New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 3851553 =429 (1.110)36 (0.120) 16/86 NT 10.8% coding (212/1494 nt) yidJ sulfatase/phosphatase superfamily protein
?CP009273 3851602 = 266 (0.900)coding (163/1494 nt) yidJ sulfatase/phosphatase superfamily protein

Only 100 of 932 total aligned reads displayed.

ATAGCCGGCATCCTTAAAGTAGCGCCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGA  >  CP009273/3851486‑3851620
                                                                   |                                                                   
gatagtctggcggcggaaggtattcgctttaattccgcctacacctgttcaccggtttgtacgcctgc                                                                     <  1:29134543‑M1/1‑1 (MQ=255)
gatagtctggcggcggaaggtattcgctttaattccgcctacacctgttcaccggtttgtacgcctgc                                                                     <  1:6772644‑M1/1‑1 (MQ=255)
  tagtctggcggcggaaggtattcgctttaattccgcctacacctgttcaccggtttgtacgcctgCAc                                                                   <  1:9200017‑M1/3‑1 (MQ=255)
  tagtctggcggcggaaggtattcgctttaattccgcctacacctgttcaccggtttgtacgcctgCAc                                                                   <  1:24750896‑M1/3‑1 (MQ=255)
  tagtctggcggcggaaggtattcgctttaattccgcctacacctgttcaccggtttgtacgcctgCAc                                                                   <  1:31628967‑M1/3‑1 (MQ=255)
  aGCCGGCATCCTTAAAGTAGCGCCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCAC                                                                   >  1:19187692‑M1/1‑68 (MQ=255)
   agtctggcggcggaaggtattcgctttaattccgcctacacctgttcaccggtttgtacgcctgcccg                                                                  <  1:7506496‑M1/4‑4 (MQ=255)
    ccGGCATCCTTAAAGTAGCGCCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGG                                                                 >  1:20496186‑M1/1‑68 (MQ=255)
    ccGGCATCCTTAAAGTAGCGCCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGG                                                                 >  1:32016937‑M1/1‑68 (MQ=255)
    ccGGCATCCTTAAAGTAGCGCCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGG                                                                 >  1:16496789‑M1/1‑68 (MQ=255)
     tctggcggcggaaggtattcgctttaattccgcctacacctgttcaccggtttgtacgcctgCACgg                                                                 <  1:31383452‑M1/5‑1 (MQ=255)
     cGGCATCCTTAAAGTATCGCCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGG                                                                 <  1:27137575‑M1/67‑1 (MQ=255)
     cGGCATCCTTAAAGTAGCGCCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGG                                                                 <  1:24463959‑M1/67‑1 (MQ=255)
     cGGCATCCTTAAAGTAGCGCCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGG                                                                 <  1:12903739‑M1/67‑1 (MQ=255)
      ctggcggcggaaggtattcgctttaattccgcctacacctgttcaccggtttgtacgcctgCACggg                                                                >  1:18918021‑M1/62‑67 (MQ=255)
      ctggcggcggaaggtattcgctttaattccgcctacacctgttcaccggtttgtacgcctgCACggg                                                                >  1:1420026‑M1/62‑67 (MQ=255)
      ctggcggcggaaggtattcgctttaattccgcctacacctgttcaccggtttgtacgcctgCACggg                                                                >  1:1255331‑M1/62‑67 (MQ=255)
       tggcggcggaaggtattcgctttaattccgcctacacctgttcaccggtttgtaagcctgCACGGGcc                                                              <  1:20795699‑M1/8‑1 (MQ=255)
         aTCCTTAAAGTAGCGCCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGG                                                            <  1:26458118‑M1/68‑1 (MQ=255)
         aTCCTTAAAGTAGCGCCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGG                                                            <  1:15180923‑M1/68‑1 (MQ=255)
         aTCCTTAAAGTAGCGCCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGG                                                            <  1:3855608‑M1/68‑1 (MQ=255)
          cggcggaaggtattcgctttaattccgcctacacctgttcaccggtttgtacgcctgCACGGGCCgg                                                            >  1:23491420‑M1/58‑67 (MQ=255)
          cggcggaaggtattcgctttaattccgcctacacctgttcaccggtttgtacgcctgCACGGGCCgg                                                            >  1:22804451‑M1/58‑67 (MQ=255)
          cggcggaaggtattcgctttaattccgcctacacctgttcaccggtttgtacgcctgCACGGGCCgg                                                            >  1:17071430‑M1/58‑67 (MQ=255)
          cggcggaaggtattcgctttaattccgcctacacctgttcaccggtttgtacgcctgCACGGGCCgg                                                            >  1:19682700‑M1/58‑67 (MQ=255)
          cggcggaaggtattcgctttaattccgcctacacctgttcaccggtttgtacgcctgCACGGGCCgg                                                            >  1:18427705‑M1/58‑67 (MQ=255)
           ggcggaaggtattcgctttaattccgcctacacctgttcaccggtttgtacgcctgCACGGGCCgg                                                            <  1:17687027‑M1/10‑1 (MQ=255)
             ttAAAGTAGCGCCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTg                                                        <  1:20112102/68‑1 (MQ=255)
             cggaaggtattcgctttaattccgcctacacctgttcaccggtttgtacgcctgCACGGGCCGGACt                                                         >  1:14610686‑M1/55‑67 (MQ=255)
             cggaaggtattcgctttaattccgcctacacctgttcaccggtttgtacgcctgCACGGGCCGGACt                                                         >  1:24225336‑M1/55‑67 (MQ=255)
             cggaaggtattcgctttaattccgcctacacctgttcaccggtttgtacgcctgCACGGGCCGGACt                                                         >  1:6160610‑M1/55‑67 (MQ=255)
              tAAAGTAGCGCCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTgg                                                       <  1:13332780/68‑1 (MQ=255)
              tAAAGTAGCGCCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTgg                                                       <  1:10486183/68‑1 (MQ=255)
              tAAAGTAGCGCCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTgg                                                       <  1:5851203/68‑1 (MQ=255)
              tAAAGTAGCGCCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTgg                                                       <  1:31837906/68‑1 (MQ=255)
              tAAAGTAGCGCCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTgg                                                       <  1:26952728/68‑1 (MQ=255)
              tAAAGTAGCGCCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTgg                                                       <  1:771592/68‑1 (MQ=255)
              tAAAGTAGCGCCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTgg                                                       <  1:21922111/68‑1 (MQ=255)
              tAAAGTAGCGCCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTgg                                                       <  1:16233941/68‑1 (MQ=255)
              tAAAGTAGCGCCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTgg                                                       <  1:21083502/68‑1 (MQ=255)
                aaGTAGCGCCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGtt                                                     <  1:1535184/68‑1 (MQ=255)
                 aGTAGCGCCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTa                                                    >  1:22469323/1‑68 (MQ=255)
                 aGTAGCGCCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTa                                                    >  1:30890866/1‑68 (MQ=255)
                 aGTAGCGCCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTa                                                    >  1:1108461/1‑68 (MQ=255)
                  gTAGCGCCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTa                                                    >  1:29570770/1‑67 (MQ=255)
                  gTAGCGCCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTa                                                    >  1:18008528/1‑67 (MQ=255)
                  gTAGCGCCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTa                                                    >  1:4084063/1‑67 (MQ=255)
                  gTAGCGCCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTa                                                    >  1:25325613/1‑67 (MQ=255)
                  gTAGCGCCCCATAGTGGAGAAGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGTCTGGTTa                                                    >  1:26807778/1‑67 (MQ=255)
                   tAGCGCCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGc                                                  >  1:30586439/1‑68 (MQ=255)
                   gtattcgctttaattccgcctacacctgttcaccggtttgtacgcctgCACGGGCCGGACTGGTTAGc                                                  <  1:21744685‑M1/20‑1 (MQ=255)
                    aGCGCCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAg                                                   <  1:28030926/66‑1 (MQ=255)
                    aGCGCCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGc                                                  <  1:28251483/67‑1 (MQ=255)
                    aGCGCCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCg                                                 <  1:15630610/68‑1 (MQ=255)
                       gcCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGt                                                <  1:15873642/66‑1 (MQ=255)
                            aTAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATAcc                                         <  1:8226424/68‑1 (MQ=255)
                            aTAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATAcc                                         <  1:23133940/68‑1 (MQ=255)
                            aTAGTGGAGATGTTTTGGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATAcc                                         <  1:23869199/68‑1 (MQ=255)
                            aTAGTGGAGATGGTTTAGCCTGGCGCGACGTTGCTGGTCCACGGGCCGGACTGGTTAGCGTAGATAcc                                         <  1:25037464/68‑1 (MQ=255)
                              aGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCgg                                       <  1:25980262/68‑1 (MQ=255)
                              aGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCgg                                       <  1:10341094/68‑1 (MQ=255)
                               gTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGt                                      >  1:4500352/1‑68 (MQ=255)
                               gTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGt                                      >  1:17574186/1‑68 (MQ=255)
                               gTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGt                                      >  1:1730272/1‑68 (MQ=255)
                                 ggAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTaa                                    <  1:9675330/68‑1 (MQ=255)
                                 ggAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTaa                                    >  1:5331508/1‑68 (MQ=255)
                                 ggAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTaa                                    >  1:27725408/1‑68 (MQ=255)
                                 ggAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTaa                                    >  1:14892032/1‑68 (MQ=255)
                                 ggAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTaa                                    <  1:13066112/68‑1 (MQ=255)
                                 ggAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTaa                                    >  1:25723602/1‑68 (MQ=255)
                                 ggAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTaa                                    <  1:12005253/68‑1 (MQ=255)
                                 ggAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTa                                     <  1:27440258/67‑1 (MQ=255)
                                 ggAGATGGTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGt                                      <  1:19366475/66‑1 (MQ=255)
                                   agaTGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAAt                                  >  1:1083262/1‑68 (MQ=255)
                                   agaTGTTTTAGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAAt                                  >  1:3017489/1‑68 (MQ=255)
                                      tGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGTCCGGACTGGTTAGCGTAGATACCGGTAAATag                                >  1:21432539‑M2/1‑65 (MQ=255)
                                      tGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGTTTAGCGTAGATACCGGTAAATagt                               >  1:4945534‑M2/1‑65 (MQ=255)
                                      tGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATag                                <  1:13741032‑M2/67‑3 (MQ=255)
                                      tGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGGTAGCGTAGCTACCGGTAAATag                                <  1:29891338‑M2/67‑3 (MQ=255)
                                      ggtTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGGTAGCGTAGATACCGGTAAATag                                >  1:11415122‑M2/2‑65 (MQ=255)
                                        tttttGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATagtcc                             <  1:7953974‑M2/68‑6 (MQ=255)
                                           cctgttcaccggtttgtacgcctgCACGGGCCGGACTGGGGAGCGTAGATACCGGTAAATAGTCCgg                           <  1:11750150‑M1/43‑1 (MQ=255)
                                              ccTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATagtccggcccg                       <  1:2866973‑M2/68‑12 (MQ=255)
                                               cTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATagtccggcccgt                      >  1:13457915‑M2/1‑56 (MQ=255)
                                               cTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATagtccggcccgt                      >  1:1870081‑M2/1‑56 (MQ=255)
                                                  accggtttgtacgcctgCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCgtgga                   >  1:697089‑M1/18‑66 (MQ=255)
                                                    gcgACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAgg                 <  1:30372964/68‑1 (MQ=255)
                                                    gcgACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAgg                 <  1:9440964/68‑1 (MQ=255)
                                                        cGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGt              >  1:12193327/1‑67 (MQ=255)
                                                        cGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGt              <  1:6418869/67‑1 (MQ=255)
                                                        cGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGt              <  1:10192167/67‑1 (MQ=255)
                                                            acgcctgCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACaa          <  1:16688523‑M1/60‑1 (MQ=255)
                                                             cgcctgCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACaaa         <  1:3454598‑M1/61‑1 (MQ=255)
                                                              tgGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAAcc       >  1:728276/1‑68 (MQ=255)
                                                              tgGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAAcc       <  1:22260975/68‑1 (MQ=255)
                                                                 tCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGt    >  1:5689811/1‑68 (MQ=255)
                                                                 tCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGt    >  1:10001232/1‑68 (MQ=255)
                                                                  ccACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGt    <  1:26160380/67‑1 (MQ=255)
                                                                  ccACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGt    <  1:8498468/67‑1 (MQ=255)
                                                                  ccACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGt    <  1:8959815/67‑1 (MQ=255)
                                                                   |                                                                   
ATAGCCGGCATCCTTAAAGTAGCGCCCCATAGTGGAGATGTTTTTGCCTGGCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGA  >  CP009273/3851486‑3851620

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.