New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 3622650 =540 (1.400)22 (0.070) 8/96 NT 5.4% coding (249/2736 nt) rbbA ribosome‑associated ATPase: ATP‑binding protein/ATP‑binding membrane protein
?CP009273 3622682 = 304 (0.920)coding (217/2736 nt) rbbA ribosome‑associated ATPase: ATP‑binding protein/ATP‑binding membrane protein

Only 100 of 616 total aligned reads displayed.

CGACAAGGTGTGGTAGAGGTTTTTGCCCAGCCCCTGCGGCATCCAGGCGATGCGCGGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGCACCATCACATTGCCCTGTTCAATGACGCGGG  >  CP009273/3622584‑3622717
                                                                  |                                                                   
 gACAAGGTGTGGTAGAGGTTTTTGCCCAGCCCCTGCGGCATCCAGGCGATGCGCGGGCAGACGTcgcg                                                                   <  1:28555002/68‑1 (MQ=255)
   cAAGGTGTGGTAGAGGTTTTTGCCCAGCCCCTGCGGCATCCAGGCGATGCGCGGGCAGACGTCgcggc                                                                 <  1:30813507/68‑1 (MQ=255)
    aaGGTGTGGTAGAGGTTTTTGCCCAGCCCCTGCGGCATCCAGGCGATGCGCGGGCAGACGTCgcggcg                                                                >  1:15631752/1‑68 (MQ=255)
    aaGGTGTGGTAGAGGTTTTTGCCCAGCCCCTGCGGCATCCAGGCGATGCGCGGGCAGACGTCgcggcg                                                                >  1:11551340/1‑68 (MQ=255)
      ggTGTGGTAGAGGTTTTTGCCCAGCCCCTGCGGCATCCAGGCGATGCGCGGGCAGACGTCGCGGCGAt                                                              >  1:14292998/1‑68 (MQ=255)
      gcttgttgtcgttgatttccggtgcccgcgtcattgaacagggcaatgtgatggtgctggGCGGCGa                                                               >  1:23566599‑M1/61‑67 (MQ=255)
        tgtgGTAGAGGTTTTTGCCCAGCCCCTGCGGCATCCAGGCGATGCGCGGGCAGACGTCGCGGCGAt                                                              >  1:3730040/1‑66 (MQ=255)
         gtgGTAGAGGTTTTTGCCCAGCCCCTGCGGCATCCAGGCGATGCGCGGGCAGACGTCGCGGCGATGc                                                            <  1:30941054/67‑1 (MQ=255)
         gtgGTAGAGGTTTTTGCCCAGCCCCTGCGGCATCCAGGCGATGCGCGGGCAGACGTCGCGGCGATGc                                                            <  1:20105550/67‑1 (MQ=255)
         gtgGTAGAGGTTTTTGCCCAGCCCCTGCGGCATCCAGGCGATGCGCGGGCAGACGTCGCGGCGATGc                                                            <  1:24065161/67‑1 (MQ=255)
         gtgGTAGAGGTTTTTGCCCAGCCCCTGCGGCATCCAGGCGATGCGCGGGCAGACGTCGCGGCGATGc                                                            <  1:25336505/67‑1 (MQ=255)
         gtgGTAGAGGGTTTTGCCCAGCCCCTGCGGCATCCAGGCGATGCGCGGGCAGACGTCGCGGCGATGc                                                            <  1:28882997/67‑1 (MQ=255)
         gtgGAAGAGGTTTTTGCCCAGCCCCTGCGGCATCCAGGCGATGCGCGGGCAGACGTCGCGGCGATGc                                                            <  1:4344788/67‑1 (MQ=255)
            gTAGAGGTTTTTGCCCAGCCCCTGCGGCATCCAGGCGATGCGCGGGCAGACGTCGCGGCGATGCTTCg                                                        >  1:17569419/1‑68 (MQ=255)
            gTAGAGGTTTTTGCCCAGCCCCTGCGGCATCCAGGCGATGCGCGGGCAGACGTCGCGGCGATGCTTCg                                                        >  1:31878412/1‑68 (MQ=255)
             tAGAGGTTTTTGCCCAGCCCCTGCGGCATCCAGGCGATGCGCGGGCAGACGTCGCGGCGATGCTTCgg                                                       >  1:12688819/1‑68 (MQ=255)
              agagGTTTTTGCCCAGCCCCTGCGGCATCCAGGCGATGCGCGGGCAGACGTCGCGGCGATGCTTCggg                                                      >  1:7654006/1‑68 (MQ=255)
              agagGTTTTTGCCCAGCCCCTGCGGCATCCAGGCGATGCGCGGGCAGACGTCGCGGCGATGCTTCggg                                                      >  1:24537240/1‑68 (MQ=255)
              agagGTTTTTGCCCAGCCCCTGCGGCATCCAGGCGATGCGCGGGCAGACGTCGCGGCGATGCTTCggg                                                      >  1:25006793/1‑68 (MQ=255)
              agagGTTTTTGCCCAGCCCCTGCGGCATCCAGGCGATGCGCGGGCAGACGTCGCGGCGATGCTTCggg                                                      >  1:26409563/1‑68 (MQ=255)
              agagGTTTTTGCCCAGCCCCTGCGGCATCCAGGCGATGCGCGGGCAGACGTCGCGGCGATGCTTCggg                                                      >  1:5504724/1‑68 (MQ=255)
              agagGTTTTTGCCCAGCCCCTGCGGCATCCAGGCGATGCGCGGGCAGACGTCGCGGCGATGCTTCggg                                                      >  1:27202971/1‑68 (MQ=255)
              agagGTTTTTGCCCAGCCCCTGCGGCATCCAGGCGATGCGCGGGCAGACGTCGCGGCGATGCTTCggg                                                      >  1:1483269/1‑68 (MQ=255)
              agagGTTTTTGCCCAGCCCCTGCGGCATCCAGGCGATGCGCGGGCAGACGTCGCGGCGATGCTTCgg                                                       <  1:13248797/67‑1 (MQ=255)
              agagGTTTTTGCCCAGACCCTGCGGCATCCAGGCGATGCGCGGGCAGCCGTCGCGGCGATGCTTCggg                                                      >  1:11687037/1‑68 (MQ=255)
                agGTTTTTGCCCAGCCCCTGCGGCATCCAGGCGATGCGCGGGCAGACGTCGCGGCGATGCTTCGGGTc                                                    >  1:5019233/1‑68 (MQ=255)
                agGTTTTTGCCCAGCCCCTGCGGCATCCAGGCGATGCGCGGGCAGACGTCGCGGCGATGCTTCGGGTc                                                    >  1:6073311/1‑68 (MQ=255)
                  gTTTTTGCCCAGCCCCTGCGGCATCCAGGCGATGCGCGGGCAGACGTCGCGGCGATGCTTCGGGTcgc                                                  >  1:22159126/1‑68 (MQ=255)
                  gTTTTTGCCCAGCCCCTGCGGCATCCAGGCGATGCGCGGGCAGACGTCGCGGCGATGCTTCGGGTcgc                                                  >  1:6852012/1‑68 (MQ=255)
                   tttttGCCCAGCCCCTGCGGCATCCAGGCGATGCGCGGGCAGACGTCGCGGCGATGCTTCGGGTcgc                                                  <  1:9060112/67‑1 (MQ=255)
                   tttttGCCCAGCCCCTGCGGCATCCAGGCGATGCGCGGGCAGACGTCGCGGCGATGCTTCGGGTcgc                                                  <  1:5667058/67‑1 (MQ=255)
                   tttttGCCCAGCCCCTGCGGCATCCAGGCGATGCGCGGGCAGACGTCGCGGCGATGCTTCGGGTcgc                                                  <  1:22540472/67‑1 (MQ=255)
                   tttttGCCCAGCCCCTGCGGCATCCAGGCGATGCGCGGGCAGACGTCGCGGCGATGCTTCGGGTcgc                                                  >  1:12337213/1‑67 (MQ=255)
                    ttttGCCCAGCCCCTGCGGCATCCAGGCGATGCGCGGGCAGACGTCGCGGCGATGCTTCGGGTCgcgc                                                <  1:16278394/68‑1 (MQ=255)
                    ttttGCCCAGCCCCTGCGGCATCCAGGCGATGCGCGGGCAGACGTCGCGGCGATGCTTCGGGTCgcgc                                                <  1:27593705/68‑1 (MQ=255)
                     tttGCCCAGCCCCTGCGGCATCCAGGCGATGCGCGGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCa                                               <  1:30191102/68‑1 (MQ=255)
                      ttGCCCAGCCCCTGCGGCATCCAGGCGATGCGCGGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCat                                              <  1:3984144/68‑1 (MQ=255)
                        gCCCAGCCCCTGCGGCATCCAGGCGATGCGCGGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCata                                             >  1:8175395/1‑67 (MQ=255)
                          ccAGCCCCTGCGGCATCCAGGCGATGCGCGGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATc                                           <  1:25979635/67‑1 (MQ=255)
                          ccAGCCCCTGCGGCATCCAGGCGATGCGCGGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATc                                           <  1:18667510/67‑1 (MQ=255)
                           cAGCCCCTGCGGCATCCAGGCGATGCGCGGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATcgc                                         <  1:29070829/68‑1 (MQ=255)
                               cccTGCGGCATCCAGGCGATGCGCGGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATcgccgc                                      <  1:20793182/67‑1 (MQ=255)
                               cccTGCGGCATCCAGGCGATGCGCGGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATcgccgc                                      <  1:27426340/67‑1 (MQ=255)
                               cccTGCGGCATCCAGGCGATGCGCGGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATcgccgc                                      <  1:26714684/67‑1 (MQ=255)
                               cccTGCGGCATCCAGGCGATGCGCGGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATcgccgc                                      >  1:17432927/1‑67 (MQ=255)
                               cccTGCGGCATCCAGGCGATGCGCGGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATcgccgc                                      <  1:17847222/67‑1 (MQ=255)
                               cccTGCGGCATCCAGGCGATGCGCGGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATcgccgc                                      <  1:18152922/67‑1 (MQ=255)
                               cccTGCGGCATCCAGGCGATGCGCGGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATcgccgc                                      <  1:6640293/67‑1 (MQ=255)
                               cccTGCGGCATCCAGGCGATGCGCGGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCgccgcc                                     <  1:24767329/68‑1 (MQ=255)
                                 cTGCGGCATCCCGGCGATGCGCGGGCAGCCGTCGCGGCGATGCTTCGGGTCGCGCATAGcgccgcgac                                   <  1:2569299/68‑4 (MQ=255)
                                 cTGCGGCATCCAGGCGATGCGCGGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCa                                   <  1:28419339/68‑1 (MQ=255)
                                 cTGCGGCATCCAGGCGATGCGCGGGCAGACGGCGCGGCGATGCTTCGGGTCGCGCATATcgccgcgac                                   <  1:29550036/68‑4 (MQ=255)
                                   gCGGCATCCAGGCGATGCGCGGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGc                                 <  1:8758469/68‑1 (MQ=255)
                                   gCGGCATCCAGGCGATGCGCGGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGc                                 <  1:32088986/68‑1 (MQ=255)
                                   gCGGCATCCAGGCGATGCGCGGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGc                                 <  1:29834005/68‑1 (MQ=255)
                                   gCGGCATCCAGGCGATGCGCGGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGc                                 <  1:20448217/68‑1 (MQ=255)
                                    cGGCATCCAGGCGATGCGCGGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGc                                 >  1:9673710/1‑67 (MQ=255)
                                    cGGCATCCAGGCGATGCGCGGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGc                                 >  1:15228284/1‑67 (MQ=255)
                                     ggCATCCAGGCGATGCGCGGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGcc                                >  1:11004007/1‑66 (MQ=255)
                                     ggCATCCAGGCGATGCGCGGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGCa                                >  1:9387642/1‑67 (MQ=255)
                                     ggCATCCAGGCGATGCGCGGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGCa                                <  1:16822515/67‑1 (MQ=255)
                                     ggCATCCAGGCGATGCGCGGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGCa                                >  1:17983388/1‑67 (MQ=255)
                                     ggCATCCAGGCGATGCGCGGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGCa                                <  1:8040540/67‑1 (MQ=255)
                                     ggCATCCAGGCGATGCGCGGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGCa                                <  1:14019843/67‑1 (MQ=255)
                                     ggCATCCAGGCGATGCGCGGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGCa                                >  1:13539710/1‑67 (MQ=255)
                                      gCATCCAGGCGATGCGCGGGCAGCCGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGCAcc                              >  1:15948290/1‑68 (MQ=255)
                                       cATCCAGGCGATGCGCGGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGCAcc                              <  1:31531142/67‑1 (MQ=255)
                                       cATCCAGGCGATGCGCGGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGCAcc                              <  1:30394802/67‑1 (MQ=255)
                                        aTCCAGGCGATGCGCGGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGCACCAt                            <  1:15406141/68‑1 (MQ=255)
                                           cAGGCGATGCGCGGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGCACCATcac                         <  1:28206508/68‑1 (MQ=255)
                                           acagggcaatgtgatggtgctggGCGGCGCTGCTTCGGGTCGCGCATATCGCCGCCCAGCACCATcac                         <  1:19269941‑M1/45‑1 (MQ=255)
                                           acagggcaatgtgatggtgctggGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCCGCCCCCTcac                         <  1:28109066‑M1/45‑1 (MQ=255)
                                           acagggcaatgtgatggtgctggGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCCGCACCATcac                         <  1:27895731‑M1/45‑1 (MQ=255)
                                             ggCGATGCGCGGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGCACCATCACAt                       >  1:13041746/1‑68 (MQ=255)
                                               cGATGCGCGGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGCACCATCACAtt                      >  1:725271/1‑67 (MQ=255)
                                               cGATGCGCGGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGCACCATCACAtt                      >  1:853271/1‑67 (MQ=255)
                                               cGATGCGCGGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGCACCATCACAtt                      >  1:16499815/1‑67 (MQ=255)
                                               cGATGCGCGGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGCACCATCACAtt                      >  1:25828172/1‑67 (MQ=255)
                                               cGATGCGCGGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGCACCATCACAtt                      >  1:19519265/1‑67 (MQ=255)
                                                gATGCGCGGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGCACCATCACATTGc                    <  1:9808852/68‑1 (MQ=255)
                                                gATGCGCGGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGCACCATCACATTGc                    <  1:10403291/68‑1 (MQ=255)
                                                gATGCGCGGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGCACCATCACATTGc                    <  1:23728884/68‑1 (MQ=255)
                                                gATGCGCGGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGCACCATCACATTGc                    <  1:23066722/68‑1 (MQ=255)
                                                gATGCGCGGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGCACCATCACATTGc                    <  1:31304939/68‑1 (MQ=255)
                                                   gcgcGGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGCACCATCACATTGCCCt                 <  1:519791/68‑1 (MQ=255)
                                                     gtgatggtgctggGCGGCGATGCTTCGGGTCGCGCATTTCGCCGCCCAGCCCCATCACATTGCCCtgg               <  1:10031310‑M1/55‑2 (MQ=255)
                                                     gcgGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCCGCACCATCACATTGCCCTGt               <  1:23237848/68‑1 (MQ=255)
                                                     gcgGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGCACCATCACATTGCCCTGt               <  1:21448708/68‑1 (MQ=255)
                                                     gcgGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGCACCATCACATTGCCCTGt               >  1:1448689/1‑68 (MQ=255)
                                                     gcgGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGCACCATCACATTGCCCTGt               <  1:16119773/68‑1 (MQ=255)
                                                     gcgGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGCACCATCACATTGCCCTGt               <  1:17134152/68‑1 (MQ=255)
                                                     gcgGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGCACCATCACATTGCCCTGt               <  1:21066256/68‑1 (MQ=255)
                                                     gcgGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGCACCATCACATTGCCCTGt               <  1:21857271/68‑1 (MQ=255)
                                                     gcgGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGCACCATCACATTGCCCTGt               <  1:6396735/68‑1 (MQ=255)
                                                     gcgGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGCACCATCACATTGCCCTGt               <  1:26794112/68‑1 (MQ=255)
                                                     gcgGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGCACCATCACATTGCCCTGt               <  1:2933608/68‑1 (MQ=255)
                                                     gcgGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGCACCATCACATTGCCCTGt               <  1:4567914/68‑1 (MQ=255)
                                                       gggCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGCACCATCACATTGCCCTGtt              <  1:18397208/67‑1 (MQ=255)
                                                                  GCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGCACCATCACATTGCCCTGTTCAATGACGCggg  >  1:10651873‑M1/1‑68 (MQ=255)
                                                                  GCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGCACCATCACATTGCCCTGTTCAATGACGCgg   <  1:13728259‑M1/67‑1 (MQ=255)
                                                                  |                                                                   
CGACAAGGTGTGGTAGAGGTTTTTGCCCAGCCCCTGCGGCATCCAGGCGATGCGCGGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGCACCATCACATTGCCCTGTTCAATGACGCGGG  >  CP009273/3622584‑3622717

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.