New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 2495412 =241 (0.630)8 (0.030) 4/92 NT 5.0% coding (804/858 nt) ypdC putative DNA‑binding protein
?CP009273 2495438 = 105 (0.330)coding (830/858 nt) ypdC putative DNA‑binding protein

Only 100 of 278 total aligned reads displayed.

CGTTGCGGTTTTCCGGATAGCGACTATTTTTGTCGCGTTTTCCGGCGTCAGTTTGGTCTGACGCCGGGAGAGTACAGCGCCCGTTTTCAGGGCTAACGTCAGAAGGTTAATTCTGTTTCCAGCAGCGTCAGGAT  >  CP009273/2495371‑2495504
                                                                   |                                                                  
cGTTGCGGTTTTCCGGATAGCGACTATTTTTGTCGCGTTTTCCGGCGTCAGTTTGGTCTGACGCCggg                                                                    >  1:14778980/1‑68 (MQ=255)
cGTTGCGGTTTTCCGGATAGCGACTATTTTTGTCGCGTTTTCCGGCGTCAGTTTGGTCTGACGCCggg                                                                    >  1:25791398/1‑68 (MQ=255)
cGTTGCGGTTTTCCGGATAGCGACTATTTTTGTCGCGTTTTCCGGCGTCAGTTTGGTCTGACGCCggg                                                                    >  1:23413439/1‑68 (MQ=255)
aaccttctgccgttagccctgaaaacgggcgctgtactctcccggcgtcagaccaaactgacgccggg                                                                    <  1:29846143‑M2/1‑1 (MQ=255)
aaccttctgacgttagccctgaaaccgggcgctgtactctcccggcggcagaccaaactgacgccggg                                                                    <  1:7219687‑M2/1‑1 (MQ=255)
aaccttctgacgttagccctgaaaacgggcgctgtactctcccggcgtcagaccaaactgccgccggg                                                                    <  1:21155151‑M2/1‑1 (MQ=255)
aaccttctgacgttagccctgaaaacgggcgctgtactctcccggcgtcagaccaaactgacgccggg                                                                    <  1:5588971‑M2/1‑1 (MQ=255)
aaccttctgacgttagccctgaaaacgggcgctgtactctcccggcgtcagaccaaactgacgccggg                                                                    <  1:10859377‑M2/1‑1 (MQ=255)
 gtggCGGTTTTCCGGATAGCGACTATTTTTGGCGCGTTATCCGGCGTCAGTTTGGGCTGACGCCggg                                                                    <  1:14603057/64‑1 (MQ=255)
 gatGCGGTTTTCCGGATAGCGACTATTTTTGTCGCGTTTTCCGGCGTCAGTTTGGTCTGACGCCggg                                                                    <  1:10062521/65‑1 (MQ=255)
 gTTGCGGTTTTCCGGATAGCGACTATTTTTGTCGCGTTTTCCGGCGTCAGTTTGGTCTGACGCCggg                                                                    <  1:2782153/67‑1 (MQ=255)
 gTTGCGGTTTTCCGGATAGCGACTATTTTTGTCGCGTTTTCCGGCGTCAGTTTGGTCTGACGCCggg                                                                    <  1:29548150/67‑1 (MQ=255)
 gTTGCGGTTTTCCGGATAGCGACTATTTTTGTCGCGTTTTCCGGCGTCAGTTTGGTCTGACGCCggg                                                                    <  1:20570996/67‑1 (MQ=255)
 gTTGCGGTTTTCCGGATAGCGACTATTTTTGTCGCGTTTTCCGGCGTCAGTTTGGTCTGACGCCggg                                                                    <  1:943260/67‑1 (MQ=255)
 gTTGCGGTTTTCCGGATAGCGACTATTTTTGTCGCGTTTTCCGGCGTCAGTTTGGTCTGACGCCggg                                                                    <  1:4023728/67‑1 (MQ=255)
 gTTGCGGTTTTCCGGATAGCGACTATTTTTGTCGCGTTTTCCGGCGTCAGTTTGGTCTGACGCCggg                                                                    <  1:28407163/67‑1 (MQ=255)
 gTTGCGGTTTTCCGGATAGCGACTATTTTTGTCGCGTTTTCCGGCGTCAGTTTGGTCTGACGCCggg                                                                    <  1:22340378/67‑1 (MQ=255)
 gTTGCGGTTTTCCGGATAGCGACTATTTTTGTCGCGTTTTCCGGCGTCAGTTTGGTCTGACGCCggg                                                                    <  1:9262209/67‑1 (MQ=255)
 gTTGCGGTTTTCCGGATAGCGACTATTTTTGTCGCGTTTTCCGGCGTCAGTTTGGTCTGACGCCggg                                                                    <  1:26570794/67‑1 (MQ=255)
 gTTGCGGTTTTCCGGATAGCGACTATTTTTGTCGCGTTTTCCGGCGTCAGTTTGGTCTGACGCCggg                                                                    <  1:8603911/67‑1 (MQ=255)
 gTTGCGGTTTTCCGGATAGCGACTATTTTTGTCGCGTTTTCCGGCGTCAGTTTGGTCTGACGCCGGga                                                                   >  1:2241971/1‑68 (MQ=255)
  ccttctgacgttagccctgaaaacgggcgctgtactctcccggcgtcagaccaaactgacgccgggag                                                                  <  1:31882346‑M2/3‑1 (MQ=255)
   tGCGGTTTTCCGGATAGCGACTATTTTTGTCGCGTTTTCCGGCGTCAGTTTGGTCTGACGCCGGgag                                                                  <  1:623995/67‑1 (MQ=255)
   tGCGGTTTTCCGGATAGCGACTATTTTTGTCGCGTTTTCCGGCGTCAGTTTGGTCTGACGCCGGgag                                                                  <  1:7504866/67‑1 (MQ=255)
   tGCGGTTTTCCGGATAGCGACTATTTTTGTCGCGTTTTCCGGCGTCAGTTTGGTCTGACGCCGGgag                                                                  <  1:11767281/67‑1 (MQ=255)
   tGCGGTTTTCCGGATAGCGACTATTTTTGTCGCGTTTTCCGGCGTCAGTTTGGTCTGACGCCGGgag                                                                  <  1:1239280/67‑1 (MQ=255)
   tGCGGTTTTCCGGATAGCGACTATTTTTGTCGCGTTTTCCGGCGTCAGTTTGGTCTGACGCCGGgag                                                                  <  1:19437085/67‑1 (MQ=255)
   tGCGGTTTTCCGGATAGCGACTATTTTTGTCGCGTTTTCCGGCGTCAGTTTGGTCTGACGCCGGgag                                                                  <  1:26467909/67‑1 (MQ=255)
   cttctgacgttagccctgaaaacgggcgctgtactctcccggcgtcagaccaaactgacgccgggaga                                                                 <  1:11311943‑M2/4‑1 (MQ=255)
   cttctgacgttagccctgaaaacgggcgctgtactctcccggcgtcagaccaaactgacgccgggaga                                                                 <  1:4251057‑M2/4‑1 (MQ=255)
   cttctgacgttagccctgaaaacgggcgctgtactctcccggcgtcagaccaaactgacgccgggaga                                                                 <  1:28991121‑M2/4‑1 (MQ=255)
    gCGGTTTTCCGGATAGCGACTATTTTTGTCGCGTTTTCCGGCGTCAGTTTGGTCTGACGCCGGGagag                                                                <  1:31997031/68‑1 (MQ=255)
    gCGGTTTTCCGGATAGCGACTATTTTTGTCGCGTTTTCCGGCGTCAGTTTGGTCTGACGCCGGGagag                                                                >  1:19272801/1‑68 (MQ=255)
     tctgacgttagccctgaaaacgggcgctgtactctcccggcgtcagaccaaactgacgccggGAGAGt                                                               <  1:14223613‑M2/6‑1 (MQ=255)
     tctgacgttagccctgaaaacgggcgctgtactctcccggcgtcagaccaaactgacgccggGAGAGt                                                               <  1:29755717‑M2/6‑1 (MQ=255)
      ggTTTTCCGGATAGCGACTATTTTTGTCGCGTTTTCCGGCGTCAGTTTGGTCTGACGCCGGGAGAGt                                                               >  1:30211681/1‑67 (MQ=255)
      ggTTTTCCGGATAGCGACTATTTTTGTCGCGTTTTCCGGCGTCAGTTTGGTCTGACGCCGGGAGAGt                                                               >  1:21111485/1‑67 (MQ=255)
      ggTTTTCCGGATAGCGACTATTTTTGTCGCGTTTTCCGGCGTCAGTTTGGTCTGACGCCGGGAGAGt                                                               <  1:26340330/67‑1 (MQ=255)
      ggTTTTCCGGATAGCGACTATTTTTGTCGCGTTTTCCGGCGTCAGTTTGGTCTGACGCCGGGAGAGt                                                               >  1:7227579/1‑67 (MQ=255)
      ggTTTTCCGGATAGCGACTATTTTTGTCGCGTTTTCCGGCGTCAGTTTGGTCTGACGCCGGGAGAGTa                                                              <  1:14218774/68‑1 (MQ=255)
      ggTTTTCCGGATAGCGACTATTTTTGTCGCGTTTTCCGGCGTCAGTTTGGTCTGACGCCGGGAGAGTa                                                              <  1:4464797/68‑1 (MQ=255)
      ggTTTTCCGGATAGCGACTATTTTTGTCGCGTTTTCCGGCGTCAGTTTGGTCTGACGCCGGGAGAGTa                                                              <  1:4766862/68‑1 (MQ=255)
      ggTTTGCCGGATAGCGACTATTTTTGTCGCGTTTTCCGGCGTCAGTTTGGTCTGACGCCGGGAGAGTa                                                              <  1:9116448/68‑1 (MQ=255)
         tttCCGGATAGCGACTATTTTTGTCGCGTTTTCCGGCGTCAGTTTGGTCTGCCGCCGGGAGTGTACa                                                            >  1:1680054/1‑67 (MQ=255)
         tttCCGGATAGCGACTATTTTTGTCGCGTTTTCCGGCGTCAGACCAAACTGACGCCGGGAGAGTACa                                                            >  1:17074674/1‑67 (MQ=21)
           gttagccctgaaaacgggcgctgtactctcCCGGCGGCAGTTTGGTCTGGCGGCGGGTGCGTGCAgcg                                                         <  1:23316294‑M1/38‑1 (MQ=255)
            ttagccctgaaaacgggcgctgtactctcCCGGCGTCAGTTTGGTCTGCCGCCGGGGGAGTACcgcg                                                         <  1:21606433‑M1/38‑1 (MQ=255)
            ttagccctgaaaacgggcgctgtactctcCCGGCGTCAGTTTGGTCTGCCGCCGGGAGAGTTCAgcg                                                         <  1:28934874‑M1/38‑1 (MQ=255)
            ttagccctgaaaacgggcgctgtactctcCCGGCGTCAGTTTGGTCTGACGCCGGGAGAGTACAgcg                                                         <  1:28846835‑M1/38‑1 (MQ=255)
             cGGATAGCGACTATTTTTGTCGCGTTTTCCGGCGTCAGTTTGGTCTGACGCCGGGAGAGTACAGCGcc                                                       <  1:25048146/68‑1 (MQ=255)
             cGGATAGCGACTATTTTTGTCGCGTTTTCCGGCGTCAGTTTGGTCTGACGCCGGGAGAGTACAGCGcc                                                       <  1:9818327/68‑1 (MQ=255)
             cGGATAGCGACTATTTTTGTCGCGTTTTCCGGCGTCAGTTTGGTCTGACGCCGGGAGAGTACAGCGcc                                                       <  1:13138754/68‑1 (MQ=255)
                aTAGCGACTATTTTTGTCGCGTTTTCCGGCGTCAGTTTGGTCTGACGCCGGGAGAGTACAGCGCCCg                                                     <  1:13648050/67‑1 (MQ=255)
                aTAGCGACTATTTTTGTCGCGTTTTCCGGCGTCAGTTTGGTCTGACGCCGGGAGAGTACAGCGCCCGt                                                    >  1:16063139/1‑68 (MQ=255)
                aTAGCGACTATTTTTGTCGCGTTTTCCGGCGTCAGTTTGGTCTGACGCCGGGAGAGTACAGCGCCCGt                                                    >  1:5808737/1‑68 (MQ=255)
                aTAGCGACTATTTTTGTCGCGTTTTCCGGCGTCAGACCAAACTGACGCCGGGAGAGTACAGCGCCCGt                                                    >  1:21088312/1‑68 (MQ=21)
                 tAGCGACTATTTTTGTCGCGTTTTCCGGCGTCAGTTTGGTCTGACGCCGGGAGAGTACAGCGCCCGtt                                                   <  1:31725293/68‑1 (MQ=255)
                  aGCGACTATTTTTGTCGCGTTTTCCGGCGTCAGTTTGGTCTGACGCCGGGAGAGTACAGCGCCCGttt                                                  <  1:10262850/68‑1 (MQ=255)
                  aGCGACTATTTTTGTCGCGTTTTCCGGCGTCAGTTTGGTCTGACGCCGGGAGAGTACAGCGCCCGttt                                                  <  1:27421095/68‑1 (MQ=255)
                      aCTATTTTTGTCGCGTTTTCCGGCGTCAGTTTGGTCTGACGCCGGGAGAGTACAGCGCCCGTTTTCAg                                              >  1:31073375/1‑68 (MQ=255)
                      aCTATTTTTGTCGCGTTTTCCGGCGTCAGTTTGGTCTGACGCCGGGAGAGTACAGCGCCCGTTTTCAg                                              >  1:18230841/1‑68 (MQ=255)
                        tttttttGTCGCGTTTTCCGGCGTCAGTTTGGTCTGACGCCGGGAGAGTACAGCGCCCGTTTTCAggg                                            <  1:11929879/66‑1 (MQ=255)
                        tATTTTTGTCGCGTTTTCCGGCGTCAGTTTGGTCTGACGCCGGGAGAGTACAGCGCCCGTTTTCCggg                                            <  1:23120268/68‑1 (MQ=255)
                         aTTTTTGTCGCGTTTTCCGGCGTCAGTTTGGTCTGACGCCGGGAGAGTACAGCGCCCGTTTTCAGGGc                                           <  1:16694547/68‑1 (MQ=255)
                            tttGTCGCGTTTTCCGGCGTCAGTTTGGTCTGACGCCGGGAGAGTACAGCGCCCGTTTTCAGGGCTaa                                        <  1:25512358/68‑1 (MQ=255)
                              tGTCGCGTTTTCCGGCGTCAGTTTGGTCTGACGCCGGGAGAGTACAGCGCCCGTTTTCAGGGCTAACg                                      <  1:29168140/68‑1 (MQ=255)
                              tGTCGCGTTTTCCGGCGTCAGTTTGGTCTGACGCCGGGAGAGTACAGCGCCCGTTTTCAGGGCTAACg                                      <  1:21752782/68‑1 (MQ=255)
                              tGTCGCGTTTTCCGGCGTCAGTTTGGTCTGACGCCGGGAGAGTACAGCGCCCGTTTTCAGGGCTAACg                                      <  1:10478943/68‑1 (MQ=255)
                              tGTCGCGTTTTCCGGCGTCAGTTTGGTCTGACGCCGGGAGAGTACAGCGCCCGTTTTCAGGGCTAACg                                      >  1:24378645/1‑68 (MQ=255)
                              tGTCGCGTTTTCCGGCGTCAGTTTGGTCTGACGCCGGGAGAGTACAGCGCCCGTTTTCAGGGCTAACg                                      <  1:26167518/68‑1 (MQ=255)
                              tGTCGCGTTTTCCGGCGTCAGTTTGGTCTGACGCCGGGAGAGAACAGCGCCCGTTTTCAGGGCTAACg                                      >  1:21976078/1‑68 (MQ=255)
                                    ctctcCCGGCGTCAGTTTGGTCTGACGCCGGGAGAGTACAGCGCCCGTTTTCAGGGCGAACGTCAGaa                                <  1:15229791‑M1/63‑1 (MQ=255)
                                      tttCCGGCGTCAGTTTTGTCTGACGCCGGGAGAGTACAGCGCCCGTTTTCAGGGCTAACGTCAGAAgg                              <  1:5041910/68‑1 (MQ=255)
                                      tttCCGGCGTCAGTTTGGTCTGACGCCGGGAGAGTACAGCGCCCGTTTTCAGGGCTAACGTCAGAAgg                              <  1:673864/68‑1 (MQ=255)
                                      tttCCGGCGTCAGTTTGGTCTGACGCCGGGAGAGTACAGCGCCCGTTTTCAGGGCTAACGTCAGAAgg                              <  1:3476634/68‑1 (MQ=255)
                                      tttCCGGCGTCAGTTTGGTCTGACGCCGGGAGAGTACAGCGCCCGTTTTCAGGGCTAACGTCAGAAgg                              <  1:31601565/68‑1 (MQ=255)
                                      tttCCGGCGTCAGTTTGGTCTGACGCCGGGAGAGTACAGCGCCCGTTTTCAGGGCTAACGTCAGAAgg                              <  1:27605474/68‑1 (MQ=255)
                                      attCCGGCGTCAGTTTGGTCTGACGCCGGGAGAGTACAGCGCCCGTTTTCAGGGCTAACGTCAGAAgg                              <  1:18797195/67‑1 (MQ=255)
                                        tCCGGCGTCAGTTTGGTCTGACGCCGGGAGAGTACAGCGCCCGTTTTCAGGGCTAACGTCAGAAGGtt                            <  1:27336181/68‑1 (MQ=255)
                                        cCCGGCGTCAGTTTGGTCTGACGCCGGGAGAGTACAGCGCCCGTTTTCAGGGCTAACGTCAGaagggt                            <  1:20192415‑M1/67‑3 (MQ=255)
                                          CGGCGTCAGTTTGGTCTGCCGCCGGGAGAGTACAGCGCCCGTTTTCAGGGCTAACGTCAGAAGGTTaa                          <  1:5312358‑M1/68‑1 (MQ=255)
                                           GGCGTCAGTTTGGTCTGACGCCGGGAGAGTACAGCGCCCGTTTTCAGGGCTAACGTCAGAAGGTTAAt                         >  1:17813811‑M1/1‑68 (MQ=255)
                                           GGCGTCAGTTTGGTCTGACGCCGGGAGAGTACAGCGCCCGTTTTCAGGGCTAACGTCAGAAGGTTAAt                         >  1:19540038‑M1/1‑68 (MQ=255)
                                             CGTCAGTTTGGTCTGACGCCGGGAGAGTACAGCGCCCGTTTTCAGGGCTAACGTCAGAAGGTTAAt                         <  1:27104376‑M1/66‑1 (MQ=255)
                                               TCAGTTTGGTCTGACGCCGGGAGAGTACAGCGCCCGTTTTCAGGGCTAACGTCAGAAGGTTAAt                         <  1:15702153‑M1/64‑1 (MQ=255)
                                                CAGTTTGGTCTGACGCCGGGAGAGTACAGCGCCCGTTTTCAGGGCTAACGTCAGAAGGTTAATTCTGt                    >  1:30620807‑M1/1‑68 (MQ=255)
                                                    ttGGTCTGACGCCGGGAGAGTACAGCGCCCGTTTTCAGGGCTAACGTCAGAAGGTTAATTCTGttt                  <  1:31104095/66‑1 (MQ=255)
                                                    ttGGTCTGACGCCGGGAGAGTACAGCGCCCGTTTTCAGGGCTAACGTCAGAAGGTTAATTCTGttt                  <  1:24708926/66‑1 (MQ=255)
                                                    ttGGTCTGACGCCGGGAGAGTACAGCGCCCGTTTTCAGGGCTAACGTCAGAAGGTTAATTCTGttt                  <  1:19615703/66‑1 (MQ=255)
                                                        tCTGACGCCGGGAGAGTACAGCGCCCGTTTTCAGGGCTAACGTCAGAAGGTTAATTCTGTTTCcagca            >  1:30964042/1‑68 (MQ=255)
                                                        tCTGACGCCGGGAGAGTACAGCGCCCGTTTACCGGGCTAACGTCAGAAGGTTAATTCTGTTTccacca            >  1:8230413/1‑68 (MQ=255)
                                                         ctgacgccggGAGAGTACAGCGCCCGTTTTCAGGGCTAACGTCAGAAGGTTAATTCTGTTTCcagca            >  1:11461669‑M2/11‑67 (MQ=255)
                                                         ctgacgccggGAGAGTACAGCGCCCGTTTTCAGGGCTAACGTCAGAAGGTTAATTCTGTTTCcagca            >  1:17430142‑M2/11‑67 (MQ=255)
                                                         ctgacgccggGAGAGTACAGCGCCCGTTTTCAGGGCTAACGTCAGAAGGTAAATTCTGTTTCcagca            >  1:12771570‑M2/11‑67 (MQ=255)
                                                              gccggGAGAGTACAGCGCCCGTTTTCAGGGCTAACGTCAGAAGGTTAATTCTGTTTCCAGCAGCGTCa      >  1:2185‑M2/6‑68 (MQ=255)
                                                              gccggGAGAGTACAGCGCCCGTTTTCAGGGCTAACGTCAGAAGGTTAATTCTGTTTCCAGCAGCGTCa      >  1:2025306‑M2/6‑68 (MQ=255)
                                                                cggGAGAGTACAGCGCCCGTTTTCAGGGCTAACGTCAGAAGGTTAATTCTGTTTCCAGCAGCGTCAgg    <  1:1714824‑M2/65‑1 (MQ=255)
                                                                cggGAGAGTACAGCGCCCGTTTTCAGGGCTAACGTCAGAAGGTTAATTCTGTTTCCAGCAGCGTCAg     <  1:24038592‑M2/64‑1 (MQ=255)
                                                                  gGAGAGTACAGCGCCCGTTTTCAGGGCTAACGTCAGAAGGTTAATTCTGTTTCCAGCAGCGTCAGGAt  >  1:8022771‑M2/2‑68 (MQ=255)
                                                                  gGAGAGTACAGCGCCCGTTTTCAGGGCTAACGTCAGAAGGTTAATTCTGTTTCCAGCAGCGTCAGGAt  >  1:10708875‑M2/2‑68 (MQ=255)
                                                                   |                                                                  
CGTTGCGGTTTTCCGGATAGCGACTATTTTTGTCGCGTTTTCCGGCGTCAGTTTGGTCTGACGCCGGGAGAGTACAGCGCCCGTTTTCAGGGCTAACGTCAGAAGGTTAATTCTGTTTCCAGCAGCGTCAGGAT  >  CP009273/2495371‑2495504

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.