New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 3851553 =429 (1.110)36 (0.120) 16/86 NT 10.8% coding (212/1494 nt) yidJ sulfatase/phosphatase superfamily protein
?CP009273 3851602 = 266 (0.900)coding (163/1494 nt) yidJ sulfatase/phosphatase superfamily protein

Only 100 of 686 total aligned reads displayed.

GCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTCCGCCGCCAGACTATCA  >  CP009273/3851536‑3851669
                                                                  |                                                                   
accggtttgtacgcctgcacgggccggactatttaccggtatctacgctaaccagtccggcccgtgCa                                                                    <  1:30460555‑M2/2‑1 (MQ=255)
  gcgACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAgg                                                                  <  1:14948485/68‑1 (MQ=255)
  gcgACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAgg                                                                  <  1:28026180/68‑1 (MQ=255)
  gcgACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAgg                                                                  <  1:27083399/68‑1 (MQ=255)
  cggtttgtacgcctgcacaggccggactatttaccggtatctacgctaaccagtccggcccgtgCAgg                                                                  <  1:10092936‑M2/4‑1 (MQ=255)
  cggtttgaacccctgcacgggccggactatttaccggtatctacgctaaccagtccggcccgtgCAgg                                                                  <  1:23505291‑M2/4‑1 (MQ=255)
  cggttggtacgcctgcacgggccggactatttaccggtatctacgctaaccagtccggcccgtgCAgg                                                                  <  1:18511679‑M2/4‑1 (MQ=255)
    gACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCg                                                                <  1:22014928/68‑1 (MQ=255)
    gACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCg                                                                <  1:22192319/68‑1 (MQ=255)
      cGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGt                                                               >  1:18752543/1‑67 (MQ=255)
      cGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGt                                                               >  1:6403609/1‑67 (MQ=255)
      atgtacgcctgcacgggccggactatttaccggaatctacgctaaccagtccggcccgtgCAGGCGt                                                               <  1:26135310‑M2/7‑1 (MQ=255)
       tgtccgcctgcacgggccggactatttaccggtatctacgctaaccagtccggcccgtgCAGGCGTAc                                                             <  1:20852855‑M2/9‑1 (MQ=255)
         tgttgGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACaa                                                           >  1:596176/1‑68 (MQ=255)
          gttgGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACaaa                                                          <  1:11114132/68‑1 (MQ=255)
          acgcctgCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACaa                                                           <  1:16688523‑M1/60‑1 (MQ=255)
           cgcctgCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACaaa                                                          <  1:19229992‑M1/61‑1 (MQ=255)
            tgGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAAcc                                                        <  1:28300345/68‑1 (MQ=255)
            tgGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAAcc                                                        <  1:27653903/68‑1 (MQ=255)
             cctgCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCg                                                       <  1:29323713‑M1/64‑1 (MQ=255)
               tgcacgggccggactacttaccggtatctacgctaaccagcccggcccgtgCAGGCGTACAAACCGGt                                                     <  1:23870973‑M2/17‑1 (MQ=255)
               tCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGt                                                     >  1:10001232/1‑68 (MQ=255)
               tCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGt                                                     >  1:29052572/1‑68 (MQ=255)
                ccACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGt                                                     <  1:26945465/67‑1 (MQ=255)
                  ACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGaa                                                  >  1:6122258‑M1/1‑68 (MQ=255)
                   CGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAAc                                                 <  1:22407506‑M1/68‑1 (MQ=255)
                     GGCCGGACTGGTTAGCGTTGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAg                                               <  1:3206764‑M1/68‑1 (MQ=255)
                      GCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAgg                                              <  1:13313179‑M1/68‑1 (MQ=255)
                      GCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAgg                                              <  1:17006324‑M1/68‑1 (MQ=255)
                      GCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAg                                               >  1:7490440‑M1/1‑67 (MQ=255)
                       ccggactatttaccggtatctacgctccccagtccggcccgtgCAGGCGTACAAACCGGTGAACAgg                                              <  1:11750150‑M2/24‑1 (MQ=255)
                       ccggactatttaccgcaatctacgctaccccgtccggcccgtgCAGGCGTACAAACCGGTGAACAgg                                              <  1:27236129‑M2/24‑1 (MQ=255)
                       CCGGACTTGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAgg                                              >  1:24915663‑M1/1‑67 (MQ=255)
                       CCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAgg                                              >  1:31489141‑M1/1‑67 (MQ=255)
                       CCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAgg                                              >  1:7913440‑M1/1‑67 (MQ=255)
                       CCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAgg                                              >  1:15293655‑M1/1‑67 (MQ=255)
                       CCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAgg                                              >  1:15602782‑M1/1‑67 (MQ=255)
                       CCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAgg                                              >  1:1650585‑M1/1‑67 (MQ=255)
                         GGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGgtgt                                           <  1:28824941‑M1/68‑1 (MQ=255)
                          gactatttaccggtatctacgctaaccagtccggcccgtgCAGGCGTACAAACCGGTGAACAGGTGTa                                          >  1:1950345‑M2/41‑68 (MQ=255)
                           ACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAg                                         <  1:31978233‑M1/68‑1 (MQ=255)
                           ACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAg                                         <  1:3717078‑M1/68‑1 (MQ=255)
                            CTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAg                                         <  1:23215075‑M1/67‑1 (MQ=255)
                            CTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAg                                         <  1:11931015‑M1/67‑1 (MQ=255)
                                ttaccggtatctacgctaaccagtccggcccgtgCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGa                                    <  1:8672351‑M2/34‑1 (MQ=255)
                                ttAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGa                                    >  1:30888657/1‑68 (MQ=255)
                                ttAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGa                                    >  1:9326163/1‑68 (MQ=255)
                                 tAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGa                                    <  1:14688762/67‑1 (MQ=255)
                                 tAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGa                                    <  1:4122831/67‑1 (MQ=255)
                                 tAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGa                                    <  1:25800700/67‑1 (MQ=255)
                                     gTAGATACCGTTAAATAGTCCTGACCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTaa                               >  1:29995113/1‑68 (MQ=255)
                                     gTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTaa                               >  1:9625071/1‑68 (MQ=255)
                                     gTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTaa                               >  1:6962804/1‑68 (MQ=255)
                                     gTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTaa                               >  1:7197784/1‑68 (MQ=255)
                                     gTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTaa                               >  1:29515345/1‑68 (MQ=255)
                                     gTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTaa                               >  1:21815981/1‑68 (MQ=255)
                                     gTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTaa                               >  1:20609756/1‑68 (MQ=255)
                                      tAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTaac                              >  1:13144860/1‑67 (MQ=255)
                                      tAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTaaa                              >  1:15799545/1‑68 (MQ=255)
                                      tAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTaaa                              >  1:24593352/1‑68 (MQ=255)
                                       aGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAg                             <  1:24422769/68‑1 (MQ=255)
                                       aGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAg                             <  1:8275570/68‑1 (MQ=255)
                                       aGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAg                             <  1:12341206/68‑1 (MQ=255)
                                         aTACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCg                           >  1:20103308/1‑68 (MQ=255)
                                         aTACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCg                           >  1:19710177/1‑68 (MQ=255)
                                          tACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGc                            <  1:7718475/66‑1 (MQ=255)
                                          tACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGc                            <  1:2133287/66‑1 (MQ=255)
                                          tACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGa                          >  1:25400303/1‑68 (MQ=255)
                                          tACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGa                          <  1:10217952/68‑1 (MQ=255)
                                           aCCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGaa                         >  1:14477534/1‑68 (MQ=255)
                                            ccGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAAt                        >  1:3446814/1‑68 (MQ=255)
                                                   aTAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTcc                 >  1:1074578/1‑68 (MQ=255)
                                                   aTAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTcc                 >  1:13826206/1‑68 (MQ=255)
                                                   aTAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTcc                 >  1:16272545/1‑68 (MQ=255)
                                                   aTAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTcc                 >  1:31410466/1‑68 (MQ=255)
                                                   aTAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTcc                 >  1:24263124/1‑68 (MQ=255)
                                                   aTAGTCCGGCCCGTGCAGGCGTACAAACCGGTAAACAGGTGTAGGCGGAATTAAAGCGAATACCTTcc                 >  1:12897879/1‑68 (MQ=255)
                                                     agtccggcccgtgCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGATTTAAAGCGAATACCTTccg                >  1:5447639‑M2/14‑67 (MQ=255)
                                                     agtccggcccgtgCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTccg                >  1:26717016‑M2/14‑67 (MQ=255)
                                                     agtccggcccgtgCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTGccg                >  1:8043210‑M2/14‑67 (MQ=255)
                                                      gtccggcccgtgCAGGCGTACAAACCGGTGAACAGGTGTAGGGCGAATTAAAGCGAATACCTTccgcc              >  1:18112469‑M2/13‑68 (MQ=255)
                                                        ccggcccgtgCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTccgccg             >  1:22804451‑M2/11‑67 (MQ=255)
                                                          ggcccgtgCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTCCGCCGCCa          >  1:4508205‑M2/9‑68 (MQ=255)
                                                            cccgtgCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTCCGCCGCCAg         >  1:13591668‑M2/7‑67 (MQ=255)
                                                            cccgtgCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTCCGCCGCCAg         >  1:19056119‑M2/7‑67 (MQ=255)
                                                            cccgtgCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTCCGCCGCCAg         >  1:9094076‑M2/7‑67 (MQ=255)
                                                            cccgtgCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTCCGCCGCCAg         >  1:12608966‑M2/7‑67 (MQ=255)
                                                             ccgtgCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTCCGCCGCCAg         >  1:16091902‑M2/6‑66 (MQ=255)
                                                              cgtgCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTCCGCCGCCAGACt      <  1:17650422‑M2/64‑1 (MQ=255)
                                                               gtgCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTCCGCCGCCAGACTa     <  1:11485764‑M2/65‑1 (MQ=255)
                                                               gtgCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTCCGCCGCCAGACTa     <  1:2635081‑M2/65‑1 (MQ=255)
                                                               gtgCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTCCGCCGCCAGACTa     <  1:30309641‑M2/65‑1 (MQ=255)
                                                               gtgCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTCCGCCGCCAGACTa     <  1:17371059‑M2/65‑1 (MQ=255)
                                                               gtgCAGGCGTACAAACCGGGGAACAGGTGGAGGCGGAATTAGAGCGAATACCTTCCGCCGCCAGACTa     <  1:6656543‑M2/65‑1 (MQ=255)
                                                                 gCAGGCTTACAAACCGGTTAACAGGGGTAGGCGGAATTAAAGCGAATACCTTCCGCCGCCAGACTATc   <  1:31208537‑M2/67‑1 (MQ=255)
                                                                 gCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTCCGCCGCCAGACTAt    <  1:4915216‑M2/66‑1 (MQ=255)
                                                                 gCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTCCGCCGCCAGACTAt    <  1:31787581‑M2/66‑1 (MQ=255)
                                                                 gCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTCCGCCGCCAGACTATc   <  1:28599596‑M2/67‑1 (MQ=255)
                                                                 gCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTCCGCCGCCAGACTATc   >  1:17125273‑M2/2‑68 (MQ=255)
                                                                  cAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTCCGCCGCCAGACTATCa  >  1:10498817/1‑68 (MQ=255)
                                                                  |                                                                   
GCGCGACGTTGTTGGTCCACGGGCCGGACTGGTTAGCGTAGATACCGGTAAATAGTCCGGCCCGTGCAGGCGTACAAACCGGTGAACAGGTGTAGGCGGAATTAAAGCGAATACCTTCCGCCGCCAGACTATCA  >  CP009273/3851536‑3851669

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.