| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 403544 | 424 (1.100) | 23 (0.070) | 9/96 | NT | 5.2% | coding (661/678 nt) | aroM | AroM family protein |
| ? | CP009273 | = 403571 | 472 (1.430) | intergenic (+10/‑62) | aroM/yaiE | AroM family protein/UPF0345 family protein | |||||
Only 100 of 585 total aligned reads displayed.
CCTGTCTTGCTGTCTAACGTATTGATTGCACGGCTGGCTGCGGAATTACTGGTGTAATTTTGCGTGACAGCCAGCGCCTCTGGCCCCTATAGTGAAGTAGATGTTCAACTACCAAACAGGGCCAGTTTATGCT > CP009273/403505‑403637 | ccTGTCTTGCTGTCTAACGTATTGATTGCACGGCTGGCTGCGGAATTACTGGTGTAATTTTGCGTGAc < 1:21521237‑M2/68‑2 (MQ=255)ccTGTCTTGCTGTCTAACGTATTGATTGCACGGCTGGCTGCGGAATTACTGGTGTAATTTTGCGTGAc > 1:29351908‑M2/1‑67 (MQ=255) tGTCTTGCTGTCTAACGTATTGATTGCACGGCTGGCTGCGGAATTACTGGTGTAATTTTGCGTGAca < 1:31750984‑M2/67‑3 (MQ=255) gTCTTGCTGTCTAACGTATTGATTGCACGGCTGGCTGCGGAATTACTGGTGTAATTTTGCGTGAcagc > 1:28431402‑M2/1‑64 (MQ=255) tCTTGCTGTCTAACGTATTGATTGCACGGCTGGCTGCGGAATTACTGGTGTAATTTTGCGTGAcagcc < 1:26671863‑M2/68‑6 (MQ=255) cTTGCTGTCTAACGTATTGATTGCACGGCTGGCTGCGGAATTACTGGTGTAATTTTGCGTGAcagcca > 1:15457027‑M2/1‑62 (MQ=255) tGCTGTCTAACGTATTGATTGCACGGCTGGCTGCGGAATTACTGGTGTAATTTTGCGTGAcagccagc > 1:6266889‑M2/1‑60 (MQ=255) tGTCTAACGTATTGATTGCACGGCTGGCTGCGGAATTACTGGTGTAATTTTGCGTGACAGCCAgcg > 1:11755015/1‑66 (MQ=255) tGTCTAACGTATTGATTGCACGGCTGGCTGCGGAATTACTGGTGTAATTTTGCGTGACAGCCAgcg > 1:8612011/1‑66 (MQ=255) cTAACGTATTGATTGCACGGCTGGCTGCGGAATTACTGGTGTAATTTTGCGTGACAGCCAGCGcc > 1:5133010/1‑65 (MQ=255) cTAACGTATTCATTGCACGGCTGGCGGCGGAATTACTGGTGTAATTTTGCGTGAcagccagccgtgca > 1:26246492‑M2/1‑54 (MQ=255) tAACGT‑TTGATTGCACGGCTGGCTGCGGAATTACTGGTGTAATTTTGCGTGACAGCCAGCGCCTCTgg < 1:11082161/68‑1 (MQ=255) aaCGTATTGATTGCACGGCTGGCTGCGGAATTACTGGTGTAATTTTGCGTGACAGCCAGCGCCTCTgg < 1:8841579/68‑1 (MQ=255) aaCGTATTGATTGCACGGCTGGCTGCGGAATTACTGCTGCAAATTTGCGTGAcagccagccgtgcaat > 1:25118193‑M2/1‑52 (MQ=255) cGTATTGATTGCACGGCTGGCTGCGGAATTACTGGTGTAATTTTGCGTGACAGCCAGCGCCTCTGGcc < 1:30474018/68‑1 (MQ=255) cGTATTGATTGCACGGCTGGCTGCGGAATTACTGGTGTAATTTTGCGTGACAGCCAGCGCCTCTGGcc < 1:8218234/68‑1 (MQ=255) cGTATTGATTGCACGGCTGGCTGCGGAATTACTGGTGTAATTTTGCGTGACAGCCAGCGCCTCTGGcc < 1:27724583/68‑1 (MQ=255) cGTATTGATTGCACGGCTGGCTGCGGAATTACTGGTGTAATTTTGCGTGACAGCCAGCGCCTCTGGcc < 1:14625381/68‑1 (MQ=255) cGTATTGATTGCACGGCTGGCTGCGGAATTACTGGTGTAATTTTGCGTGACAGCCAGCGCCTCTGGcc < 1:1654909/68‑1 (MQ=255) cGTATTGATTGCACGGCTGGCTGCGGAATTACTGGTGTAATTTTGCGTGACAGCCAACGCCTCTGGcc < 1:23762765/68‑1 (MQ=255) cGTATTGATTGCACGGCTGGCTGCGGAATTACTGGGGTAATTTTGCGTGACAGCCAGCGCCTCTGGcc < 1:21104429/68‑1 (MQ=255) cGTATTGATTGCACGGCTGGCGGCGGAATTACTGGTGTAATTTTGCGTGACAGCCAGCGCCTCTGGcc < 1:9638221/68‑1 (MQ=255) gTATTGATTGCACGGCTGGCTGCGGAATTACTGGTGTAATTTTGCGTGACAGCCAGCGCCTCTGGcc > 1:10026848/1‑67 (MQ=255) gTATTGATTGCACGGCTGGCTGCGGAATTACTGGTGTAATTTTGCGTGACAGCCAGCGCCTCTGGcc > 1:24350465/1‑67 (MQ=255) gTATTGATTGCACGGCTGGCTGCGGAATTACTGGTGTAATTTTGCGTGACAGCCAGCGCCTCTGGcc > 1:23631340/1‑67 (MQ=255) gTATTGATTGCACGGCTGGCTGCGGAATTACTGGTGTAATTTTGCGTGACAGCCAGCGCCTCTGGcc > 1:18717354/1‑67 (MQ=255) gTATTGATTGCACGGCTGGCTGCGGAATTACTGGTGTAATTTTGCGTGACAGCCAGCGCCTCTGGcc > 1:7430857/1‑67 (MQ=255) gTATTGATTGCACGGCTGGCTGCGGAATTACTGGTGTAATTTTGCGTGACAGCCAGCGCCTCTGGcc > 1:14884854/1‑67 (MQ=255) gTATTGATTGCACGGCTGGCTGCGGAATTACTGGTGTAATTTTGCGTGACAGCCAGCGCCTCTGGcc > 1:15029314/1‑67 (MQ=255) attgattgCACGGCTGGCTGCGGAATTACTGGTGTAATTTTGCGTGACAGCCAGCGCCTCTGGcccgt < 1:29948932/68‑3 (MQ=255) attgattgCACGGCTGGCTGCGGAATTACTGGTGTAATTTTGCGTGACAGCCAGCGCCTCTGGCCCCt > 1:13726453/1‑68 (MQ=255) attgattgCACGGCTGGCTGCGGAATTACTGGTGTAATTTTGCGTGACAGCCAGCGCCTCTGGCCCCt < 1:27422509/68‑1 (MQ=255) attgattgCACGGCTGGCTGCGGAATTACTGGTGTAATTTTGCGTGACAGCCAGCGCCTCTGGCCCCt > 1:25863598/1‑68 (MQ=255) attgattgCACGGCTGGCTGCGGAATTACTGGTGTAATTTTGCGTGACAGCCAGCGCCTCTGGCCCCt > 1:14338306/1‑68 (MQ=255) attgattgCACGGCTGGCTGCGGAATTACTGGTGTAATTTTGCGTGACAGCCAGCGCCTCTGGCCCCt < 1:3466432/68‑1 (MQ=255) attgattgCACGGCTGGCTGCGGAATTACTGGTGTAATTTTGCGTGACAGCCAGCGCCTCTGGCCCCt > 1:21908040/1‑68 (MQ=255) attgattgCACGGCTGGCTGCGGAATTACTGGTGTAATTTTGCGTGACAGCCAGCGCCTCTGGCCCCt < 1:11925289/68‑1 (MQ=255) attgattgCACGGCTGGCTGCGGAATTACTGGTGTAATTTTGCGTGACAGCCAGCGCCTCTGGCCCCt < 1:19744524/68‑1 (MQ=255) attgattgCACGGCTGGCTGCGGAATTACTGGTGTAATTTTGCGTGACAGCCAGCGCCTCTGGCCCCt < 1:16865869/68‑1 (MQ=255) attgattgCACGGCTGGCTGCGGAATTACTGGTGTAATTTTGCGTGACAGCCAGCGCCTCTGGCCCCt > 1:18455371/1‑68 (MQ=255) attgattgCACGGCTGGCTGCGGAATTACTGGTGTAATTTTGCGTGACAGCCAGCGCCTCTGGCCCCt < 1:20133493/68‑1 (MQ=255) attgattgCACGGCTGGCTGCGGAATTACTGGTGTAATTTTGCGTGACAGCCAGCGCCTCTGGCCCCt < 1:1026055/68‑1 (MQ=255) attgattgCACGGCTGGCTGCGGAATTACTGGTGTAATTTTGCGTGACAGCCAGCGCCTCTGGCCCCt < 1:10606059/68‑1 (MQ=255) aatgattgCACGGCTGGCTGCGGAATTACTGGTGTAATTTTGCGTGACAGCCAGCGCCTCTGGCCCCt < 1:32072266/66‑1 (MQ=255) ttgattgCACGGCTGGCTGCGGAATTACTGGTGTAATTTTGCGTGAcagccagccgtgcaatcaatac > 1:157097‑M2/1‑46 (MQ=255) tgattgCACGGCTGGCTGCGGAATTACTGGTGTAATTTTGCGTGACAGCCAGCGCCTCTGGCCCCtat < 1:2421569/68‑1 (MQ=255) tgattgCACGGCTGGCTGCGGAATTACTGGTGTAATTTTGCGTGACAGCCAGCGCCTCTGGCCCCtat < 1:24858050/68‑1 (MQ=255) tgattgCACGGCTGGCTGCGGAATTACTGGTGTAATTTTGCGTGACAGCCAGCGCCTCTGGCCCCtat < 1:17448202/68‑1 (MQ=255) tgattgCACGGCTGGCTGCGGAATTACTGGTGTAATTTTGCGTGACAGCCAGCGCCTCTGGCCCCtat > 1:36306/1‑68 (MQ=255) tgattgCACGGCTGGCTGCGGAATTACTGGTGTAATTTTGCGTGACAGCCAGCGCCTCTGGCCCCtat > 1:5006372/1‑68 (MQ=255) tgattgCACGGCTGGCTGCGGAATTACTGGTGTAATTTTGCGTGACAGCCAGCGCCTCTGGCCCCtat > 1:6732211/1‑68 (MQ=255) tgattgCACGGCTGGCTGCGGAATTACTGGTGTAATTTTGCGTGACAGCCAGCGCCTCTGGCCCCtat > 1:6061583/1‑68 (MQ=255) tgattgCACGGCTGGCTGCGGAATTACTGGTGTAATTTTGCGTGACAGCCAGCGCCTCTGGCCCCtat < 1:19411272/68‑1 (MQ=255) tgattgCACGGCTGGCTGCGGAATTACTGGTGTAATTTTGCGTGACAGCCAGCGCCTCTGGCCCCtat > 1:20942140/1‑68 (MQ=255) gattgCACGGCTGGCTGCGGAATTACTGGTGTAATTTTGCGTGACAGCCAGCGCCTCTGGccc < 1:25365041/63‑1 (MQ=255) gattgCACGGCTGGCTGCGGAATTACTGGTGTAATTTTGCGTGACAGCCAGCGCCTCTGGCCCCtata < 1:12334715/68‑1 (MQ=255) gattgCACGGCTGGCTGCGGAATTACTGGTGTAATTTTGCGTGACAGCCAGCGCCTCTGGCCCCtata > 1:9055502/1‑68 (MQ=255) ttgCACGGCTGGCTGCGGAATTACTGGTGTAATTTTGCGTGACAGCCAGCGCCTCTGGCCCCTATAGt < 1:2559302/68‑1 (MQ=255) ttgCACGGCTGGCTGCGGAATTACTGGTGTAATTTTGCGTGACAGCCAGCGCCTCTGGCCCCTATAGt < 1:12768580/68‑1 (MQ=255) ttgCACGGCTGGCTGCGGAATTACTGGTGTAATTTTGCGTGACAGCCAGCGCCTCTGGCCCCTATAGt < 1:13979428/68‑1 (MQ=255) ttgCACGGCTGGCTGCGGAATTACTGGTGTAATTTTGCGTGACAGCCAGCGCCTCTGGCCCCTATAGt < 1:1306615/68‑1 (MQ=255) tgCACGGCTGGCTGCGGAATTACTGGTGTAATTTTGCGTGACAGCCAGCGCCTCTGGCCCCTATAGTg < 1:9390309/68‑1 (MQ=255) gCACGGCTGGCTGCGGAATTACTGGTGTAATTTTGCGTGACAGCCAGCGCCTCTGGCCCCTATAGTGa < 1:22277212/68‑1 (MQ=255) aCGGCTGGCTGCGGAATTACTGGTGTAATTTTGCGTGACAGCCAGCGCCTCTGGCCCCTATAGTGaa < 1:417668/67‑1 (MQ=255) aCGGCTGGCTGCGGAATTACTGGTGTAATTTTGCGTGACAGCCAGCGCCTCTGGCCCCTATAGTGaa < 1:15282902/67‑1 (MQ=255) aCGGCTGGCTGCGGAATTACTGGTGTAATTTTGAGTGACAGCCCGCGCCTCTGGCCCCTATAGTGAAg > 1:24509621/1‑68 (MQ=255) cGGCTGGCTGCGGAATTACTGGTGTAATTTTGCGTGACAGCCAGCGCCTCTGGCCCCTATAGTGAAGt < 1:26569736/68‑1 (MQ=255) cGGCTGGCTGCGGAATTACTGGTGTAATTTTGCGTGACAGCCAGCGCCTCTGGCCCCTATAGTGAAGt < 1:26932593/68‑1 (MQ=255) ggctggctGCTGAATTACTGGTGTAATTTTGCGTGACAGCCAGCGCCTCTGGCCCCTATAGTGAAGTa < 1:16703002/68‑1 (MQ=255) gctggctgCGGAATTACTGGTGTAATTTTGCGTGACAGCCAGCGCCTCTGGCCCCTATAGTGAAGTAg > 1:7015996/1‑68 (MQ=255) gctggctgCGGAATTACTGGTGTAATTTTGCGTGACAGCCAGCGCCTCTGGCCCCTATAGTGAAGTAg > 1:5606319/1‑68 (MQ=255) gCGGAATTACTGGTGTAATTTTGCGTGACAGCCAGCGCCTCTGGCCCCTATAGTGAAGTAGATGTTCa < 1:31379172/68‑1 (MQ=255) gAATTACTGGTGTAATTTTGCGTGACAGCCAGCGCCTCTGGCCCCTATAGTGAAGTAGATGTTCAACt > 1:1628877/1‑68 (MQ=255) aaTTACTGGTGTAATTTTGCGTGACAGCCAGCGCCTCTGGCCCCTATAGTGAAGTAGATGTTCAACt < 1:28055043/67‑1 (MQ=255) aaTTACTGGTGTAATTTTGCGTGACAGCCAGCGCCTCTGGCCCCTATAGTGAAGTAGATGTTCAACt < 1:7239026/67‑1 (MQ=255) aaTTACTGGTGTAATTTTGCGTGACAGCCAGCGCCTCTGGCCCCTATAGTGAAGTAGATGTTCAACt < 1:14202966/67‑1 (MQ=255) aaTTACTGGTGTAATTTTACGTGACAGCCAGCGCCTCTGGCCCCTATAGTGAAGTAGATGTTCAACt < 1:22116802/67‑1 (MQ=255) aTTACTGGTGTAATTTTGCGTGACAGCCAGCGCCTCTGGCCCCTATAGTGAAGTAGATGTTCAACTAc < 1:28596673/68‑1 (MQ=255) aTTACTGGTGTAATTTTGCGTGACAGCCAGCGCCTCTGGCCCCTATAGTGAAGTAGATGTTCAACTAc < 1:18281055/68‑1 (MQ=255) tGGTGTAATTTTGCGTGACAGCCAGCGCCTCTGGCCCCTATAGTGAAGTAGATGTTCAACTACCAAAc > 1:15923987/1‑68 (MQ=255) tGGTGTAATTTTGCGTGACAGCCAGCGCCTCTGGCCCCTATAGTGAAGTAGATGTTCAACTACCAAAc > 1:5300308/1‑68 (MQ=255) tGGTGTAATTTTGCGTGACAGCCAGCGCCTCTGGCCCCTATAGTGAAGTAGATGTTCAACTACCAAAc > 1:2264036/1‑68 (MQ=255) tGGTGTAATTTTGCGTGACAGCCAGCGCCTCTGGCCCCTATAGTGAAGTAGATGTTCAACTACCAAAc > 1:27189751/1‑68 (MQ=255) tGGTGTAATTTTGCGTGACAGCCAGCGCCTCTGGCCCCTATAGTGAAGTAGATGTTCAACTACCAAAc > 1:14442642/1‑68 (MQ=255) gtAATTTTGCGTGACAGCCAGCGCCTCTGGCCCCTATAGTGAAGTAGATGTTCAACTACCAAACAgg < 1:22878640/67‑1 (MQ=255) gtAATTTTGCGTGACAGCCAGCGCCTCTGGCCCCTATAGTGAAGTAGATGTTCAACTACCAAACAgg < 1:24034902/67‑1 (MQ=255) gtAATTTTGCGTGACAGCCAGCGCCTCTGGCCCCTATAGTGAAGTAGATGTTCAACTACCAAACAgg < 1:20347700/67‑1 (MQ=255) gtAATTTTGCGTGACAGCCAGCGCCTCTGGCCCCTATAGTGAAGTAGATGTTCAACAACCAAACAggg < 1:134383/68‑1 (MQ=255) ttttTCGTGACAGCCAGCGCCTCTGGCCCCTATAGTTAAGTAGATGTTCAACTACCAAACAGGGCCAg < 1:7625113/68‑1 (MQ=255) ttttGCGTGACAGCCAGCGCCTCTGGCCCCTATAGTGAAGTAGATGTTCAACTACCAAACAGGGCCAg < 1:19076268/68‑1 (MQ=255) ttttGCGTGACAGCCAGCGCCTCTGGCCCCTATAGTGAAGTAGATGTTCAACTACCAAACAGGGCCAg < 1:31002745/68‑1 (MQ=255) ttttGCGTGACAGCCAGCGCCTCTGGCCCCTATAGTGAAGTAGATGTTCAACTACCAAACAGGGCCAg < 1:18847344/68‑1 (MQ=255) ttttGCGTGACAGCCAGCGCCTCTGGCCCCTATAGTGAAGTAGATGTTCAACTACCAAACAGGGCCAg < 1:8009219/68‑1 (MQ=255) ttttGCGTGACAGCCAGCGCCTCTGGCCCCTATAGTGAAGTAGATGTTCAACTACCAAACAGGGCCAg < 1:1315092/68‑1 (MQ=255) tttGCGTGACAGCCAGCGCCTCTGGCCCCTATAGTGAAGTAGATGTTCAACTACCAAACAGGGCCAGt < 1:21186254/68‑1 (MQ=255) tttGCGTGACAGCCAGCGCCTCTGGCCCCTATAGTGAAGTAGATGTTCAACTACCAAACAGGGCCAGt < 1:17878874/68‑1 (MQ=255) tGCGTGACAGCCAGCGCCTCTGGCCCCTATAGTGAAGTAGATGTTCAACTACCAAACAGGGCCAGttt < 1:30845923/68‑1 (MQ=255) gACAGCCAGCGCCTCTGGCCCCTATAGTGAAGTAGATGTTCAACTACCAAACAGGGCCAGTTTATGCt < 1:11486220/68‑1 (MQ=255) gACAGCCAGCGCCTCTGGCCCCTATAGTGAAGTAGATGTTCAACTACCAAACAGGGCCAGTTTATGCt < 1:23373945/68‑1 (MQ=255) gACAGCCAGCGCCTCTGGCCCCTATAGTGAAGTAGATGTTCAACTACCAAACAGGGCCAGTTTATGCt < 1:4595891/68‑1 (MQ=255) | CCTGTCTTGCTGTCTAACGTATTGATTGCACGGCTGGCTGCGGAATTACTGGTGTAATTTTGCGTGACAGCCAGCGCCTCTGGCCCCTATAGTGAAGTAGATGTTCAACTACCAAACAGGGCCAGTTTATGCT > CP009273/403505‑403637 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |