New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 2495412 =241 (0.630)8 (0.030) 4/92 NT 5.0% coding (804/858 nt) ypdC putative DNA‑binding protein
?CP009273 2495438 = 105 (0.330)coding (830/858 nt) ypdC putative DNA‑binding protein

Only 100 of 330 total aligned reads displayed.

TCTGTCAATTCATGAAGTGGCACAGCGTTGCGGTTTTCCGGATAGCGACTATTTTTGTCGCGTTTTCCGGCGTCAGTTTGGTCTGACGCCGGGAGAGTACAGCGCCCGTTTTCAGGGCTAACGTCAGAAGGTT  >  CP009273/2495346‑2495478
                                                                  |                                                                  
tcTGTCAATTCATGAAGTGGCACAGCGTTGCGGTTTTCCGGATAGCGCCTATTTTTGTCGCGTTTTcc                                                                   >  1:11552803/1‑68 (MQ=255)
tcTGTCAATTCATGAAGTGGCACAGCGTTGCGGTTTTCCGGATAGCGACTATTTTTGTCGCGTTTTcc                                                                   >  1:10616906/1‑68 (MQ=255)
tcTGTCAATTCATGAAGTGGCACAGCGTTGCGGTTTTCCGGATAGCGACTATTTTTGTCGCGTTTTcc                                                                   >  1:19446879/1‑68 (MQ=255)
tcTGTCAATTCATGAAGTGGCACAGCGTTGCGGTTTTCCGGATAGCGACTATTTTTGTCGCGTTTTcc                                                                   >  1:13425461/1‑68 (MQ=255)
tcTGTCAATTCATGAAGTGGCACAGCGTTGCGGTTTTCCGGATAGCGACTATTTTTGTCGCGTTTTcc                                                                   >  1:26275161/1‑68 (MQ=255)
  ctgacgctgctggaaacagaattaaccttctgacgttagccctgaaaacgggcgctgtactctcCCg                                                                  <  1:3495143‑M1/3‑1 (MQ=255)
   tgacgctgctggaaacagaattaaccttctgacgttcgccctgaaaacgggcgctgtactctcCCGGc                                                                >  1:26503767‑M1/64‑68 (MQ=255)
   tgacgctgctggaaacagaattaaccttctgacgttagccctgaaaacgggcgctgtactctcCCGGc                                                                >  1:9229720‑M1/64‑68 (MQ=255)
   tgacgctgctggaaacagaattaaccttctgacgttagccctgaaaacgggcgctgtactctcCCGGc                                                                >  1:11416590‑M1/64‑68 (MQ=255)
   tgacgctgctggaaacagaattaaccttctgacgttagccctgaaaacgggcgctgtactctcCCGGc                                                                >  1:13013504‑M1/64‑68 (MQ=255)
    gacgctgctggaaacagaattaaccttctgacgttagccctgaaaacgggcgctgtactctcCCGGCg                                                               >  1:3957171‑M1/63‑68 (MQ=255)
     cAATTCATGAAGTGGCACAGCGTTGCGGTTTTCCGGATAGCGACTATTTTTGTCGCGTTTTCCGGCg                                                               <  1:23155036/67‑1 (MQ=255)
        ttCATGAAGTGGCACAGCGTTGCGGTTTTCCGGATAGCGACTATTTTTGTCGCGTTTTCCGGCGTCAg                                                           <  1:12270740/68‑1 (MQ=255)
         tgctggaaacagaattaaccttctgacgttagccctgaaaacgggcgctgtactctcCCGGCGTCAg                                                           >  1:17430142‑M1/58‑67 (MQ=255)
         tgctggaaacagaattaaccttctgacgttagccctgaaaacgggcgctgtactctcCCGGCGTCAg                                                           >  1:14353283‑M1/58‑67 (MQ=255)
         tgctggaaacagaattaaccttctgacgttagccctgaaaacgggcgctgtactctcCCGGCGTCAg                                                           >  1:31645080‑M1/58‑67 (MQ=255)
         tCATGAAGTGGCACAGCGTTGCGGTTTTCCGGATAGCGACTATTTTTGTCGCGTTTTCCGGCGTCAGt                                                          <  1:6452106/68‑1 (MQ=255)
          cATGAAGTGGCACAGCGTTGCGGTTTTCCGGATAGCGACTATTTTTGTCGCGTTTTCCGGCGTCAGtt                                                         >  1:9470156/1‑68 (MQ=255)
          cATGAAGTGGCACAGCGTTGCGGTTTTCCGGATAGCGACTATTTTTGTCGCGTTTTCCGGCGTCAGtt                                                         >  1:2409746/1‑68 (MQ=255)
               aGTGGCACAGCGTTGCGGTTTTCCGGATAGCGACTATTTTTGTCGCGTTTTCCGGCGTCAGTTTgg                                                      >  1:11059634/1‑66 (MQ=255)
                  ggCACAGCGTTGCGGTTTTCCGGATAGCGACTATTTTTGTCGCGTTTTCCGGCGTCAGTTTGGTCTGa                                                 <  1:15274732/68‑1 (MQ=255)
                  ggCACAGCGTTGCGGTTTTCCGGATAGCGACTATTTTTGTCGCGTTTTCCGGCGTCAGTTTGGTCTGa                                                 <  1:12640982/68‑1 (MQ=255)
                     acaGCGTTGCGGTTTTCCGGATAGCGACTATTTTTGTCGCGTTTTCCGGCGTCAGTTTGGTCTGACg                                               >  1:20920742/1‑67 (MQ=255)
                     acaGCGTTGCGGTTTTCCGGATAGCGACTATTTTTGTCGCGTTTTCCGGCGTCAGTTTGGTCTGACg                                               >  1:20865823/1‑67 (MQ=255)
                     acaGCGTTGCGGTTTTCCGGATAGCGACTATTTTTGTCGCGTTTTCCGGCGTCAGTTTGGTCTGACg                                               <  1:29697639/67‑1 (MQ=255)
                     acaGCGTTGCGGTTTTCCGGATAGCGACTATTTTTGTCGCGTTTTCCGGCGTCAGTTTGGTCTGACg                                               <  1:20018841/67‑1 (MQ=255)
                     acaGCGTTGCGGTTTTCCGGATAGCGACTATTTTTGTCGCGTTTTCCGGCGTCAGTTTGGTCTGACg                                               >  1:21483585/1‑67 (MQ=255)
                     acaGCGTTGCGGTTTTCCGGATAGCGACTATTTTTGTCGCGTTTTCCGGCGTCAGTTTGGTCTGACg                                               <  1:13687113/67‑1 (MQ=255)
                     acaGCGTTGCGGTTTTCCGGATAGCGACTATTTTTGTCGCGTTTTCCGGCGTCAGTTTGGTCTGACg                                               >  1:31815068/1‑67 (MQ=255)
                     acaGCGTTGCGGTTTTCCGGATAGCGACTATTTTTGTCGCGTTTTCCGGCGTCAGTTTGGTCTGACg                                               <  1:14722701/67‑1 (MQ=255)
                     acaGCGTTGCGGTTTTCCGGATAGCGACTATTTTTGTCGCGTTTTCCGGCGTCAGTTTGGTCTGACg                                               >  1:7046662/1‑67 (MQ=255)
                     acaGCGTTGCGGTTTTCCGGATAGCGACTATTTTTGTCGCGTTTTCCGGCGTCAGTTTGGTCTGACg                                               <  1:8027705/67‑1 (MQ=255)
                     acaGCGTTGCGGTTTTCCGGATAGCGACTATTTTTGTCGCGTTTTCCGGCGTCAGTTTGGTCTGACg                                               <  1:2548059/67‑1 (MQ=255)
                     acaGCGTTGCGGTTTTCCGGATAGCGACTATTTTTGTCGCGTTTTCCGGCGTCAGTTTGGTCTGACg                                               <  1:15479937/67‑1 (MQ=255)
                       aGCGTTGCGGTTTTCCGGATAGCGACTATTTTTGTCGCGTTTTCCGGCGTCAGTTTGGTCTGACGCCg                                            >  1:12046199/1‑68 (MQ=255)
                       aGCGTTGCGGTTTTCCGGATAGCGACTATTTTTGTCGCGTTTTCCGGCGTCAGTTTGGTCTGACGCCg                                            >  1:24569875/1‑68 (MQ=255)
                         cGTTGCGGTTTTCCGGATAGCGACTATTTTTGTCGCGTTTTCCGGCGTCAGTTTGGTCTGCCGCCggg                                          >  1:27108592/1‑68 (MQ=255)
                         cGTTGCGGTTTTCCGGATAGCGACTATTTTTGTCGCGTTTTCCGGCGTCAGTTTGGTCTGACGCCggg                                          >  1:16811023/1‑68 (MQ=255)
                          gtggCGGTTTTCCGGATCGCGACTATTTTTGTCGCGTTTTCCGGCGTCAGTTTGGTCTGACGCCggg                                          <  1:30603756/64‑1 (MQ=255)
                          gatGCGGTTTTCCGGATAGCGACTATTTTTGTCGCGTTTTCCGGCGTCAGTTTGGTCTGACGCCggg                                          <  1:10062521/65‑1 (MQ=255)
                          gTTGCGGTTTTCCGGATAGCGACTATTTTTGTCGCGTTTTCCGGCGTCAGTTTGGTCTGACGcc                                             <  1:12442051/64‑1 (MQ=255)
                          gTTGCGGTTTTCCGGATAGCGACTATTTTTGTCGCGTTTTCCGGCGTCAGTTTGGTCTGACGcc                                             <  1:8233463/64‑1 (MQ=255)
                          gTTGCGGTTTTCCGGATAGCGACTATTTTTGTCGCGTTTTCCGGCGTCAGTTTGGTCTGACGCCggg                                          <  1:2782153/67‑1 (MQ=255)
                          gTTGCGGTTTTCCGGATAGCGACTATTTTTGTCGCGTTTTCCGGCGTCAGTTTGGTCTGACGCCggg                                          <  1:28407163/67‑1 (MQ=255)
                          gTTGCGGTTTTCCGGATAGCGACTATTTTTGTCGCGTTTTCCGGCGTCAGTTTGGTCTGACGCCggg                                          <  1:26301150/67‑1 (MQ=255)
                          gTTGCGGTTTTCCGGATAGCGACTATTTTTGTCGCGTTTTCCGGCGTCAGTTTGGTCTGACGCCggg                                          <  1:8603911/67‑1 (MQ=255)
                          gTTGCGGTTTTCCGGATAGCGACTATTTTTGTCGCGTTTTCCGGCGTCAGTTTGGTCTGACGCCggg                                          <  1:20570996/67‑1 (MQ=255)
                          gTTGCGGTTTTCCGGATAGCGACTATTTTTGTCGCGTTTTCCGGCGTCAGTTTGGTCTGACGCCggg                                          <  1:17132378/67‑1 (MQ=255)
                          gTTGCGGTTTTCCGGATAGCGACTATTTTTGTCGCGTTTTCCGGCGTCAGTTTGGTCTGACGCCggg                                          <  1:18143229/67‑1 (MQ=255)
                          gTTGCGGTTTTCCGGATAGCGACTATTTTTGTCGCGTTTTCCGGCGTCAGTTTGGTCTGACGCCggg                                          <  1:21819786/67‑1 (MQ=255)
                          gTTGCGGTTTTCCGGATAGCGACTATTTTTGTCGCGTTTTCCGGCGTCAGTTTGGTCTGACGCCggg                                          <  1:2117605/67‑1 (MQ=255)
                          gTTGCGGTTTTCCGGATAGCGACTATTTTTGTCGCGTTTTCCGGCGTCAGTTTGGTCTGACGCCGGga                                         >  1:2241971/1‑68 (MQ=255)
                          gTTGCGGTTTTCCGGATAGCGACTATTTTTGTCGCGTTTTCCGGCGTCAGTTTGGGCTGACGCCggg                                          <  1:18269577/67‑1 (MQ=255)
                          gTTGCGGTTTTCCGGATAGCGACTATTTTTGTCGCGTTTTCCGGCGTCAGTTTGGGCTGACGCCggg                                          <  1:5559643/67‑1 (MQ=255)
                            tGCGGTTTTCCGGATAGCGACTATTTTTGTCGCGTTTTCCGGCGTCAGTTTGGTCTGACGCCGGgag                                        <  1:11767281/67‑1 (MQ=255)
                             gCGGTTTTCCGGATAGCGACTATTTTTGTCGCGTTTTCCGGCGTCAGTTTGGTCTGACGCCGGGagag                                      >  1:19272801/1‑68 (MQ=255)
                             gCGGTTTTCCGGATAGCGACTATTTTTGTCGCGTTTTCCGGCGTCAGTTTGGTCTGACGCCGGGagag                                      <  1:31997031/68‑1 (MQ=255)
                               gggtttCCGGATAGCGACTATTAATGGCGCGTTTTCCGGCGTCAGTTTGGTCTGACGCCGGGAGAGTa                                    <  1:7247850/65‑1 (MQ=255)
                               ggTTTTCCGGATAGTGACTATTTTTGTCGCGTTTTCCGGCGACAGTTTGGTCTGACGCCGGGAGAGt                                     <  1:21654604/67‑1 (MQ=255)
                               ggTTTTCCGGATAGCGACTATTTTTGTCGCGTTTTCCGGCGTCAGTTTGGTCTGACGCCGGGAGAGt                                     >  1:30211681/1‑67 (MQ=255)
                               ggTTTTCCGGATAGCGACTATTTTTGTCGCGTTTTCCGGCGTCAGTTTGGTCTGACGCCGGGAGAGt                                     <  1:25687423/67‑1 (MQ=255)
                               ggTTTTCCGGATAGCGACTATTTTTGTCGCGTTTTCCGGCGTCAGTTTGGTCTGACGCCGGGAGAGt                                     >  1:6658906/1‑67 (MQ=255)
                               ggTTTTCCGGATAGCGACTATTTTTGTCGCGTTTTCCGGCGTCAGTTTGGTCTGACGCCGGGAGAGTa                                    <  1:4766862/68‑1 (MQ=255)
                               ggTTTTCCGGATAGCGACTATTTTTGTCGCGTTTTCCGGCGTCAGTTTGGTCTGACGCCGGGAGAGTa                                    <  1:4464797/68‑1 (MQ=255)
                               ggTTTTCCGGATAGCGACTATTTTTGTCGCGTTTTCCGGCGTCAGTTTGGTCTGACGCCGGGAGAGTa                                    <  1:16312561/68‑1 (MQ=255)
                               ggTTTTCCGGATAGCGACTATTTTTGTCGCGTTTTCCGGCGTCAGTTTGGTCTGACGCCGGGAGAGTa                                    <  1:14218774/68‑1 (MQ=255)
                                    gttagccctgaaaacgggcgctgtactctcCCGGCGGCAGTTTGGTCTGGCGGCGGGTGCGTGCAgcg                               <  1:23316294‑M1/38‑1 (MQ=255)
                                     ttagccctgaaaacgggcgctgtactctcCCGGCGTCAGTTTGGTCTGACGCCGGGAGAGTACAgcg                               <  1:28846835‑M1/38‑1 (MQ=255)
                                      cGGATAGCGACTATTTTTGTCGCGTTTTCCGGCGTCAGTTTGGTCTGACGCCGGGAGAGTACAGCGcc                             <  1:19609076/68‑1 (MQ=255)
                                         aTAGCGACTATTTTTGTCGCGTTTTCCGGCGTCAGTTTGGTCTGACGCCGGGAGAGTACAGCGCCCg                           <  1:26829661/67‑1 (MQ=255)
                                         aTAGCGACTATTTTTGTCGCGTTTTCCGGCGTCAGTTTGGTCTGACGCCGGGAGAGTACAGCGCCCGt                          >  1:16063139/1‑68 (MQ=255)
                                         aTAGCGACTATTTTTGTCGCGTTTTCCGGCGTCAGTTTGGTCTGACGCCGGGAGAGTACAGCGCCCGt                          >  1:14022038/1‑68 (MQ=255)
                                         aTAGCGACTATTTTTGTCGCGTTTTCCGGCGTCAGTTTGGTCTGACGCCGGGAGAGTACAGCGCCCGt                          >  1:22200724/1‑68 (MQ=255)
                                         aTAGCGACTATTTTTGTCGCGTTTTCCGGCGTCAGACCAAACTGACGCCGGGAGAGTACAGCGCCCGt                          >  1:21088312/1‑68 (MQ=21)
                                           aGCGACTATTTTTGTCGCGTTTTCCGGCGTCAGTTTGGTCTGACGCCGGGAGAGTACAGCGCCCGttt                        <  1:24328156/68‑1 (MQ=255)
                                              gACTATTTTTGTCGCGTTTTCCGGCGTCAGTTTGGTCTGACGCCGGGAGAGTACAGCGCCCGtttt                       <  1:20281173/66‑1 (MQ=255)
                                              gACTATATTTGGCGCGTTTTCCGGCGGCAGTTTGGTCTGACGCCGGGAGAGTACAGCGCCCGtttt                       <  1:23607119/66‑1 (MQ=255)
                                                cTATTTTTGTCGCGTTTTCCGGCGTCAGTTTGGTCTGACGCCGGGAGAGTACAGCGCCCGTTTTCAgg                   <  1:14820856/68‑1 (MQ=255)
                                                  aTTTTTGTCGCGTTTTCCGGCGTCAGTTTGGTCTGACGCCGGGAGAGTACAGCGCCCGTTTTCAGGGc                 <  1:10263826/68‑1 (MQ=255)
                                                     tttGTCGCGTTTTCCGGCGTCAGTTTGGTCTGACGCCGGGAGAGTACAGCGCCCGTTTTCAGGGCTaa              <  1:16745594/68‑1 (MQ=255)
                                                     tttGTCGCGTTTTCCGGCGTCAGTTTGGTCTGACGCCGGGAGAGTACAGCGCCCGTTTTCAGGGCTaa              <  1:25200296/68‑1 (MQ=255)
                                                     tttGTCGCGTTTTCCGGCGTCAGTTTGGTCTGACGCCGGGAGAGTACAGCGCCCGTTTTCAGGGCTa               >  1:7817726/1‑67 (MQ=255)
                                                       tGTCGCGTTTTCCGGCGTCAGTTTGGTCTGACGCCGGGAGAGTACAGCGCCCGTTTTCAGGGCTAACg            <  1:10478943/68‑1 (MQ=255)
                                                       tGTCGCGTTTTCCGGCGTCAGTTTGGTCTGACGCCGGGAGAGTACAGCGCCCGTTTTCAGGGCTAACg            <  1:31073725/68‑1 (MQ=255)
                                                       tGTCGCGTTTTCCGGCGTCAGTTTGGTCTGACGCCGGGAGAGTACAGCGCCCGTTTTCAGGGCTAACg            <  1:29168140/68‑1 (MQ=255)
                                                       tGTCGCGTTTTCCGGCGTCAGTTTGGTCTGACGCCGGGAGAGTACAGCGCCCGTTTTCAGGGCTAACg            >  1:24378645/1‑68 (MQ=255)
                                                       tGTCGCGTTTTCCGGCGTCAGTTTGGTCTGACGCCGGGAGAGAACAGCGCCCGTTTTCAGGGCTAACg            >  1:21976078/1‑68 (MQ=255)
                                                          cgcgTTTTCCGGCGTCAGTTTGGTCTGACGCCGGGAGAGTACAGCGCCCGTTTTCAGGGCTAACGTCa         >  1:20218579/1‑68 (MQ=255)
                                                          cgcgTTTTCCGGCGTCAGTTTGGTCTGACGCCGGGAGAGTACAGCGCCCGTTTTCAGGGCTAACGTCa         >  1:31155284/1‑68 (MQ=255)
                                                            actctcCCGGCGTCAGTTTGGTCTGACGCCGGGAGAGTACAGCGCCCGTTTTCAGGGCTAACGTCAGa       <  1:5897435‑M1/62‑1 (MQ=255)
                                                              tctcCCGGCGTCAGTTTGGTCTGCCGCCGGGAGAGTACAGCGCCCGGTTTCAGGGCTAACGTCAGAAg     <  1:9421002‑M1/64‑1 (MQ=255)
                                                              tctcCCGGCGTCAGTTTGGTCTGACGCCGGGAGAGTACAGCGCCCGTTTTCAGGGCTAACGTCAGAAg     <  1:4251057‑M1/64‑1 (MQ=255)
                                                              tctcCCGGCGTCAGTTTGGTCTGACGCCGGGAGAGTACAGCGCCCGTTTTCAGGGCTAACGTCAGAAg     <  1:28991121‑M1/64‑1 (MQ=255)
                                                               tttCCGGCGTCAGTTTTGTCTGACGCCGGGAGAGTACAGCGCCCGTTTTCAGGGCTAACGTCAGAAgg    <  1:5041910/68‑1 (MQ=255)
                                                               tttCCGGCGTCAGTTTGGTCTGACTCCTGGAGAGTACAGCGCCCGTTTTCAGGGCTAACGTCAGAAgg    <  1:3012275/68‑1 (MQ=255)
                                                               tttCCGGCGTCAGTTTGGTCTGACGCCGGGAGAGTACAGCGCCCGTTTTCAGGGCTAACGTCAGAAgg    <  1:27605474/68‑1 (MQ=255)
                                                               tttCCGGCGTCAGTTTGGTCTGACGCCGGGAGAGTACAGCGCCCGTTTTCAGGGCTAACGTCAGAAgg    <  1:30997783/68‑1 (MQ=255)
                                                               ctcCCGGCGTCAGTTTGGTCTGACGCCGGGAG‑‑TACAGCGCCCGTTTTCAGGGCTAACGTCAGAAGGtt  <  1:26037224‑M1/65‑1 (MQ=255)
                                                                 tCCGGCGTCAGTTTGGTCTGACGCCGGGAGAGTACAGCGCCCGTTTTCAGGGCTAACGTCAGAAGGtt  <  1:27336181/68‑1 (MQ=255)
                                                                 cCCGGCGTCAGTTTGGTCTGCCGCCGGGAGAGTACAGCGCCCGGTTTCAGGGCTAACGTCAGAAGGtt  <  1:7219687‑M1/67‑1 (MQ=255)
                                                                  |                                                                  
TCTGTCAATTCATGAAGTGGCACAGCGTTGCGGTTTTCCGGATAGCGACTATTTTTGTCGCGTTTTCCGGCGTCAGTTTGGTCTGACGCCGGGAGAGTACAGCGCCCGTTTTCAGGGCTAACGTCAGAAGGTT  >  CP009273/2495346‑2495478

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.