| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 1280805 | 343 (0.890) | 18 (0.050) | 7/96 | NT | 6.3% | coding (211/711 nt) | narJ | molybdenum‑cofactor‑assembly chaperone subunit (delta subunit) of nitrate reductase 1 |
| ? | CP009273 | = 1280852 | 243 (0.740) | coding (258/711 nt) | narJ | molybdenum‑cofactor‑assembly chaperone subunit (delta subunit) of nitrate reductase 1 | |||||
Only 100 of 404 total aligned reads displayed.
ACTGTTCGACCGTGGCCGCGCCACGTCACTGTTGCTGTTTGAACATGTGCACGGCGAATCCCGCGACCGCGGCCAGGCGATGGTGGACCTGCTGGCGCAGTACGAGCAGCACGGCTTGCAGTTAAACAGCCGC > CP009273/1280786‑1280918 | aCTGTTCGACCGTGGCCGCGCCACGTCACTGTTGCTGTTTGAACATGTGCACGGCGAATCCCGCGACc < 1:11138263‑M2/68‑2 (MQ=255)aCTGTTCGACCGTGGCCGCGCCACGTCACTGTTGCTGTTTGAACATGTGCACGGCGAATCCCGCGACc < 1:11313345‑M2/68‑2 (MQ=255)aCTGTTCGACCGTGGCCGCGCCACGTCACTGTTGCTGTTTGAACATGTGCACGGCGAATCCCGCGACc < 1:19431382‑M2/68‑2 (MQ=255)aCTGTTCGACCGTGGCCGCGCCACGTCACTGTTGCTGTTTGAACATGTGCACGGCGAATCCCGCGACc < 1:28234004‑M2/68‑2 (MQ=255)aCTGTTCGACCGTGGCCGCGCCACGTCACTGTTGCTGTTTGAACATGTGCACGGCGAATCCCGCGACc > 1:29406380‑M2/1‑67 (MQ=255)aCTGTTCGACCGTGGCCGCGCCACGTCACTGTTGCTGTTTGAACATGTGCACGGCGAATCCCGCGACc < 1:30888226‑M2/68‑2 (MQ=255)aCTGTTCGACCGTGGCCGCGCCACCTCACTGTTGCTGTTTGAACATGTGCACCGCGAATCCCGCGACc < 1:25989567‑M2/68‑2 (MQ=255) cTGTTCGACCGTGGCCGCGCCACGTCACTGTTGCTGTTTGAACATGTGCACGGCGAATCCCGCGACc < 1:20865722‑M2/67‑2 (MQ=255) gTTCGACCGTGGCCGCGCCACGTCACTGTTGCTGTTTGAACATGTGCACGGCGAATCCCGCGACcgcg < 1:10716961‑M2/68‑5 (MQ=255) gTTCGACCGTGGCCGCGCCACGTCACTGTTGCTGTTTGAACATGTGCACGGCGAATCCCGCGACcgcg > 1:53247‑M2/1‑64 (MQ=255) tCGACCGTGGCCGCGCCACGTCACTGTTGCTGTTTGAACATGTGCACGGCGAATCCCGCGACcgcggc > 1:1603548‑M2/1‑62 (MQ=255) aCCGTGGCCGCGCCCCGTCACTGTTGCTGTTTGAACATGTGCACGGCGAATCCCGCGACcgcggccgg < 1:14230102‑M2/68‑10 (MQ=255) aCCGTGGCCGCGCCACGTCACTGTTGCTGTTTGAACATGTGCACGGCGAATCCCGCGCCCGCGGCCAg > 1:4819641/1‑68 (MQ=255) aCCGTGGCCGCGCCACGTCACTGTTGCTGTTTGAACATGTGCACGGCGAATCCCGCGACCGCGGCCAg > 1:18323486/1‑68 (MQ=255) aCCGTGGCCGCGCCACGTCACTGTTGCTGTTTGAACATGTGCACGGCGAATCCCGCGACCGCGGCCAg > 1:14882694/1‑68 (MQ=255) aCCGTGGCCGCGCCACGTCACTGTTGCTGTTTGAACATGTGCACGGCGAATCCCGCGACCGCGGCCAg > 1:26512266/1‑68 (MQ=255) ccGTGGCCGCGCCACGTCACTGTTGCTGTTTGAACATGTGCACGGCGAATCCCGCGACCGCGGCCAgg < 1:22411036/68‑1 (MQ=255) ccGTGGCCGCGCCACGTCACTGTTGCTGTTTGAACATGTGCACGGCGAATCCCGCGACCGCGGCCAgg < 1:19962525/68‑1 (MQ=255) cGTGGCCGCGCCACGTCACTGTTGCTGTTTGAACATGTGCACGGCGAATCCCGCGACCGCGGCCAGGc > 1:1522023/1‑68 (MQ=255) cGTGGCCGCGCCACGTCACTGTTGCTGTTTGAACATGTGCACGGCGAATCCCGCGACCGCGGCCAGGc > 1:12203200/1‑68 (MQ=255) cGTGGCCGCGCCACGTCACTGTTGCTGTTTGAACATGTGCACGGCGAATCCCGCGACCGCGGCCAGGc > 1:31869280/1‑68 (MQ=255) cGTGGCCGCGCCACGTCACTGTTGCTGTTTGAACATGTGCACGGCGAATCCCGCGACCGCGGCCAGGc > 1:6008682/1‑68 (MQ=255) gTGGCCGCGCCACGTAACTGTTGCTGGTTGAACATGTGCACGGCGAAACCCGCGACcgcggccacggt > 1:27616008‑M2/1‑56 (MQ=255) ggCCGCGCCACGTCACTGTTGCTGTTTGAACATGTGCACGGCGAATCCCGCGACcgcggccccggtcg > 1:13395022‑M2/1‑54 (MQ=255) GGCCGCGCCACGTCACTGTTGCTGTTTGAACATGTGCACGGCGAATCCCGCGACCGCGGCCAGGCGAt > 1:5861476‑M1/1‑68 (MQ=255) GGCCGCGCCACGTCACTGTTGCTGTTTGAACATGTGCACGGCGAATCCCGCGACCGCGGCCAGGCGAt > 1:15088189‑M1/1‑68 (MQ=255) GGCCGCGCCACGTCACTGTTGCTGTTTGAACATGTGCACGGCGAATCCCGCGACCGCGGCCAGGCGAt > 1:21455466‑M1/1‑68 (MQ=255) ccGCGCCACGTCACTGTTGCTGTTTGAACATGTGCACGGCGAATCCCGCGACcgcggccacggtcga > 1:18666346‑M2/1‑52 (MQ=255) CCGCGCCACGTCACTGTTGCTGTTTGAACATGTGCCCGGCGAATCCCGCGACCGCGGCCAGGCGAtgg < 1:1549061‑M1/68‑1 (MQ=255) CCGCGCCACGTCACTGTTGCTGTTTGAACATGTGCACGGCGAATCCCGCGACCGCGGCCAGGCGAtgg < 1:26969711‑M1/68‑1 (MQ=255) CCGCGCCACGTCACTGTTGCTGTTTGAACATGTGCACGGCGAATCCCGCGACCGCGGCCAGGCGAtgg < 1:18155697‑M1/68‑1 (MQ=255) CCGCGCCACGTCACTGTTGCTGTTTGAACATGTGCACGGCGAATCCCGCGACCGCGGCCAGGCGAtg > 1:6840745‑M1/1‑67 (MQ=255) CCGCGCCACGTCACTGTTGCTGTTTGAACATGTGCACGGCGAATCCCGCGACCGCGGCCAGGCGAtg > 1:23016435‑M1/1‑67 (MQ=255) CCGCGCCACGTCACTGTTGCTGTTTGAACATGTGCACGGCGAATCCCGCGACCGCGGCCAGGCGAtg > 1:24975968‑M1/1‑67 (MQ=255) GCCACGTCACTGTTGCTGTTTGAACATGTGCACGGCGAATCCCGCGACCGCGGCCAGGCGAtggtgg > 1:3365921‑M1/1‑67 (MQ=255) cACGTCACTGTTGCTGTTTGAACATGTGCACGGCGAATCCCGCGACcgcggccacggtcgaacagttc > 1:17812482‑M2/1‑46 (MQ=255) cACGTCACTGTTGCTGTTTGAACATGTGCACGGCGAATCCCGCGACcgcggccacggtcgaacagttc > 1:16900999‑M2/1‑46 (MQ=255) cACGTCACTGTTGCTGTTTGAACATGTGCACAGCGAATCCCGCGACcgcggccacggtcgaacagttc > 1:24828429‑M2/1‑46 (MQ=255) cACGTCACTGTTGCTGTTTGAACATGGGCACGGCGAATCCCGCGACcgcggccacggtcgaacagttc > 1:19017953‑M2/1‑46 (MQ=255) cGTCCCTGTTGCTGTTTGAACATGTGCACGGCGAATCCCGCGACCGCGGCCAGGCGATGGTGGACctg < 1:22021482/68‑1 (MQ=255) cGTCACTGTTGCTGTTTGAACATGTGCACGGCGAATCCCGCGACCGCGGCCAGGCGATGGTGGACctg < 1:12911652/68‑1 (MQ=255) cGTCACTGTTGCTGTTTGAACATGTCCACGGCGAATCCCGCGACcgcggccacggtcgaacagttcgc > 1:2390740‑M2/1‑44 (MQ=255) cGTCACTGTTGCTGTTTGAACAGGTGCACGGCGAATCCCGCGACcgcggccacggtcgaacagttcgc > 1:31385896‑M2/1‑44 (MQ=255) tCACTGTTGCTGTTTGAACATGTGCACGGCGAATCCCGCGACCGCGGCCAGGCGATGGTGGACct > 1:11661728/1‑65 (MQ=255) aCTGTTGCTGTTTGAACATGTGCACGGCGAATCCCGCGACCGCGGCCAGGCGATGGTGGACctgctg > 1:32119815/1‑67 (MQ=255) aCTGTTGCTGTTTGAACATGTGCACGGCGAATCCCGCGACCGCGGCCAGGCGATGGTGGACctgctg > 1:912155/1‑67 (MQ=255) aCTGTTGCTGTTTGAACATGTGCACGGCGAATCCCGCGACCGCGGCCAGGCGATGGTGGACCTGCTgg < 1:9682341/68‑1 (MQ=255) aCTGTTGCTGTTTGAACATGTGCACGGCGAATCCCGCGACCGCGGCCAGGCGATGGTGGACCTGCTgg < 1:28585396/68‑1 (MQ=255) aCTGTTGCTGTTTGAACATGTGCACGGCGAATCCCGCGACCGCGGCCAGGCGATGGTGGACCTGCTgg < 1:2326174/68‑1 (MQ=255) tGCTGTTTGAACATGTGCACGGCGAATCCCGCGACCGCGGCCAGGCGATGGTGGACCTGCTTGCGCa < 1:26905609/67‑1 (MQ=255) tGCTGTTTGAACATGTGCACGGCGAATCCCGCGACCGCGGCCAGGCGATGGTGGACCTGCTGGCGCa < 1:23432979/67‑1 (MQ=255) tGCTGTTTGAACATGTGCACGGCGAATCCCGCGACCGCGGCCAGGCGATGGTGGACCTGCTGGCGCAg < 1:16355319/68‑1 (MQ=255) tGCTGTTTGAACATGTGCACGGCGAATCCCGCGACCGCGGCCAGGCGATGGTGGACCTGCTGGCGCAg < 1:12979302/68‑1 (MQ=255) tGCTGTTTGAACATGTGCACGGCGAATCCCGCGACCGCGGCCAGGCGATGGTGGACCTGCTGGCGCAg > 1:3710532/1‑68 (MQ=255) tGCTGTTTGAACATGTGCACGGCGAATCCCGCGACCGCGGCCAGGCGATGGTGGACCTGCTGGCGCAg > 1:31794694/1‑68 (MQ=255) tGCTGTTTGAACATGTGCACGGCGAATCCCGCGACCGCGGCCAGGCGATGGTGGACCTGCTGGCGCAg < 1:30331341/68‑1 (MQ=255) tGCTGTTTGAACATGTGCACGGCGAATCCCGCGACCGCGGCCAGGCGATGGTGGACCTGCTGGCGCAg > 1:28888395/1‑68 (MQ=255) tGCTGTTTGAACATGTGCACGGCGAATCCCGCGACCGCGGCCAGGCGATGGTGGACCTGCTGGCGCAg < 1:21148028/68‑1 (MQ=255) tGCTGTTTGAACATGTGCACGGCGAATCCCGCGACCGCGGCCAGGCGATGGTGGACCTGCTGGCGCAg < 1:24473323/68‑1 (MQ=255) gcggTTTGAACATGTGCACGGCGAATCCCGCGACCGCGGCCAGGCGATGGTGGACCTGCTGGCGCAGt < 1:20547064/65‑1 (MQ=255) gCTGTTTGAACATGTGCACGGCGAATCCCGCGACCGCGGCCAGGCGATGGTGGACCTGCTGGCGCAGt > 1:18475962/1‑68 (MQ=255) gCTGTTTGAACATGTGCACGGCGAATCCCGCGACCGCGGCCAGGCGATGGTGGACCTGCTGGCGCAGt < 1:1719790/68‑1 (MQ=255) gCTGTTTGAACATGTGCACGGCGAATCCCGCGACCGCGGCCAGGCGATGGTGGACCTGCTGGCGCAGt < 1:14026333/68‑1 (MQ=255) gCTGTTTGAACATGTGCACGGCGAATCCCGCGACCGCGGCCAGGCGATGGTGGACCTGCTGGCGCAGt < 1:157713/68‑1 (MQ=255) cctGTTTCAACATGTCCACGCCGAATCCCGCGCCcgcgcccccggtcgaacagttcgctgtactgcg > 1:8636120‑M2/2‑34 (MQ=255) tGTTTGAACATGTGCACGGCGAATCCCGCGACCGCGGCCAGGCGATGGTGGACCTGCTGGCGCAGTa < 1:8037083/67‑1 (MQ=255) tGTTTGAACATGTGCACGGCGAATCCCGCGACCGCGGCCAGGCGATGGTGGACCTGCTGGCGCAGTAc > 1:10437658/1‑68 (MQ=255) tGTTTGAACATGTGCACGGCGAATCCCGCGACCGCGGCCAGGCGATGGTGGACCTGCTGGCGCAGTAc > 1:13503024/1‑68 (MQ=255) ttGAACATGTGCACGGCGAATCCCGCGACCGCGGCCAGGCGATGGTGGACCTGCTGGCGCAGTACGa < 1:22317200/67‑1 (MQ=255) gAACATGTGCACGGCGAATCCCGCGACCGCGGCCAGGCGATGGTGGACCTGCTGGCGCAGTACGagca > 1:16639993/1‑68 (MQ=255) gAACATGTGCACGGCGAATCCCGCGACCGCGGCCAGGCGATGGTGGACCTGCTGGCGCAGTACGagca < 1:12249704/68‑1 (MQ=255) aCATGTGCACGGCGAATCCCGCGACCGCGGCCAGGCGATGGTGGACCTGCTGGCGCAGTACGagcagc < 1:29657302/68‑1 (MQ=255) cATGTGCACGGCGAATCCCGCGACCGCGGCCAGGCGATGGTGGACCTGCTGGCGCAGTACGagcagc > 1:26702289/1‑67 (MQ=255) cATGTGCACGGCGAATCCCGCGACCGCGGCCAGGCGATGGTGGACCTGCTGGCGCAGTACGagcagc > 1:1974788/1‑67 (MQ=255) aTGTGCACGGCGAATCCCGCGACcgcggccacggtcgaacagttcgctgtactgcgcctgggcatcga > 1:11598131‑M2/1‑23 (MQ=255) tgtgCACGGCGAATCCCGCGACCGCGGCCAGGCGATGGTGGACCTGCTGGCGCAGTACGAGCAGCACg > 1:21028786/1‑68 (MQ=255) gtgCACGGCGAATCCCGCGACCGCGGCCAGGCGATGGTGGACCTGCTGGCGCAGTACGAGCAGCACgg < 1:27385908/68‑1 (MQ=255) gCACGGCGAATCCCGCGACCGCGGCCAGGCGATGGTGGACCTGCTGGCGCAGTACGAGCAGCACGGc < 1:29915811/67‑1 (MQ=255) gCACGGCGAATCCCGCGACCGCGGCCAGGCGATGGTGGACCTGCTGGCGCAGTACGAGCAGCACGGc < 1:25371583/67‑1 (MQ=255) gCACGGCGAATCCCGCGACCGCGGCCAGGCGATGGTGGACCTGCTGGCGCAGTACGAGCAGCACGGc < 1:6348706/67‑1 (MQ=255) gCACGGCGAATCCCGCGACCGCGGCCAGGCGATGGTGGACCTGCTGGCGCAGTACGAGCAGCACGGCt > 1:29249401/1‑68 (MQ=255) gCACGGCGAATCCCGCGACCGCGGCCAGGCGATGGTGGACCTGCTGGCGCAGTACGAGCAGCACGGCt > 1:16256299/1‑68 (MQ=255) ggCGAATCCCGCGACCGCGGCCAGGCGATGGTGGACCTGCTTGCGCAGTACGAGCAGCACGGCTTGCa < 1:22758665/68‑1 (MQ=255) ggCGAATCCCGCGACCGCGGCCAGGCGATGGTGGACCTGCTGGCGCAGTACGAGCAGCACGGCTTGCa < 1:11031789/68‑1 (MQ=255) ggCGAATCCCGCGACCGCGGCCAGGCGATGGTGGACCTGCTGGCGCAGTACGAGCAGCACGGCTTGCa < 1:14523776/68‑1 (MQ=255) ggCGAATCCCGCGACCGCGGCCAGGCGATGGTGGACCTGCTGGCGCAGTACGAGCAGCACGGCTTGCa < 1:25779120/68‑1 (MQ=255) ggCGAATCCCGCGACCGCGGCCAGGCGATGGTGGACCTGCTGGCGCAGTACGAGCAGCACGGCTTGCa < 1:3849187/68‑1 (MQ=255) ggCGAATCCCGCGACCGCGGCCAGGCGATGGTGGACCTGCTGGCGCAGTACGAGCAGCACGGCTTGCa < 1:7365072/68‑1 (MQ=255) ggCGAATCCCGCGACCGCGGCCAGGCGATGGTGGACCTGCTGGCGCAGTACGAGCAGCACGGCTTGCa < 1:570004/68‑1 (MQ=255) ggCGAATCCCGCGACCGCGGCCAGGCGATGGTGGACCTGCTGGCGCAGTACGAGCAGCACGGCTTGCa < 1:6226356/68‑1 (MQ=255) gCGAATCCCGCGACCGCGGCCAGGCGATGGTGGACCTGCTGGCGCAGTACGAGCAGCACGGCTTGCAg > 1:30605723/1‑68 (MQ=255) cGAATCCCGCGACCGCGGCCAGGCGATGGTGGACCTGCTGGCGCAGTACGAGCAGCACGGCTTGCAGt > 1:27967736/1‑68 (MQ=255) gAATCCCGCGCCCGCGGCCAGGCGATGGTGGACCTGCTGGCGCAGTACGAGCAGCACGGCTTGCAGtt > 1:8225965/1‑68 (MQ=255) gAATCCCGCGACCGCGGCCAGGCGATGGTGGACCTGCTGGCGCAGTACGAGCAGCACGGCTTGCAGtt < 1:12425327/68‑1 (MQ=255) gAATCCCGCGACCGCGGCCAGGCGATGGTGGACCTGCTGGCGCAGTACGAGCAGCACGGCTTGCAGtt < 1:7637588/68‑1 (MQ=255) gAATCCCGCGACCGCGGCCAGGCGATGGTGGACCTGCTGGCGCAGTACGAGCAGCACGGCTTGCAGt < 1:31346849/67‑1 (MQ=255) cgACCGCGGCCAGGCGATGGTGGACCTGCTGGCGCAGTACGAGCAGCACGGCTTGCAGTTAAACAGcc > 1:29053936/1‑68 (MQ=255) gACCGCGGCCAGGCGATGGTGGACCTGCTGGCGCAGTACGAGCAGCACGGCTTGCAGTTAAACAGcc > 1:9181158/1‑67 (MQ=255) aCCGCGGCCAGGCGATGGTGGACCTGCTGGCGCAGTACGAGCAGCACGGCTTGCAGTTAAACAGCcgc > 1:25182116/1‑68 (MQ=255) aCCGCGGCCAGGCGATGGTGGACCTGCTGGCGCAGTACGAGCAGCACGGCTTGCAGTTAAACAGCcgc > 1:5163905/1‑68 (MQ=255) | ACTGTTCGACCGTGGCCGCGCCACGTCACTGTTGCTGTTTGAACATGTGCACGGCGAATCCCGCGACCGCGGCCAGGCGATGGTGGACCTGCTGGCGCAGTACGAGCAGCACGGCTTGCAGTTAAACAGCCGC > CP009273/1280786‑1280918 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |