAATTCTTTTTTTGGTTGCTAAATTCTCTGGAgtgt < 1:1544034/67‑1 (MQ=255) aaTGCTTCAGTTACGCGAAGAGGAATGGTCTGAATTCTTTTTTTGGTTGCTAAATTCTCTGGAgtgt < 1:24988994/67‑1 (MQ=255) aaTGCTTCAGTTACGCGAAGAGGAATGGTCTGAATTCTTTTTTTGGTTGCTAAATTCTCTGGAgtgt < 1:22497146/67‑1 (MQ=255) aaTGCTTCAGTTACGCGAAGAGGAATGGTCTGAATTCTTTTTTTGGTTGCTAAATTCTCTGGAgtgt < 1:16891643/67‑1 (MQ=255) aaTGCTTCAGTTACGCGAAGAGGAATGGTCTGAATTCTTTTTTTGGTTGCTAAATTCTCTGGAgtgt < 1:29875642/67‑1 (MQ=255) aaTGCTTCAGTTACGCGAAGAGGAATGGTCTGAATTCTTTTTTTGGTTGCTAAATTCTCTGGAgtgt < 1:16837747/67‑1 (MQ=255) aaTGCTTCAGTTACGCGAAGAGGAATGGTCTGAATTCTTTTTTTGGTTGCTAAATTCTCTGGAgtg > 1:6562470/1‑66 (MQ=255) aaTGCTTCAGTTACGCGAAGAGGAATGGTCTGAATTCTTTTTTTGGTTGCTAAATTCTCTGGAGTGTc < 1:19969653/68‑1 (MQ=255) tGCTTCAGTTACGCGAAGAGGAATGGTCTGAATTCTTTTTTTGGTTGCTAAATTCTCTGGAGTGTCTg < 1:5386383/68‑1 (MQ=255) gCTTCAGTTACGCGAAGAGGAATGGTCTGAATTCTTTTTTTGGTTGCTAAATTCTCTGGAGTGTCTgg < 1:18536268/68‑1 (MQ=255) gtaaAGTTACGCGAAGAGGAATGGTCTGAATTCTTTTTTTGGTTGCTAAATTCTCTGGAGTGTCTGGa > 1:23630434‑M1/5‑68 (MQ=255) ttCAGTTACGCGAAGAGGAATGGTCTGAATTCTTTTTTTGGTTGCTAAATTCTCTGGAGTGTCTGGa < 1:7448664/67‑1 (MQ=255) ttCAGTTACGCGAAGAGGAATGGTCTGAATTCTTTTTTTGGTTGCTAAATTCTCTGGAGTGTCTGGa < 1:28160768/67‑1 (MQ=255) ttCAGTTACGCGAAGAGGAATGGTCTGAATTCTTTTTTTGGTTGCTAAATTCTCTGGAGTGTCTGGa < 1:4976583/67‑1 (MQ=255) | ATTGAACATTTAGAATTGATCAATCCTTCTGGCAGATTAAGCCAAAATACCCGTTCGGCAATGCTTCAGTTACGCGAAGAGGAATGGTCTGAATTCTTTTTTTGGTTGCTAAATTCTCTGGAGTGTCTGGATTAT > CP009273/1240700‑1240834 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |