| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 3757369 = | 0 (0.000) | 5 (0.020) | 4/96 | NT | 100% | coding (1827/4134 nt) | rhsA | Rhs family protein, putative polymorphic toxin; putative polysaccharide synthesis/export protein; putative neighboring cell growth inhibitor |
| ? | CP009273 | 3757464 = | NA (NA) | coding (1922/4134 nt) | rhsA | Rhs family protein, putative polymorphic toxin; putative polysaccharide synthesis/export protein; putative neighboring cell growth inhibitor | |||||
Only 100 of 345 total aligned reads displayed.
GCGTGGGGAAAGGCCGTCCGTACCACGCAGGGCGGGCTAACGCGCAGTATGGAATACGATGCTGCCGGACGGGTCATCCGCCTGACCAGTGAAAACGGCAGCCACA > CP009273/3757397‑3757502 | gCGTGGGGAACGGCCGTCCGTGCCACGCAGGGCGGGCTAACGCGCAGTATGGAATACGATGCTGCCgg < 1:13586383/68‑1 (MQ=255)gCGTGGGGAAAGGCCGTCCGTACCACGCAGGGCGGGCTAACGCGCAGTATGGAATACGATGCTGCCgg > 1:31705279/1‑68 (MQ=35)gCGTGGGGAAAGGCCGTCCGTACCACGCAGGGCGGGCTAACGCGCAGTATGGAATACGATGCTGCCgg > 1:20680204/1‑68 (MQ=35)gCGTGGGGAAAGGCCGTCCGTACCACGCAGGGCGGGCTAACGCGCAGTATGGAATACGATGCTGCCgg > 1:21028462/1‑68 (MQ=35)gCGTGGGGAAAGGCCGTCCGTACCACGCAGGGCGGGCTAACGCGCAGTATGGAATACGATGCTGCCgg > 1:21464184/1‑68 (MQ=35)gCGTGGGGAAAGGCCGTCCGTACCACGCAGGGCGGGCTAACGCGCAGTATGGAATACGATGCTGCCgg > 1:2411456/1‑68 (MQ=35)gCGTGGGGAAAGGCCGTCCGTACCACGCAGGGCGGGCTAACGCGCAGTATGGAATACGATGCTGCCgg > 1:25183738/1‑68 (MQ=35)gCGTGGGGAAAGGCCGTCCGTACCACGCAGGGCGGGCTAACGCGCAGTATGGAATACGATGCTGCCgg > 1:20495938/1‑68 (MQ=35)gCGTGGGGAAAGGCCGTCCGTACCACGCAGGGCGGGCTAACGCGCAGTATGGAATACGATGCTGCCgg > 1:2842328/1‑68 (MQ=35)gCGTGGGGAAAGGCCGTCCGTACCACGCAGGGCGGGCTAACGCGCAGTATGGAATACGATGCTGCCgg > 1:30148219/1‑68 (MQ=35)gCGTGGGGAAAGGCCGTCCGTACCACGCAGGGCGGGCTAACGCGCAGTATGGAATACGATGCTGCCgg > 1:3241862/1‑68 (MQ=35)gCGTGGGGAAAGGCCGTCCGTACCACGCAGGGCGGGCTAACGCGCAGTATGGAATACGATGCTGCCgg > 1:20070722/1‑68 (MQ=35)gCGTGGGGAAAGGCCGTCCGTACCACGCAGGGCGGGCTAACGCGCAGTATGGAATACGATGCTGCCgg > 1:17610609/1‑68 (MQ=35)gCGTGGGGAAAGGCCGTCCGTACCACGCAGGGCGGGCTAACGCGCAGTATGGAATACGATGCTGCCgg > 1:18589837/1‑68 (MQ=35)gCGTGGGGAAAGGCCGTCCGTACCACGCAGGGCGGGCTAACGCGCAGTATGGAATACGATGCTGCCgg < 1:6131747/68‑1 (MQ=35)gCGTGGGGAAAGGCCGTCCGTACCACGCAGGGCGGGCTAACGCGCAGTATGGAATACGATGCTGCCgg > 1:6667178/1‑68 (MQ=35)gCGTGGGGAAAGGCCGTCCGTACCACGCAGGGCGGGCTAACGCGCAGTATGGAATACGATGCTGCCgg > 1:106425/1‑68 (MQ=35)gCGTGGGGAAAGGCCGTCCGTACCACGCAGGGCGGGCTAACGCGCAGTATGGAATACGATGCTGCCgg > 1:9386874/1‑68 (MQ=35)gCGTGGGGAAAGGCCGTCCGTACCACGCAGGGCGGGCTAACGCGCAGTATGGAATACGATGCTGCCgg > 1:18384564/1‑68 (MQ=35) gTGGGGAAAGGCCGTCCGTACCACGCAGGGCGGGCTAACGCGCAGTATGGAATACGATGCTGCCGGAc > 1:4250182/1‑68 (MQ=35) ggggAACGGCCGTCCGGACCAGGCAGGGCGGGCTAACGCGCAGTATCGAATACGATGCTGCCGGACgg < 1:21717622/68‑1 (MQ=11) ggggAAAGGCCGTCCGTACCACGCAGGGCGGGCTAACGCGCAGTATGGAATACGATGCTGCCGGACgg < 1:16126554/68‑1 (MQ=35) ggggAAAGGCCGTCCGTACCACGCAGGGCGGGCTAACGCGCAGTATGGAATACGATGCTGCCGGACgg > 1:6593765/1‑68 (MQ=35) ggggAAAGGCCGTCCGTACCACGCAGGGCGGGCTAACGCGCAGTATGGAATACGATGCTGCCGGACgg < 1:22159644/68‑1 (MQ=35) gggAAAGGCCGTCCGTACCACGCAGGGCGGGCTAACGCGCAGTATGGAATACGATGCTGCCGGACggg > 1:25300701/1‑68 (MQ=35) gggAAAGGCCGTCCGTACCACGCAGGGCGGGCTAACGCGCAGTATGGAATACGATGCTGCCGGACggg > 1:5960830/1‑68 (MQ=35) ggAAAGGCCGTCCGTACCACGCAGGGCGGGCTAACGCGCAGTATGGAATACGATGCTGCCGGACggg < 1:2627740/67‑1 (MQ=35) ggAAAGGCCGTCCGTACCACGCAGGGCGGGCTAACGCGCAGTATGGAATACGATGCTGCCGGACggg < 1:4777551/67‑1 (MQ=35) gAAAGGCCGTCCGTACCACGCAGGGCGGGCTAACGCGCAGTATGGAATACGATGCTGCCGGACGGGt < 1:16555297/67‑1 (MQ=35) gAAAGGCCGTCCGTACCACGCAGGGCGGGCTAACGCGCAGTATGGAATACGATGCTGCCGGACGGGTc > 1:12607146/1‑68 (MQ=35) gAAAGGCCGTCCGTACCACGCAGGGCGGGCTAACGCGCAGTATGGAATACGATGCTGCCGGACGGGTc > 1:17008950/1‑68 (MQ=35) gAAAGGCCGTCCGTACCACGCAGGGCGGGCTAACGCGCAGTATGGAATACGATGCTGCCGGACGGGTc > 1:17350222/1‑68 (MQ=35) aaaGGCCGTCCGTACCACGCAGGGCGGGCTAACGCGCAGTATGGAATACGATGCTGCCGGACGGGTCa > 1:9731592/1‑68 (MQ=35) aGGCCGTCCGTACCACGCAGGGCGGGCTAACGCGCAGTATGGAATACGATGCTGCCGGACGGGTCAt > 1:22395986/1‑67 (MQ=35) gCCGTCCGTACCACGCAGGGCGGGCTATCGCGCAGTATGGAATACGATGCTGCCGGACGGGTCATcc > 1:18290474/1‑67 (MQ=25) gCCGTCCGTACCACGCAGGGCGGGCTAACGCGCAGTATGGAATACGATGCTGCCGGACGGGTCATcc > 1:8937866/1‑67 (MQ=35) gCCGTCCGTACCACGCAGGGCGGGCTAACGCGCAGTATGGAATACGATGCTGCCGGACGGGTCATcc > 1:26066877/1‑67 (MQ=35) gCCGTCCGTACCACGCAGGGCGGGCTAACGCGCAGTATGGAATACGATGCTCCCGGACGGGTCATcc > 1:13110073/1‑67 (MQ=255) ccgtccgtACCACGCAGGGCGGGCTAACGCGCAGTATGGAATACGATGCTGCCGGACGGGTCATCCg < 1:3174199/67‑1 (MQ=35) ccgtccgtACCACGCAGGGCGGGCTAACGCGCAGTATGGAATACGATGCTGCCGGACGGGTCATCCg > 1:27369799/1‑67 (MQ=35) ccgtccgtACCACGCAGGGCGGGCTAACGCGCAGTATGGAATACGATGCTGCCGGACGGGTCATCCg > 1:29267/1‑67 (MQ=35) ccgtccgtACCACGCAGGGCGGGCTAACGCGCAGTATGGAATACGATGCTGCCGGACGGGTCATCCg < 1:31014888/67‑1 (MQ=35) ccgtccgtACCACGCAGGGCGGGCTAACGCGCAGTATGGAATACGATGCTGCCGGACGGGTCATCCg < 1:23882869/67‑1 (MQ=35) ccgtccgtACCACGCAGGGCGGGCTAACGCGCAGTATGGAATACGATGCTGCCGGACGGGTCATCCg < 1:10418170/67‑1 (MQ=35) ccgtccgtACCACGCAGGGCGGGCTAACGCGCAGTATGGAATACGATGCTGCCGGACGGGTCATCCg > 1:7468809/1‑67 (MQ=35) ccgtccgtACCACGCAGGGCGGGCTAACGCGCAGTATGGAATACGATGCTGCCGGACGGGTCATCCg > 1:19384608/1‑67 (MQ=35) ccgtccgtACCACGCAGGGCGGGCTAACGCGCAGTATGGAATACGATGCTGCCGGACGGGTCATCCg < 1:1078762/67‑1 (MQ=35) gtACCACGCAGGGCGGGCTAACGCGCAGTATGGAATACGATGCTGCCGGACGGGTCATCCGCCTGAcc < 1:11790483/68‑1 (MQ=35) aCCACGCAGGGCGGGCTAACGCGCAGTATGGAATACGATGCTGCCGGACGGGTCATCCGCCTGACCa < 1:11476081/67‑1 (MQ=35) aCCACGCAGGGCGGGCTAACGCGCAGTATGGAATACGATGCTGCCGGACGGGTCATCCGCCTGACCAg > 1:24228347/1‑68 (MQ=35) aCCACGCAGGGCGGGCTAACGCGCAGTATGGAATACGATGCTGCCGGACGGGTCATCCGCCTGACCAg > 1:29586543/1‑68 (MQ=35) aCCACGCAGGGCGGGCTAACGCGCAGTATGGAATACGATGCTGCCGGACGGGTCATCCGCCTGACCAg < 1:24933921/68‑1 (MQ=35) aCCACGCAGGGCGGGCTAACGCGCAGTATGGAATACGATGCTGCCGGACGGGTCATCCGCCTGACCAg < 1:129618/68‑1 (MQ=35) aCCACGCAGGGCGGGCTAACGCGCAGTATGGAATACGATGCTGCCGGACGGGTCATCCGCCTGACCAg > 1:4005745/1‑68 (MQ=35) ccACGCAGGGCGGGCTAACGCGCAGTATGGAATACGATGCTGCCGGACGGGTCATCCGCCTGACCAGt > 1:30536919/1‑68 (MQ=35) ccACGCAGGGCGGGCTAACGCGCAGTATGGAATACGATGCTGCCGGACGGGTCATCCGCCTGACCAGt < 1:19753834/68‑1 (MQ=35) ccACGCAGGGCGGGCTAACGCGCAGTATGGAATACGATGCTGCCGGACGGGTCATCCGCCTGACCAGt < 1:2980536/68‑1 (MQ=35) cACGCAGGGGGGGCTAACGCGCAGTATGGAATACGATGCTGCCGGACGGGTCATCCGCCTGACCAGTg < 1:3633948/68‑1 (MQ=25) cACGCAGGGCGGGCTAACGCGCAGTATGGAATACGATGCTGCCGGACGGGTCATCCGCCTGACCAGTg < 1:2028596/68‑1 (MQ=35) cACGCAGGGCGGGCTAACGCGCAGTATGGAATACGATGCTGCCGGACGGGTCATCCGCCTGACCAGTg < 1:14737403/68‑1 (MQ=35) cACGCAGGGCGGGCTAACGCGCAGTATGGAATACGATGCTGCCGGACGGGTCATCCGCCTGACCAGTg > 1:25100139/1‑68 (MQ=35) cACGCAGGGCGGGCTAACGCGCAGTATGGAATACGATGCTGCCGGACGGGTCATCCGCCTGACCAGTg < 1:1549062/68‑1 (MQ=35) cACGCAGGGCGGGCTAACGCGCAGTATGGAATACGATGCTGCCGGACGGGTCATCCGCCTGACCAGTg < 1:17861982/68‑1 (MQ=35) aCGCAGGGCGGGCTAACGCGCAGTATGGAATACGATGCTGCCGGACGGGTCATCCGCCTGACCAGTGa > 1:22643644/1‑68 (MQ=35) gCAGGGCGGGCTAACGCGCAGTTTGGAATACGATGCTGCCGGACGGGTCATCCGCCTGACCAGTGaaa > 1:26794366/1‑68 (MQ=25) gCAGGGCGGGCTAACGCGCAGTATGGAATACGATGCTGCCGGACGGGTCATCCGCCTGACCAGTGaaa > 1:27934031/1‑68 (MQ=35) gCAGGGCGGGCTAACGCGCAGTATGGAATACGATGCTGCCGGACGGGTCATCCGCCTGACCAGTGaaa > 1:12362719/1‑68 (MQ=35) gCAGGGCGGGCTAACGCGCAGTATGGAATACGATGCTGCCGGACGGGTCATCCGCCTGACCAGTGaaa > 1:15612350/1‑68 (MQ=35) gCAGGGCGGGCTAACGCGCAGTATGGAATACGATGCTGCCGGACGGGTCATCCGCCTGACCAGTGaaa > 1:13819393/1‑68 (MQ=35) gCAGGGCGGGCTAACGCGCAGTATGGAATACGATGCTGCCGGACGGGTCATCCGCCTGACCAGTGaaa > 1:1871982/1‑68 (MQ=35) gCAGGGCGGGCTAACGCGCAGTATGGAATACGATGCTGCCGGACGGGTCATCCGCCTGACCAGTGaaa > 1:13987835/1‑68 (MQ=35) gCAGGGCGGGCTAACGCGCAGTATGGAATACGATGCTGCCGGACGGGTCATCCGCCTGACCAGTGaaa > 1:14554818/1‑68 (MQ=35) gCAGGGCGGGCTAACGCGCAGTATGGAATACGATGCTGCCGGACGGGTCATCCGCCTGACCAGTGaaa > 1:23316765/1‑68 (MQ=35) aGGGCGGGCTAACGCGCAGTATGGAATACGATGCTGCCGGACGGGTCATCCGCCTGACCAGTGAAAAc > 1:866043/1‑68 (MQ=35) aGGGCGGGCTAACGCGCAGTATGGAATACGATGCTGCCGGACGGGTCATCCGCCTGACCAGTGAAAAc > 1:247368/1‑68 (MQ=35) ggcgggcTAACGCGCAGTATGGAATACGATGCTGCCGGACGGGTCATCCGCCTGACCAGTGAAAACg > 1:18854884/1‑67 (MQ=35) gcgggcTAACGCGCAGTATGGAATACGATGCTGCCGGACGGGTCATCCGCCTGACCAGTGAAAACGGc > 1:4987067/1‑68 (MQ=35) gcgggcTAACGCGCAGTATGGAATACGATGCTGCCGGACGGGTCATCCGCCTGACCAGTGAAAACGGc > 1:12715693/1‑68 (MQ=35) gcgggcTAACGCGCAGTATGGAATACGATGCTGCCGGACGGGTCATCCGCCTGACCAGTGAAAACGGc > 1:11710606/1‑68 (MQ=35) gcgggcTAACGCGCAGTATGGAATACGATGCTGCCGGACGGGTCATCCGCCTGACCAGTGAAAACGGc > 1:10044612/1‑68 (MQ=35) cgggcTAACCCGCAGTATGGAATACGATGCTGCCGGACGGGTCATCCGCCTGACCAGTGAAAACGGCa > 1:16842578/1‑68 (MQ=25) gggcTAACGCGCAGTATGGAATACGATGCTGCCGGACGGGTCATCCGCCTGACCAGTGAAAACGGCa > 1:14421117/1‑67 (MQ=35) gggcTAACGCGCAGTATGGAATACGATGCTGCCGGACGGGTCATCCGCCTGACCAGTGAAAACGGCAg < 1:13409286/68‑1 (MQ=35) ggcTAACGCGCAGTATGGAATACGATGCTGCCGGACGGGTCATCCGCCTGACCAGTGAAAACGGCAg > 1:31949243/1‑67 (MQ=35) gcTAACGCGCAGTATGGAATACGATGCTGCCGGACGGGTCATCCGCCTGACCAGTGAAAACGGCAGc < 1:8271147/67‑1 (MQ=35) cTAACGCGCAGTATGGAATACGATGCTGCCGGACGGGTCATCCGCCTGACCAGTTAAAACGgccgcc > 1:7699687/1‑67 (MQ=255) cTAACGCGCAGTATGGAATACGATGCTGCCGGACGGGTCATCCGCCTGACCAGTGAAAACGGCAGcc < 1:19085176/67‑1 (MQ=35) cTAACGCGCAGTATGGAATACGATGCTGCCGGACGGGTCATCCGCCTGACCAGTGAAAACGGCAGcc > 1:4415138/1‑67 (MQ=35) cTAACGCGCAGTATGGAATACGATGCTGCCGGACGGGTCATCCGCCTGACCAGTGAAAACGGCAGcc > 1:9066190/1‑67 (MQ=35) cTAACGCGCAGTATGGAATACGATGCTGCCGGACGGGTCATCCGCCTGACCAGTGAAAACGGCAGcc > 1:6642550/1‑67 (MQ=35) cTAACGCGCAGTATGGAATACGATGCTGCCGGACGGGTCATCCGCCTGACCAGTGAAAACGGCAGcc < 1:11262784/67‑1 (MQ=35) cTAACGCGCAGTATGGAATACGATGCTGCCGGACGGGTCATCCGCCTGACCAGTGAAAACGGCAGcc > 1:508633/1‑67 (MQ=35) cTAACGCGCAGTATGGAATACGATGCTGCCGGACGGGTCATCCGCCTGACCAGTGAAAACGGCAGcc > 1:15739291/1‑67 (MQ=35) cTAACGCGCAGTATGGAATACGATGCTGCCGGACGGGTCATCCGCCTGACCAGTGAAAACGGCAGcc < 1:27727924/67‑1 (MQ=35) cTAACGCGCAGTATGGAATACGATGCTGCCGGACGGGTCATCCGCCTGACCAGTGAAAACGGCAGcc < 1:15244873/67‑1 (MQ=35) cTAACGCGCAGTATGGAATACGATGCTGCCGGACGGGTCATCCGCCTGACCAGTGAAAACGGCAGcc > 1:14909803/1‑67 (MQ=35) cTAACGCGCAGTATGGAATACGATGCTGCCGGACGGGTCATCCGCCTGACCAGTGAAAACGGCAGcc < 1:25580301/67‑1 (MQ=35) tAACGCGCAGTATGGAATACGATGCTGCCGGACGGGTCATCCGCCTGACCAGTGAAAACGGCAGCcac < 1:19873988/68‑1 (MQ=33) aaCGCGCAGTATGGAATACGATGCTGCCGGACGGGTCATCCGCCTGACCAGTGAAAACGGCAGCcaca < 1:30792956/68‑1 (MQ=31) aaCGCGCAGTATGGAATACGATGCTGCCGGACGGGTCATCCGCCTGACCAGTGAAAACGGCAGCcac > 1:10156636/1‑67 (MQ=31) | GCGTGGGGAAAGGCCGTCCGTACCACGCAGGGCGGGCTAACGCGCAGTATGGAATACGATGCTGCCGGACGGGTCATCCGCCTGACCAGTGAAAACGGCAGCCACA > CP009273/3757397‑3757502 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |