| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 2640581 | 260 (0.680) | 13 (0.040) | 7/98 | NT | 5.2% | coding (104/2313 nt) | pbpC | penicillin‑insensitive murein repair transglycosylase; inactive transpeptidase domain |
| ? | CP009273 | = 2640609 | 251 (0.750) | coding (76/2313 nt) | pbpC | penicillin‑insensitive murein repair transglycosylase; inactive transpeptidase domain | |||||
Only 100 of 355 total aligned reads displayed.
GCGCCACGACCACTCGTGCGGGATTGACTTCATGCAGCGGTAGAGGCCAGAGTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAG > CP009273/2640543‑2640676 | gcCACGCCCACTCGTGCGGGATTGACTTCATGCAGCGGTAGAGGCCAGAGTTTATCTGCTCCCCAc < 1:20460189‑M2/66‑2 (MQ=255) gcCACGACCACTCGTGCGGGATTGACTTCATGCAGCGGTAGAGGCCAGAGTTTATCTGCTCCCCAc < 1:3631064‑M2/66‑2 (MQ=255) gcCACGACCACTCGTGCGGGATTGACTTCATGCAGCGGTAGAGGCCAGAGTTTATCTGCTCCCCAc < 1:23606380‑M2/66‑2 (MQ=255) gcCACGACCACTCGTGCGGGATTGACTTCATGCAGCGGTAGAGGCCAGAGTTTATCTGCTCCCCAc < 1:6193052‑M2/66‑2 (MQ=255) gcCACGACCACTCGTGCGGGATTGACTTCATGCAGCGGTAGAGGCCAGAGTTTATCTGCTCCCCAc < 1:18762303‑M2/66‑2 (MQ=255) gcCACGACCACTCGTGCGGGATTGACTTCATGCAGCGGTAGAGGCCAGAGTTTATCTGCTCCCCAc < 1:27768505‑M2/66‑2 (MQ=255) gcCACGACCACTCGTGCGGGATTGACTTCATGCAGCGGTAGAGGCCAGAGTTTATCTGCTCCCCAc < 1:29059423‑M2/66‑2 (MQ=255) gcCACGACCACTCGTGCGGGATTGACTTCATGCAGCGGTAGAGGCCAGAGTTTATCTGCTCCCCAc < 1:15331537‑M2/66‑2 (MQ=255) gcCACGACCACTCGTGCGGGATTGACTTCATGCAGCGGTAGAGGCCAGAGTTTATCTGCTCCCCAc < 1:8569177‑M2/66‑2 (MQ=255) gcCACGACCACTCGTGCGGGATTGACTTCATGCAGCGGTAGAGGCCAGAGTTTATCTGCTCCCCAc < 1:311153‑M2/66‑2 (MQ=255) gcCACGACCACTCGTGCGGGATTGACTTCATGCAGCGGTAGAGGCCAGAGTTTATCTGCTCCCCAc < 1:9111852‑M2/66‑2 (MQ=255) gcCACGACCACTCGTGCGGGATTGACTTCATGCAGCGGTAGAGGCCAGAGTTTATCTGCTCCCCAc < 1:12927848‑M2/66‑2 (MQ=255) gcCACGACCACTCGTGCGGGATTGACTTCATGCAGCGGTAGAGGCCAGAGTTTATCTGCTCCCCAc < 1:10936897‑M2/66‑2 (MQ=255) gcCACGACCACTCGTGCGGGATTGACTTCATGCAGCGGTAGAGGCCAGAGTTTATCTGCTCCCCAc < 1:1075336‑M2/66‑2 (MQ=255) cACGACCACTCGTGCGGGATTGACTTCATGCAGCTGTAGTGGCCAGAGTTTATCTGCTCCCCAcgct > 1:20045798‑M2/1‑63 (MQ=255) cACGACCACTCGTGCGGGATTGACTTCATGCAGCGGTAGAGGCCAGAGTTTATCTGCTCCCCAcgct > 1:30489755‑M2/1‑63 (MQ=255) cACGACCACTCGTGCGGGATTGACTTCATGCAGCGGTAGAGGCCAGAGTTTATCTGCTCCCCAcgct > 1:25226712‑M2/1‑63 (MQ=255) cACGACCACTCGTGCGGGATTGACTTCATGCAGCGGTAGAGGCCAGAGTTTATCTGCTCCCCAcgct > 1:11793821‑M2/1‑63 (MQ=255) aCGACCACTCGTGCGGGATTGACTTCATGCAGCGGTAGAGGCCAGAGTTTATCTGCTCCCCAcgctgc > 1:4759636‑M2/1‑62 (MQ=255) aCCACTCGTGCGGGATTGACTTCATGCAGCGGTAGAGGCCAGAGTTTATCTGCTCCCCACGCTGCAAg > 1:12697744/1‑68 (MQ=255) aCCACTCGTGCGGGATTGACTTCATGCAGCGGTAGAGGCCAGAGTTTATCTGCTCCCCACGCTGCAAg > 1:2402812/1‑68 (MQ=255) ccACTCGTGCGGGATTGACTTCATGCAGCGGTAGAGGCCAGAGTTTATCTGCTCCCCACGCTGCAAg < 1:15950346/67‑1 (MQ=255) tCGTGCGGGATTGACTTCATGCAGCGGTAGAGGCCAGAGTTTATCTGCTCCCCACGCTGCAAg < 1:8200115/63‑1 (MQ=255) cGTGCGGGATTGACTTCATGCAGCGGTAGAGGCCGGAGTTTATCTGCTCCCCACGCTGCAAGAAAAAg > 1:2836117/1‑68 (MQ=255) tGCGGGATTGACTTCATGCAGCGGTAGAGGCCAGAGTTTATCTGCTCCCCACGCTGCAAGAAAAAGga > 1:1251865/1‑68 (MQ=255) gCGGGATTGACTTCATGCAGCGGTAGAGGCCAGAGTTTATCTGCTCCCCACGCTGCAAGAAAAAGga < 1:22443653/67‑1 (MQ=255) gggATTGACTTCATGCAGCGGTAGAGGCCAGAGTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGaa > 1:19216107/1‑68 (MQ=255) gggATTGACTTCATGCAGCGGTAGAGGCCAGAGTTTATCTGCTCCCCACGCTCCAAGAAAAAGgaga < 1:21897614/67‑1 (MQ=255) ttGACTTCATGCAGCGGTAGAGGCCAGAGTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAgg < 1:6381470/67‑1 (MQ=255) cTTCATGCAGCGGTAGAGGCCAGAGTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGcgcg > 1:20143697/1‑68 (MQ=255) cTTCATGCAGCGGTAGAGGCCAGAGTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGcgcg > 1:6042280/1‑68 (MQ=255) cTTCATGCAGCGGTAGAGGCCAGAGTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGcgcg > 1:11187705/1‑68 (MQ=255) cTTCATGCAGCGGTAGAGGCCAGAGTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGcgcg > 1:3377926/1‑68 (MQ=255) cTTCATGCAGCGGTAGAGGCCAGAGTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGcgcg > 1:14478927/1‑68 (MQ=255) cTTCATGCAGCGGTAGAGGCCAGAGTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGcgcg > 1:9305129/1‑68 (MQ=255) tCATGCAGCGGTAGAGGCCAGAGTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGc < 1:3025028/68‑1 (MQ=255) cATGCAGCGGTAGAGGCCAGAGTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCt < 1:6777552/68‑1 (MQ=255) aTGCAGCGGTAGCGGCCAGAGTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTg < 1:27424603/68‑1 (MQ=255) aTGCAGCGGTAGAGGCCAGAGTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTg < 1:26211454/68‑1 (MQ=255) aTGCAGCGGTAGAGGCCAGAGTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTg < 1:11316560/68‑1 (MQ=255) aTGCAGCGGTAGAGGCCAGAGTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTg < 1:23758718/68‑1 (MQ=255) tGCAGCGGTAGAGGCCAGAGTTTATCTGCTCCCCCCGCTGCAAGAAAAACGAGAAAGGGCGCGGCTg > 1:22046966/1‑67 (MQ=255) tGCAGCGGTAGAGGCCAGAGTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGc < 1:26386652/68‑1 (MQ=255) tGCAGCGGTAGAGGCCAGAGTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGc < 1:589890/68‑1 (MQ=255) gCAGCGGTAGAGGCCAGAGTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGcc > 1:6138899/1‑68 (MQ=255) aGCGGTAGAGGCAAGAGTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCGGCCa > 1:11628726/1‑67 (MQ=255) gCGGTAGAGGCCAGAGTTTATCTGCTCCCCAcgctgcatgaagtcaatcccgcacgagtggtcgtggc < 1:28521398‑M2/68‑38 (MQ=255) gCGGTAGAGGCCAGAGTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAAc < 1:10042544/68‑1 (MQ=255) gCGGTAGAGGCCAGAGTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAAc > 1:25845449/1‑68 (MQ=255) gttAGAGGCCAGAGTTTATCTGCTCCCCACGCTGCAAGAAAAAGTAGAAAGGGCGCGGCTGCCAAc < 1:18495159/64‑1 (MQ=255) gggagagGCCAGAGTTTATCGGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAAc < 1:13732156/63‑1 (MQ=255) ggTAGAGGCCAGAGTTTATCTTCGCCCCACGATGCATGAAACAGGAGAAATGGCTCGGCTGCCAAc < 1:30953811/66‑1 (MQ=255) ggTAGAGGCCAGAGTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAAc < 1:23419109/66‑1 (MQ=255) ggTAGAGGCCAGAGTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAAc < 1:11521606/66‑1 (MQ=255) ggTAGAGGCCAGAGTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAAc < 1:20647719/66‑1 (MQ=255) ggTAGAGGCCAGAGTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAAc < 1:6544915/66‑1 (MQ=255) ggTAGAGGCCAGAGTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAAc < 1:9030304/66‑1 (MQ=255) tAGAGGCCAGAGTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGtt < 1:19512492/67‑1 (MQ=255) agagGCCAGAGTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTa > 1:24721455/1‑67 (MQ=255) agagGCCAGAGTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTAt < 1:6976224/68‑1 (MQ=255) agGCCAGAGTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATcc > 1:31839818/1‑68 (MQ=255) ccAGAGTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCcagc > 1:21213887/1‑68 (MQ=255) ccAGAGTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCcagc > 1:27190963/1‑68 (MQ=255) ccAGAGTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCcagc > 1:19782984/1‑68 (MQ=255) ccAGAGTTTATCTGCTCCCCACGATGCAAGAAAAAGGAGAAAAGCAGCGGCTGCCAACGTTAACcag > 1:29594948/1‑67 (MQ=37) cAGAGTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCcagca < 1:4129517/68‑1 (MQ=255) agTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGcc > 1:16736275/1‑68 (MQ=255) gTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCcagcag < 1:26850806/65‑1 (MQ=255) gTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGcc > 1:16951748/1‑67 (MQ=255) gTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGcc > 1:18090335/1‑67 (MQ=255) gTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGcc > 1:18283331/1‑67 (MQ=255) gTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGcc > 1:12443509/1‑67 (MQ=255) ttATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCcgc < 1:8918053/67‑1 (MQ=255) ttATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCcgc < 1:24363895/67‑1 (MQ=255) tCTGCTCCCCAcgctgcatgaagtcaatcccgcacgagtggtcgtggcgcaggatggtacgccgc < 1:30028788‑M2/65‑55 (MQ=255) tCTGCTCCCCAcgctgcatgaagtcaatcccgcacgagtggtcgtggcgcaggatggtacgccgc < 1:25018609‑M2/65‑55 (MQ=255) tCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGttt > 1:5471791/1‑68 (MQ=255) tCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGttt > 1:9684280/1‑68 (MQ=255) tCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGttt > 1:17265366/1‑68 (MQ=255) tCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGttt > 1:25556479/1‑68 (MQ=255) cTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTg < 1:2664329/68‑1 (MQ=255) tGCTCCCCAcgctgcatgaagtcaatcccgcacgagtggtcgtggcgcaggatggtacgccgctctg < 1:17922588‑M2/67‑59 (MQ=255) tGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTgg > 1:10284149/1‑68 (MQ=255) tGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTgg < 1:435045/68‑1 (MQ=255) tGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTgg > 1:22731602/1‑68 (MQ=255) tGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTgg > 1:23500810/1‑68 (MQ=255) gCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGt < 1:8708140/68‑1 (MQ=255) gCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGt < 1:31361088/68‑1 (MQ=255) tCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTa > 1:21504671/1‑68 (MQ=255) tCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTa > 1:20814418/1‑68 (MQ=255) tCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTa > 1:20120671/1‑68 (MQ=255) tCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTa > 1:5087718/1‑68 (MQ=255) tCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTa > 1:7909845/1‑68 (MQ=255) tCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTa > 1:16274440/1‑68 (MQ=255) tCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTa < 1:13182293/68‑1 (MQ=255) ccACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACa > 1:12223236/1‑68 (MQ=255) aCGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACaa > 1:14738777/1‑67 (MQ=255) aCGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACaa > 1:14302318/1‑67 (MQ=255) aCGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAg < 1:15123199/68‑1 (MQ=255) aCGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTAGCCAGCAGCCGCGGTAGGTAAACaa > 1:7525408/1‑67 (MQ=255) | GCGCCACGACCACTCGTGCGGGATTGACTTCATGCAGCGGTAGAGGCCAGAGTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAG > CP009273/2640543‑2640676 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |