| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 3757369 = | 0 (0.000) | 5 (0.020) | 4/96 | NT | 100% | coding (1827/4134 nt) | rhsA | Rhs family protein, putative polymorphic toxin; putative polysaccharide synthesis/export protein; putative neighboring cell growth inhibitor |
| ? | CP009273 | 3757464 = | NA (NA) | coding (1922/4134 nt) | rhsA | Rhs family protein, putative polymorphic toxin; putative polysaccharide synthesis/export protein; putative neighboring cell growth inhibitor | |||||
GCAGGGCCATGAAACGCGGTATGAATACAACATCGCCGGTGACCTGACCGCCGTCATTGCCCCGGACGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAGGCCGTCCGTACCACGCAGGGCGGGCTA > CP009273/3757303‑3757435 | ggtcaagtacatcgtaacggaaggtggtgtggctgccgttttcactggtcaggcggatgacccgtcCg > 1:5630944‑M1/67‑68 (MQ=255)ggtcaagtacatcgtaacggaaggtggtgtggctgccgttttcactggtcaggcggatgacccgtcCg > 1:21567491‑M1/67‑68 (MQ=255)ggtcaagtacatcgtaacggaaggtggtgtggctgccgttttcactggtcaggcggatgacccgtcCg > 1:21466193‑M1/67‑68 (MQ=255)ggtcaagtacatcgtaacggaaggtggtgtggctgccgttttcactggtcaggcggatgacccgtcCg > 1:21586414‑M1/67‑68 (MQ=255)ggtcaagtacatcgtaacggaaggtggtgtggctgccgttttcactggtcaggcggatgacccgtcCg > 1:6257986‑M1/67‑68 (MQ=255)ggtcaagtacatcgtaacggaaggtggtgtggctgccgttttcactggtcaggcggatgacccgtcCg > 1:18694052‑M1/67‑68 (MQ=255)ggtcaagtacatcgtaacggaaggtggtgtggctgccgttttcactggtcaggcggatgacccgtcCg > 1:18482401‑M1/67‑68 (MQ=255)ggtcaagtacatcgtaacggaaggtggtgtggctgccgttttcactggtcaggcggatgacccgtcCg > 1:8793313‑M1/67‑68 (MQ=255)ggtcaagtacatcgtaacggaaggtggtgtggctgccgttttcactggtcaggcggatgacccgtcCg > 1:9544289‑M1/67‑68 (MQ=255)ggtcaagtacatcgtaacggaaggtggtgtggctgccgttttcactggtcaggcggatgacccgtcCg > 1:27949480‑M1/67‑68 (MQ=255)ggtcaagtacatcgtaacggaaggtggtgtggctgccgttttcactggtcaggcggatgacccgtcCg > 1:28503303‑M1/67‑68 (MQ=255)ggtcaagtacatcgtaacggaaggtggtgtggctgccgttttcactggtcaggcggatgacccgtcCg > 1:4776373‑M1/67‑68 (MQ=255)ggtcaagtacatcgtaacggaaggtggtgtggctgccgttctcactggtcaggcggatgacccgtcCg > 1:10828432‑M1/67‑68 (MQ=255)ggtcaagtacatcgtaacggaagggggtgtggctgccgttttcactggtcaggcggatgacccgtcCg > 1:5515894‑M1/67‑68 (MQ=255)ggtcaagtacatcgtaacggaagggggtgtggctgccgttttcactggtcaggcggatgacccgtcCg > 1:26167670‑M1/67‑68 (MQ=255)gggcaagtacatcgtaacggaaggtggtgtggctgccgttttcactggtcaggcggatgacccgtcCg > 1:6110704‑M1/67‑68 (MQ=255)gggcaagtacatcgtaacggaaggtggtgtggctgccgttttcactggtcaggcggatgacccgtcCg > 1:10954655‑M1/67‑68 (MQ=255) gtcaagtacatcgtaacggaaggtggtgtggctgccgttttcactggtcaggcggatgacccgtcCg < 1:13852225‑M1/2‑1 (MQ=255) tcaagtacatcgtaacggaaggtggtgtggctgccgttttcactggtcaggcggatgacccgtcCGgc < 1:7335329‑M1/4‑1 (MQ=255) gaagtacatcgtaacggaaggtggtgtggctgccgttttcactggtcaggcggatgacccgtcCGgca > 1:19711846‑M1/64‑68 (MQ=255) caagtacatcgtaacggaaggtggtgtggctgccgttttcactggtcaggcggatgacccgtcCGgca > 1:10683346‑M1/64‑68 (MQ=255) caagtacatcgtaacggaaggtggtgtggctgccgttttcactggtcaggcggatgacccgtcCGgca > 1:22196946‑M1/64‑68 (MQ=255) caagtacatcgtaacggaaggtggtgtggctgccgttttcactggtcaggcggatgacccgtcCGgca > 1:10542592‑M1/64‑68 (MQ=255) caagtacatcgtaacggaaggtggtgtggctgccgttttcactggtcaggcggatgacccgtcCGgc > 1:5543925‑M1/64‑67 (MQ=255) caagtacatcgtaacggaaggtggtgtggctgccgttttcactggtcaggcggatgacccctcCGgca < 1:14245770‑M1/5‑1 (MQ=255) caagtacaacgtaacggaaggtggggtggctgccgttttcactgggcaggcggatgacccgtcCGgc > 1:22971160‑M1/64‑67 (MQ=255) cgtacatcgtaacggaaggtggtgtggctgccgttttcactggtcaggcggatgacccgtcCGgcagc > 1:13962823‑M1/62‑68 (MQ=255) agtacctcgtaacggaaggtggtggggctgccgttttcactggtcaggcggatgacccgtcCGgcagc > 1:23950675‑M1/62‑68 (MQ=255) agtacatcgtaacggaaggtggtgtggctgccgttttcactggtcaggcggatgacccgtcCGgcagc > 1:29391709‑M1/62‑68 (MQ=255) agtacatcgtaacggaaggtggtgtggctgccgttttcactggtcaggcggatgacccgtcCGgcagc > 1:21359777‑M1/62‑68 (MQ=255) agtacatcgtaacggaaggtggtgtggctgccgttttcactggtcaggcggatgacccgtcCGgcagc > 1:4910511‑M1/62‑68 (MQ=255) agtacatcgtaacggaaggtggtgtggctgccgttttcactggtcaggcggatgacccgtcCGgcagc > 1:12284990‑M1/62‑68 (MQ=255) agtacatcgtaacggaaggtggtgtggctgccgttttcactggtcaggcggatgacccgtcCGgcagc > 1:5430435‑M1/62‑68 (MQ=255) agtacatcgtaacggaaggtggtgtggctgccgttttcactggtcaggcggatgacccgtcCGgcagc > 1:15240297‑M1/62‑68 (MQ=255) agtacatcgtaacggaaggtggtgtggctgccgttttcactggtcaggcggatgacccgtcCGgcagc > 1:23596827‑M1/62‑68 (MQ=255) agtacatcgtaacggaaggtggtgtggctgccgttttcactggtcaggcggatgacccgtcCGgcagc > 1:23561045‑M1/62‑68 (MQ=255) agtacatcgtaacggaaggtggtgtggctgccgttttcactggtcaggcggatgacccgtcCGgcagc > 1:23538724‑M1/62‑68 (MQ=255) agtacatcgtaacggaaggtggtgtggctgccgttttcactggtcaggcggatgacccgtcCGgcagc > 1:7960581‑M1/62‑68 (MQ=255) agtacatcgtaacggaaggtggtgtggctgccgttttcactggtcaggcggatgacccgtcCGgcagc > 1:18806426‑M1/62‑68 (MQ=255) agtacatcgtaacggaaggtggtgtggctgccgttttcactggtcaggcggatgacccgtcCGgcagc > 1:6398751‑M1/62‑68 (MQ=255) agtacatcgtaacggaaggtggtgtggctgccgttttcactggtcaggcggatgacccgtcCGgcagc > 1:29701181‑M1/62‑68 (MQ=255) agtacatcgtaacggaaggtggtgtggctgccgttttcactggtcaggcggatgacccgtcCGgcagc > 1:4341898‑M1/62‑68 (MQ=255) agtacatcgtaacggaaggtggtgtggctgccgttttcactgggcaggcggatgacccgtcCGgcagc > 1:21771084‑M1/62‑68 (MQ=255) agtacatcgtaacggaaggtggtgtggctgccgttttcaccggtcaggcggatgacccgtcCGgcagc > 1:21662047‑M1/62‑68 (MQ=255) agtacagcgtaacggaaggtggtgtggctgccgttttcactggtcaggcggatgacccgtcCGgcagc > 1:30699440‑M1/62‑68 (MQ=255) gtacatcgtaacggaaggtggtgtggctgccgttttcactggtcaggcggatgacccgtcCGgcagca < 1:3838792‑M1/8‑1 (MQ=255) gtacatcgtaacggaaggtggtgtggctgccgttttcactggtcaggcggatgacccgtcCGgcagc > 1:9775766‑M1/61‑67 (MQ=255) gtacatcgtaacggaaggtggtgtggctgccgttttcactggtcaggcggatgacccgtcCGgcagc > 1:3952137‑M1/61‑67 (MQ=255) gtacatcgtaacggaaggtggtgtggctgccgttttcactggtcaggcggatgacccgtcCGgcagc > 1:29173342‑M1/61‑67 (MQ=255) gtacatcgtaacggaaggtggtgtggctgccgttttcactggtcaggcggatgacccgtcCGgcagc > 1:14026144‑M1/61‑67 (MQ=255) gtacatcgtaacggaaggtggtgtggctgccgttttcactggtcaggcggatgacccgtcCGgcagc > 1:21919981‑M1/61‑67 (MQ=255) tacatcgtaacggaaggtggtgtggctgccgttttcactggtcaggcggatgacccgtcCGgcagca < 1:9332230‑M1/8‑1 (MQ=255) tacatcgtaacggaaggtggtgtggctgccgttttcactggtcaggcggatgacccgtcCGgcagca < 1:3894335‑M1/8‑1 (MQ=255) tacatcgtaacggaaggtggtgtggctgccgttttcactggtcaggcggatgacccgtcCGgcagca < 1:1959905‑M1/8‑1 (MQ=255) tacatcgtaacggaaggtggtgtggctgccgttttcactggtcaggcggatgacccgtcCGgcagca < 1:19590247‑M1/8‑1 (MQ=255) tacatcgtaacggaaggtggtgtggctgccgttttcactggtcaggcggatgacccgtcCGgcagca < 1:8043440‑M1/8‑1 (MQ=255) acatcgtaacggaaggtggtgtggctgccgttttcactggtcaggcggatgacccgtccggcagcaac < 1:17693807‑M1/10‑3 (MQ=255) acatcgtaacggaaggtggtgtggctgccgttttcactggtcaggcggatgacccgtcCGgcagca > 1:12922038‑M1/59‑66 (MQ=255) acatcgtaacggaaggtggggtggcggccgttttcactggtcaggcggatgacccgtcCGGcagcag > 1:26247426‑M1/59‑67 (MQ=255) tcgtaacggaaggtggtgtggctgccgttttcactggtcaggcggatgacccgtcCGGCAGCAGAAAc > 1:3127685‑M1/56‑68 (MQ=255) aacggaaggtggtgtggctgccgttttcactggtcaggcggatgacccgtcCGGCAGCAGAAACggg > 1:2935638‑M1/52‑67 (MQ=255) ggtgtggctgccgttttcactggtcaggcggatgacccgtcCGgca < 1:28035882‑M1/5‑1 (MQ=255) ggctgccgttttcactggtcaggcggatgacccgtcCGGCAGCAGAAACGGGACACAGTACGATGCg > 1:22055861‑M1/37‑67 (MQ=255) tcaggcggatgacccgtcCGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAGGccgtccgt > 1:24013112‑M1/19‑67 (MQ=255) tcaggcggatgacccgtcCGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAGGccgtccgt > 1:13234649‑M1/19‑67 (MQ=255) tgacccgtcCGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAGGCCGTCCGTACCACGCAgg > 1:3615375‑M1/10‑68 (MQ=255) cCGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAGGCCGTCCGTACCACGCAGGGCGGGCTa < 1:24333364‑M1/67‑1 (MQ=255) | GCAGGGCCATGAAACGCGGTATGAATACAACATCGCCGGTGACCTGACCGCCGTCATTGCCCCGGACGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAGGCCGTCCGTACCACGCAGGGCGGGCTA > CP009273/3757303‑3757435 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |