| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 2640581 | 260 (0.680) | 13 (0.040) | 7/98 | NT | 5.2% | coding (104/2313 nt) | pbpC | penicillin‑insensitive murein repair transglycosylase; inactive transpeptidase domain |
| ? | CP009273 | = 2640609 | 251 (0.750) | coding (76/2313 nt) | pbpC | penicillin‑insensitive murein repair transglycosylase; inactive transpeptidase domain | |||||
Only 100 of 436 total aligned reads displayed.
GGCGAAGCGCCAGAGCGGCGTACCATCCTGCGCCACGACCACTCGTGCGGGATTGACTTCATGCAGCGGTAGAGGCCAGAGTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAAC > CP009273/2640514‑2640646 | ggCGAAGCGCCAGAGCGGCGTACCATCCTGCGCCACGACCACTCGTGCGGGATTGACTTCATGCAGCG > 1:17918370‑M1/1‑68 (MQ=255)ggCGAAGCGCCAGAGCGGCGTACCATCCTGCGCCACGACCACTCGTGCGGGATTGACTTCATGCAGCG < 1:19240245‑M1/68‑1 (MQ=255) gAAGCGCCAGAGCTGCGTACCATCCTGCGCCACGACGACTCGGGCGGGATTGACTTCATGCAGCGGt < 1:28627902/67‑1 (MQ=255) gAAGCGCCAGAGCGGCGTACCATCCTGCGCCACGACCACTCGTGCGGGATTGACTTCATGCAGCGGt < 1:26673249/67‑1 (MQ=255) gAAGCGCCAGAGCGGCGTACCATCCTGCGCCACGACCACTCGTGCGGGATTGACTTCATGCAGCGGt < 1:11139564/67‑1 (MQ=255) gAAGCGCCAGAGCGGCGTACCATCCTGCGCCACGACCACTCGTGCGGGATTGACTTCATGCAGCGGt < 1:11209371/67‑1 (MQ=255) gAAGCGCCAGAGCGGCGTACCATCCTGCGCCACGACCACTCGTGCGGGATTGACTTCATGCAGCGGt < 1:5710424/67‑1 (MQ=255) cgcCAGAGCGGCGTACCATCCTGCGCCACGACCCCTCGTGCGGGATTGACTTCATGCAGCGGTagag > 1:3150260/1‑67 (MQ=255) cgcCAGAGCGGCGTACCATCCTGCGCCACGACCACTCGTGCGGGATTGACTTCATGCAGCGGTagag > 1:4176671/1‑67 (MQ=255) gcCAGAGCGGCGTACCATCCTGCGCCACGACCACTCGTGCGGGATTGACTTCATGCAGCGGTAGAgg < 1:5812983/67‑1 (MQ=255) gcCAGAGCGGCGTACCATCCTGCGCCACGACCACTCGTGCGGGATTGACTTCATGCAGCGGTAGAgg < 1:11655620/67‑1 (MQ=255) gcCAGAGCGGCGTACCATCCTGCGCCACGACCACTCGTGCGGGATTGACTTCATGCAGCGGTAGAgg < 1:7708553/67‑1 (MQ=255) gcCAGAGCGGCGTACCATCCTGCGCCACGACCACTCGTGCGGGATTGACTTCATGCAGCGGTAGAgg < 1:25886505/67‑1 (MQ=255) gcCAGAGCGGCGTACCATCCTGCGCCACGACCACTCGTGCGGGATTGACTTCATGCAGCGGTAGAgg < 1:26492886/67‑1 (MQ=255) agCGGCGTACCATCCTGCGCCACGACCACTCGTGCGGGATTGACTTCATGCAGCGGTAGAGGCCagag > 1:7458871/1‑68 (MQ=255) gcggcgTACCATCCTGCGCCACGACCACTCGTGCGGGATTGACTTCATGCAGCGGTAGAGGCCaga < 1:10382069/66‑1 (MQ=255) gcggcgTACCATCCTGCGCCACGACCACTCGTGCGGGATTGACTTCATGCAGCGGTAGAGGCCaga < 1:6433625/66‑1 (MQ=255) gcggcgTACCATCCTGCGCCACGACCACTCGTGCGGGATTGACTTCATGCAGCGGTAGAGGCCaga < 1:9076112/66‑1 (MQ=255) gcggcgTACCATCCTGCGCCACGACCACTCGTGCGGGATTGACTTCATGCAGCGGTAGAGGCCaga < 1:19979497/66‑1 (MQ=255) gcggcgTACCATCCTGCGCCACGACCACTCGTGCGGGATTGACTTCATGCAGCGGTAGAGGCCaga < 1:25516931/66‑1 (MQ=255) gcggcgTACCATCCTGCGCCACGACCACTCGTGCGGGATTGACTTCATGCAGCGGTAGAGGCCaga < 1:8150421/66‑1 (MQ=255) gcggcgTACCATCCTGCGCCACGACCACTCGTGCGGGATTGACTTCATGCAGCGGTAGAGGCCaga < 1:26976872/66‑1 (MQ=255) gcggcgTACCATCCTGCGCCACGACCACTCGTGCGGGATTGACTTCATGCAGCGGTAGAGGCCaga < 1:4933000/66‑1 (MQ=255) ggcgTACCATCCTGCGCCACGACCACTCGTGCGGGATTGACTTCATGCAGCGGTAGAGGCCAGAGttt > 1:21257722/1‑68 (MQ=255) ggcgTACCATCCTGCGCCACGACCACTCGTGCGGGATTGACTTCATGCAGCGGTAGAGGCCAGAGt < 1:27369758/66‑1 (MQ=255) cgTACCATCCTGCGCCACGACCACTCGTGCGGGATTGACTTCATGCAGCGGTAGAGGCCAGAGTTTa < 1:9615850/67‑1 (MQ=255) cgTACCATCCTCCGCCACGACCACTCGTGCGGGATTGACTTCATGCAGCGGTAGAGGCCAGAGTTTa < 1:11830917/67‑1 (MQ=255) aCCATCCTGCGCCACGCCCACTCGTGCGGGATTGACTTCATGCAGCGGTAGAGGCCAGAGTTTATCt > 1:24113071/1‑67 (MQ=255) aCCATCCTGCGCCACGACCACTCGTGCGGGATTGACTTCATGCAGCGtggggagcagataaactctgg < 1:12034818‑M1/68‑22 (MQ=255) aCCATCCTGCGCCACGACCACTCGTGCGGGATTGACTTCATGCAGCGGTAGAGGCCAGAGTTTATCt > 1:14351369/1‑67 (MQ=255) aCCATCCTGCGCCACGACCACTCGTGCGGGATTGACTTCATGCAGCGGTAGAGGCCAGAGTTTATCt < 1:3689415/67‑1 (MQ=255) ccATCCTTCGCCACGACCACTAGTGCGGGATTGATATCATGCAGCGGCAGAGGACAGAGTTTATCTGc < 1:23240984/68‑1 (MQ=255) ccATCCTGCGCCACGACCACTCGTGCGGGATTGACTTCATGCAGCGGTAGAGGCCAGAGTTTATCTGc < 1:19454912/68‑1 (MQ=255) ccATCCTGCGCCACGACCACTCGTGCGGGATTGACTTCATGCAGCGGTAGAGGCCAGAGTTTATCTGc < 1:6648077/68‑1 (MQ=255) aTCCTGCGCCACGACCACTCGTGCGGGATTGACTTCATGCAGCGGTAGAGGCCAGAGTTTATCTGCt > 1:13211575/1‑67 (MQ=255) aTCCTGCGCCACGACCACTCGTGCGGGATTGACTTCATGCAGCGGTAGAGGCCAGAGTTTATCTGCt > 1:26323866/1‑67 (MQ=255) aTCCTGCGCCACGACCACTCGTGCGGGATTGACTTCATGCAGCGGTAGAGGCCAGAGTTTATCTGCTc < 1:9231012/68‑1 (MQ=255) aTCCTGCGCCACGACCACTCGTGCGGGATTGACTTCATGCAGCGGTAGAGGCCAGAGTTTATCTGCTc < 1:17284346/68‑1 (MQ=255) ccTGCGCCACGACCACTCGTGCGGGATTGACTTCATGCAGCGGTAGAGGCCAGAGTTTATCTGCTcc > 1:19638616/1‑67 (MQ=255) ccTGCGCCACGACCACTCGTGCGGGATTGACTTCATGCAGCGGTAGAGGCCAGAGTTTATCTGCTcc > 1:14702302/1‑67 (MQ=255) cTGCGCCACGACCACTCGTGCGGGATTGACTTCATGCAGCGGTAGAGGCCAGAGTTTATCTGCTcccc < 1:13932473/68‑1 (MQ=255) gcgcCACGACCACTCGTGCGGGATTGACTTCATGCAGCGGTAGAGGCCAGAGTTTATCTGCTCCCCAc > 1:17582876‑M2/1‑67 (MQ=255) gcCACGACCACTCGTGCGGGATTGACTTCATGCAGCGGTAGAGGCCAGAGTTTATCTGCTCCCCAc < 1:8704858‑M2/66‑2 (MQ=255) gcCACGACCACTCGTGCGGGATTGACTTCATGCAGCGGTAGAGGCCAGAGTTTATCTGCTCCCCAc < 1:28388930‑M2/66‑2 (MQ=255) gcCACGACCACTCGTGCGGGATTGACTTCATGCAGCGGTAGAGGCCAGAGTTTATCTGCTCCCCAc < 1:12927848‑M2/66‑2 (MQ=255) gcCACGACCACTCGTGCGGGATTGACTTCATGCAGCGGTAGAGGCCAGAGTTTATCTGCTCCCCAc < 1:24958684‑M2/66‑2 (MQ=255) gcCACGACCACTCGTGCGGGATTGACTTCATGCAGCGGTAGAGGCCAGAGTTTATCTGCTCCCCAc < 1:24228260‑M2/66‑2 (MQ=255) gcCACGACCACTCGTGCGGGATTGACTTCATGCAGCGGTAGAGGCCAGAGTTTATCTGCTCCCCAc < 1:15201516‑M2/66‑2 (MQ=255) gcCACGACCACTCGTGCGGGATTGACTTCATGCAGCGGTAGAGGCCAGAGTTTATCTGCTCCCCAc < 1:23606380‑M2/66‑2 (MQ=255) gcCACGACCACTCGTGCGGGATTGACTTCATGCAGCGGTAGAGGCCAGAGTTTATCTGCTCCCCAc < 1:11449621‑M2/66‑2 (MQ=255) gcCACGACCACTCGTGCGGGATTGACTTCATGCAGCGGTAGAGGCCAGAGTTTATCTGCTCCCCAc < 1:6193052‑M2/66‑2 (MQ=255) gcCACGACCACTCGTGCGGGATTGACTTCATGCAGAGGTAGAGGCCAGTGTTTATCTGCTCCCCAc < 1:3564996‑M2/66‑2 (MQ=255) ccACGACCACTCGTGCGGGATTGACTTCATGCAGCGGTAGAGGCCAGAGTTTATCTGCTCCCCAc < 1:8239563‑M2/65‑2 (MQ=255) cACGACCACTCGTGCGGGATTGACTTCATGCAGCGGTAGAGGCCAGAGTTTATCTGCTCCCCAcgct > 1:30489755‑M2/1‑63 (MQ=255) cACGACCACTCGTGCGGGATTGACTTCATGCAGCGGTAGAGGCCAGAGTTTATCTGCTCCCCAcgct > 1:25226712‑M2/1‑63 (MQ=255) aCGACCACTCGTGCGGGATTGACTTCATGCAGCGGTAGAGGCCAGAGTTTATCTGCTCCCCAcgctgc > 1:11628572‑M2/1‑62 (MQ=255) ccACTCGTGCGGGATTGACTTCATGCAGCGGTAGAGGCCAGAGTTTAt > 1:26403758/1‑48 (MQ=255) ccACTCGTGCGGGATTGACTTCATGCAGCGGTAGAGGCCAGAGTTTATCTGCTCCCCACGCTGCAAg < 1:15950346/67‑1 (MQ=255) ccACTCGTGCGGGATTGACTTCATGCAGCGGTAGAGGCCAGAGTTTATCTGCTCCCCACGCTGCAAg < 1:20703971/67‑1 (MQ=255) cACTCGTGCGGGATTGACTTCATGCAGCGGTAGAGGCCAGAGTTTATCTGCTCCCCACGCTGCAAGaa < 1:20545172/68‑1 (MQ=255) cTCGTGCGGGATTGACTTCATGCAGCGGTAGAGGCCAGAGTTTATCTGCTCCCCACGCTGCAAGaaaa > 1:1849072/1‑68 (MQ=255) cTCGTGCGGGATTGACTTCATGCAGCGGTAGAGGCCAGAGTTTATCTGCTCCCCACGCTGCAAGaaaa > 1:12492377/1‑68 (MQ=255) cGTGCGGGATTGACTTCATGCAGCGGTAGAGGCCAGAGTTTATCTGCTCCCCACGCTGCAAGAAAAAg > 1:14086315/1‑68 (MQ=255) cGTGCGGGATTGACTTCATGCAGCGGTAGAGGCCAGAGTTTATCTGCTCCCCACGCTGCAAGAAAAAg < 1:7022979/68‑1 (MQ=255) gCGGGATTGACTTCATGCAGCGGTAGAGGCCAGAGTTTATCTGCTCCCCACGCTGCAAGAAAAAGga < 1:22443653/67‑1 (MQ=255) gggATTGACTTCATGCAGCGGTAGAGGCCAGAGTTTGTCTGCTCCCCACGCTGCAAGAAAAAGGAGaa > 1:22030941/1‑68 (MQ=255) gggATTGACTTCATGCAGCGGTAGAGGCCAGAGTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGaa > 1:4459941/1‑68 (MQ=255) gggATTGACTTCATGCAGCGGTAGAGGCCAGAGTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGaa > 1:16623001/1‑68 (MQ=255) gggATTGACTTCATGCAGCGGTAGAGGCCAGAGTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGaa > 1:15100819/1‑68 (MQ=255) cTTCATGCAGCGGTAGAGGCCAGAGTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGcgcg > 1:1626961/1‑68 (MQ=255) cTTCATGCAGCGGTAGAGGCCAGAGTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGcgcg < 1:9009929/68‑1 (MQ=255) ttCATGCAGCGGTAGAGGCCAGAGTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGcgcg > 1:18230204/1‑67 (MQ=255) tCATGCAGCGGTAGAGGCCAGAGTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGc < 1:3025028/68‑1 (MQ=255) tCATGCAGCGGTAGAGGCCAGAGTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGc < 1:20097852/68‑1 (MQ=255) aTGCAGCGGTAGAGGCCAGAGTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTg < 1:31199154/68‑1 (MQ=255) tGCAGCGGTAGAGGCCAGAGTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGc < 1:589890/68‑1 (MQ=255) gCAGCGtggggagcagataaactctggcctctaccgctgcatgaagtcaatcccgcacgagtggtcgt < 1:12546176‑M1/68‑63 (MQ=255) gCAGCGtggggagcagataaactctggcctctaccgctgcatgaagtcaatcccgcacgagtggtcgt > 1:22687498‑M1/1‑6 (MQ=255) gCAGCGGTAGAGGCCAGAGTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGcc > 1:14811697/1‑68 (MQ=255) gCAGCGGTAGAGGCCAGAGTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGcc > 1:12751669/1‑68 (MQ=255) gCAGCGGTAGAGGCCAGAGTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGcc < 1:20257073/68‑1 (MQ=255) gCAGCGGTAGAGGACAGAGTTTATCTGCTCCCCACGCTCCAAGAAAAAGGAGCAAGGGCTCGGATGcc > 1:12387447/1‑68 (MQ=255) aGCGtggggagcagataaactctggcctctaccgctgcatgaagtcaatcccgcacgagtggtcgtg > 1:29869192‑M1/1‑4 (MQ=255) gCGGTAGAGGCCAGAGTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAAc < 1:10042544/68‑1 (MQ=255) gtggggagcagataaactctggcctctaccgctgcatgaagtcaatcccgcacgagtggtcgtggc < 1:23943629‑M1/66‑66 (MQ=255) gtggggagcagataaactctggcctctaccgctgcatgaagtcaatcccgcacgagtggtcgtggc < 1:24694267‑M1/66‑66 (MQ=255) gtggggagcagataaactctggcctctaccgctgcatgaagtcaatcccgcacgagtggtcgtggc < 1:31153246‑M1/66‑66 (MQ=255) gtggggagcagataaactctggcctctaccgctgcatgaagtcaatcccgcacgagtggtcgtggc < 1:15331537‑M1/66‑66 (MQ=255) gtggggagcagataaactctggcctctaccgctgcatgaagtcaatcccgcacgagtggtcgtggc < 1:10936897‑M1/66‑66 (MQ=255) gtggggagcagataaactctggcctctaccgctgcatgaagtcaatcccgcacgagtggtcgtggc < 1:18762303‑M1/66‑66 (MQ=255) gtggggagcagataaactctggcctctaccgctgcatgaagtcaatcccgcacgagtggtcgtggc < 1:30377900‑M1/66‑66 (MQ=255) gtggggagcagataaactctggcctctaccgctgcatgaagtcaatcccgcacgagtggtcgtggc < 1:1075336‑M1/66‑66 (MQ=255) gtggggagcagataaactctggcctctaccgctgcatgaagtcaatcccgcacgagtggtcgtggc < 1:29059423‑M1/66‑66 (MQ=255) gtggggagcagataaactctggcctctaccgctgcatgaagtcaatcccgcacgagtggtcgtggc < 1:27768505‑M1/66‑66 (MQ=255) gtggggagcagataaactctggcctctaccgctgcatgaagtcaatcccgcacgagtgggcgtggc < 1:20460189‑M1/66‑66 (MQ=255) ggTAGAGGCCAGAGTTTATCTTCGCCCCACGATGCATGAAACAGGAGAAATGGCTCGGCTGCCAAc < 1:30953811/66‑1 (MQ=255) ggTAGAGGCCAGAGTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAAc < 1:23419109/66‑1 (MQ=255) ggTAGAGGCCAGAGTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAAc < 1:4756396/66‑1 (MQ=255) ggTAGAGGCCAGAGTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAAc < 1:23806349/66‑1 (MQ=255) ggTAGAGGCCAGAGTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAAc < 1:21572221/66‑1 (MQ=255) | GGCGAAGCGCCAGAGCGGCGTACCATCCTGCGCCACGACCACTCGTGCGGGATTGACTTCATGCAGCGGTAGAGGCCAGAGTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAAC > CP009273/2640514‑2640646 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |