| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 1723413 = | 244 (0.630) | 10 (0.030) | 5/94 | NT | 5.3% | coding (70/4617 nt) | lhr | putative ATP‑dependent helicase |
| ? | CP009273 | 1723475 = | 154 (0.480) | coding (132/4617 nt) | lhr | putative ATP‑dependent helicase | |||||
Only 100 of 285 total aligned reads displayed.
GGTTTCTTCGCGCCTTTAAACAGCCGACCGCTGTCCAGCCGCAAACCTGGCATGTGGCGGCGCGAAGCGAACATGCGCTGGTGATTGCACCGACCGGCTCCGGGAAAACGCTGGCAGCATTTCTCTACGCCCTC > CP009273/1723408‑1723541 | ttcgCTTCGCGCCTTTAAACAGCCGACCGCTGTCCAGCCGCAAACCTGGCATGTGGCGGCgcgaagcg < 1:10267477‑M1/64‑1 (MQ=255) ttcgCTTCGCGCCTTTAAACAGCCGACCGCTGTCCAGCCGCAAACCTGGCATGTGGCGGCgcgaagcg < 1:11814427‑M1/64‑1 (MQ=255) ttcgCTTCGCGCCTTTAAACAGCCGACCGCTGTCCAGCCGCAAACCTGGCATGTGGCGGCgcgaagcg < 1:490682‑M1/64‑1 (MQ=255) tttCTTCGCGCCTTTAAACAGCCGACCGCTGTCCAGCCGCAAACCTGGCATGTGGCGGCgcgaagcga > 1:17350999/1‑68 (MQ=255) ttcttcGCGCCTTTAAACAGCCGACCGCTGTCCAGCCGCAAACCTGGCATGTGGCGGCgcgaagcgaa < 1:6018762/68‑1 (MQ=255) ttcttcGCGCCTTTAAACAGCCGACCGCTGTCCAGCCGCAAACCTGGCATGTGGCGGCgcgaagcgaa < 1:5574022/68‑1 (MQ=255) ttcttcGCGCCTTTAAACAGCCGACCGCTGTCCAGCCGCAAACCTGGCATGTGGCGGCgcgaagcgaa < 1:27312944/68‑1 (MQ=255) ttcttcGCGCCTTTAAACAGCCGACCGCTGTCCAGCCGCAAACCTGGCATGTGGCGGCgcgaagcgaa < 1:22201474/68‑1 (MQ=255) TTCGCGCCTTTAAACAGCCGACCGCTGTCCAGCCGCAAACCTGGCATGTGGCGGCGCGAAGCGAACAt > 1:9830903‑M1/1‑68 (MQ=255) TTCGCGCCTTTAAACAGCCGACCGCTGTCCAGCCGCAAACCTGGCATGTGGCGGCGCGAAGCGAACAt > 1:28255566‑M1/1‑68 (MQ=255) TCGCGCCTTTAAACAGCCGACCGCTGTCCAGCCGCAAACCTGGCATGTGGCGGCGCGAAGCGAACAt < 1:21734669‑M1/67‑1 (MQ=255) TCGCGCCTTTAAACAGCCGACCGCTGTCCAGCCGCAAACCTGGCATGTGGCGGCGCGAAGCGAACATg > 1:17918105‑M1/1‑68 (MQ=255) cgcgccgccacatgccaggtttgcggctggccagcgggcggctgtttaaaggcgcgaagCGAACATgc < 1:9059241‑M2/9‑1 (MQ=255) CGCGCCTTTAAACAGCCGACCGCTGTCCAGCCGCAAACCTGGCATGTGGCGGCGCGAAGCGAACATgc < 1:16488061‑M1/68‑1 (MQ=255) CGCGCCTTTAAACAGCCGACCGCTGTCCAGCCGCAAACCTGGCATGTGGCGGCGCGAAGCGAACATgc > 1:995103‑M1/1‑68 (MQ=255) CGCGCCTTTAAACAGCCGACCGCTGTCCAGCCGCAAACCTGGCATGTGGCGGCGCGAAGCGAACATgc > 1:19691034‑M1/1‑68 (MQ=255) CGCGCCTTTAAACAGCCGACCGCTGTCCAGCCGCAAACCTGGCATGTGGCGGCGCGAAGCGAACATgc > 1:24628990‑M1/1‑68 (MQ=255) CGCGCCTTTAAACAGCCGACCGCTGTCCAGCCGCAAACCTGGCATGTGGCGGCGCGAAGCGAACATgc > 1:30129854‑M1/1‑68 (MQ=255) CGCGCCTTTAAACAGCCGACCGCTGTCCAGCCGCAAACCTGGCATGTGGCGGCGCGAAGCGAACATgc > 1:31376337‑M1/1‑68 (MQ=255) CGCGCCTTTAAACAGCCGACCGCTGTCCAGCCGCAAACCTGGCATGTGGCGGCGCGAAGCGAACATgc > 1:3337032‑M1/1‑68 (MQ=255) CGCGCCTTTAAACAGCCGACCGCTGTCCAGCCGCAAACCTGGCATGTGGCGGCGCGAAGCGAACATgc > 1:9257210‑M1/1‑68 (MQ=255) GCCTTTAAACAGCCGACCGCTGTCCAGCCGCAAACCTGGCATGTGGCGGCGCGAAGCGAACATgcgc > 1:16564730‑M1/1‑67 (MQ=255) GCCTTTAAACAGCCGACCGCTGTCCAGCCGCAAACCTGGCATGTGGCGGCGCGAAGCGAACATgcgc > 1:10518189‑M1/1‑67 (MQ=255) GCCTTTAAACAGCCGACCGCTGTCCAGCCGCAAACCTGGCATGTGGCGGCGCGAAGCGAACATgcgc > 1:27024160‑M1/1‑67 (MQ=255) GCCTTTAAACAGCCGACCGCTGTCCAGCCGCAAACCTGGCATGTGGCGGCGCGAAGCGAACATGCGCt > 1:22612391‑M1/1‑68 (MQ=255) GCCTTTAAACAGCCGACCGCTGTCCAGCCGCAAACCTGGCATGTGGCGGCGCGAAGCGAACATGCGCt > 1:20038444‑M1/1‑68 (MQ=255) GCCTTTAAACAGCCGACCGCTGTCCAGCCGCAAACCTGGCATGTGGCGGCGCGAAGCGAACATGCGCt > 1:19240395‑M1/1‑68 (MQ=255) CCTTTAAACAGCCGACCGCTGTCCAGCCGCAAACCTGGCATGTGGCGGCGCGAAGCGAACATGCGCTg < 1:6746734‑M1/68‑1 (MQ=255) cgccacatcccaggtttgcgcctggacagcggtcggctgtttaaaggcgcgaagCGAACATGCGCTgg < 1:23863405‑M2/14‑1 (MQ=255) CTTTAAACAGCCGACCGCTGTCCAGCCGCAAACCTGGCATGTGGCGGCGCGAAGCGAACATGCGCTgg > 1:24869351‑M1/1‑68 (MQ=255) ttAAACAGCCGACCGCTGTCCAGCCGCACACCTGGCATGTGGCGGCGCGAAGCGAACATGCGCTGGTg < 1:5188716/68‑1 (MQ=255) ttAAACAGCCGACCGCTGTCCAGCCGCAAACCTGGCATGTGGCGGCGCGAAGCGAACATGCGCTtgtg < 1:1721779/68‑1 (MQ=255) ttAAACAGCCGACCGCTGTCCAGCCGCAAACCTGGCATGTGGCGGCGCGAAGCGAACATGCGCTGGTg < 1:10903558/68‑1 (MQ=255) ttAAACAGCCGACCGCTGTCCAGCCGCAAACCTGGCATGTGGCGGCGCGAAGCGAACATGCGCTGGTg < 1:25181194/68‑1 (MQ=255) ttAAACAGCCGACCGCTGTCCAGCCGCAAACCTGGCATGTGGCGGCGCGAAGCGAACATGCGCTGGTg < 1:4945183/68‑1 (MQ=255) ttAAACAGCCGACCGCTGTCCAGCCGCAAACCTGGCATGTGGCGGCGCGAAGCGAACATGCGCTGGTg < 1:3806716/68‑1 (MQ=255) ttAAACAGCCGACCGCTGTCCAGCCGCAAACCTGGCATGTGGCGGCGCGAAGCGAACATGCGCTGGTg < 1:12814230/68‑1 (MQ=255) ttAAACAGCCGACCGCTGTCCAGCCGCAAACCTGGCATGTGGCGGCGCGAAGCGAACATGCGCTGGTg < 1:18231868/68‑1 (MQ=255) ttAAACAGCCGACCGCTGTCCAGCCGCAAACCTGGCATGTGGCGGCGCGAAGCGAACATGCGCTGGTg < 1:394546/68‑1 (MQ=255) aaaCAGCCGACCGCTGTCCAGCCGCAAACCTGGCATGTGGCGGCGCGAAGCGAACATGCGCTGGTGAt > 1:4032743/1‑68 (MQ=255) aCAGCCGACCGCTGTCCAGCCGCAAACCTGGCATGTGGCGGCGCGACGCGAACATGCGCTGGTGAtt > 1:6450439/1‑67 (MQ=255) aCAGCCGACCGCTGTCCAGCCGCAAACCTGGCATGTGGCGGCGCGAAGCGAACATGCGCTGGTGAtt > 1:4202108/1‑67 (MQ=255) aCAGCCGACCGCTGTCCAGCCGCAAACCTGGCATGTGGCGGCGCGAAGCGAACATGCGCTGGTGAtt > 1:29788372/1‑67 (MQ=255) aCAGCCGACCGCTGTCCAGCCGCAAACCTGGCATGTGGCGGCGCGAAGCGAACATGCGCTGGTGAtt > 1:26092412/1‑67 (MQ=255) aCAGCCGACCGCTGTCCAGCCGCAAACCTGGCATGTGGCGGCGCGAAGCGAACATGCGCTGGTGAtt > 1:27585311/1‑67 (MQ=255) aCAGCCGACCGCTGTCCAGCCGCAAACCTGGCATGTGGCGGCGCGAAGCGAACATGCGCTGGTGAtt > 1:23112671/1‑67 (MQ=255) aCAGCCGACCGCTGTCCAGCCGCAAACCTGGCATGTGGCGGCGCGAAGCGAACATGCGCTGGTGAtt > 1:22928923/1‑67 (MQ=255) aCAGCCGACCGCTGTCCAGCCGCAAACCTGGCATGTGGCGGCGCGAAGCGAACATGCGCTGGTGAtt > 1:11232157/1‑67 (MQ=255) aCAGCCGACCGCTGTCCAGCCGCAAACCTGGCATGTGGCGGCGCGAAGCGAACATGCGCTGGTGAtt > 1:6848645/1‑67 (MQ=255) aCAGCCGACCGCTGTCCAGCCGCAAACCTGGCATGTGGCGGCGCGAAGCGAACATGCGCTGGTGAtt > 1:8408888/1‑67 (MQ=255) aCAGCCGACCGCTGTCCAGCCGCAAACCTGGCATGTGGCGGCGCGAAGCGAACATGCGCTGGTGAtt > 1:1418662/1‑67 (MQ=255) aCAGCCGACCGCTGTCCAGCCGC‑AACCTGGCATGTGGCGGCGCGAAGCGAACATGCGCTGGTGATTGc < 1:1761063/68‑1 (MQ=255) aGCCGACCGCTGTCCAGCCGCAAACCTGGCATGTGGCGGCGCGAAGCGAACATGCGCTGGTGATTGc > 1:1499484/1‑67 (MQ=255) gCCGACCGCTGTCCAGCCGCAAACCTGGCATGTGGCGGCGCGAAGCGAACATGCGCTGGTGATTGCa > 1:28764805/1‑67 (MQ=255) gACCGCTGTCCAGCCGCAAACCTGGCATGTGGCGGCGCGAAGCGAACATGCGCTGGTGATTGCaccga < 1:13941221/68‑1 (MQ=255) aCCGCTGTCCAGCCGCAAACCTGGCATGTGGCGGCGCGAAGCGAACATGCGCTGGTGATTGCaccga > 1:24106805/1‑67 (MQ=255) gCTGTCCAGCCGCAAACCTGGCATGTGGCGGCGCGAAGCGAACATGCGCTGGTGATTGCaccgaccg > 1:31993194/1‑67 (MQ=255) gCTGTCCAGCCGCAAACCTGGCATGTGGCGGCGCGAAGCGAACATGCGCTGGTGATTGCaccgaccg > 1:4639145/1‑67 (MQ=255) tGTCCAGCCGCAAACCTGGCATGTGGCGGCGCGAAGCGAACATGCGCTGGTGATTGCACCGACCGGc < 1:19910928/67‑1 (MQ=255) tGTCCAGCCGCAAACCTGGCATGTGGCGGCGCGAAGCGAACATGCGCTGGTGATTGCACCGACCGGc < 1:28448017/67‑1 (MQ=255) gCCGCAAACCTGGCATGTGGCGGCGCGAAGCGAACATGCGCTGGTGATTGCACCGACCGGCTCCGGGa > 1:1345357/1‑68 (MQ=255) gCCGCAAACCTGGCATGTGGCGGCGCGAAGCGAACATGCGCTGGTGATTGCACCGACCGGCTCCGGGa > 1:30397660/1‑68 (MQ=255) cGCAAACCTGGCATGTGGCGGCGCGAAGCGAACATGCGCTGGTGATTGCACCGCCCGGCTCCGGGaaa > 1:629611/1‑68 (MQ=255) cGCAAACCTGGCATGTGGCGGCGCGAAGCGAACATGCGCTGGTGATTGCACCGACCGGCTCCggg < 1:31157713/65‑1 (MQ=255) cGCAAACCTGGCATGTGGCGGCGCGAAGCGAACATGCGCTGGTGATTGCACCGACCGGCTCCGGGaaa > 1:12335116/1‑68 (MQ=255) aCCTGGCATGTGGCGGCGCGAAGCGAACATGCGCTGGTGATTGCACCGACCGGCTCCGGGAAAAc > 1:9082866/1‑65 (MQ=255) aCCTGGCATGTGGCGGCGCGAAGCGAACATGCGCTGGTGATTGCACCGACCGGCTCCGGGAAAACGCt < 1:2594473/68‑1 (MQ=255) ccTGGCATGTGGCGGCGCGAAGCGAACATGCGCTGGTGATTGCACCGACCGGCTCCGGGAAAACGCTg > 1:10734308/1‑68 (MQ=255) cATGTGGCGGCGCGAAGCGAACATGCGCTGGTGATTGCACCGACCGGCTCCGGGAAAACGCTGgcagc > 1:2822723/1‑68 (MQ=255) cATGTGGCGGCGCGAAGCGAACATGCGCTGGTGATTGCACCGACCGGCTCCGGGAAAACGCTGgcagc > 1:7487163/1‑68 (MQ=255) cATGTGGCGGCGCGAAGCGAACATGCGCTGGTGATTGCACCGACCGGCTCCGGGAAAACGCTGgcagc > 1:1858078/1‑68 (MQ=255) aTGTGGCGGCGCGAAGCGATCATGCGCTGGTGATTGCACCGACCGGCTCCGGGAAAACGCTGgcagc < 1:5402784/67‑1 (MQ=255) aTGTGGCGGCGCGAAGCGAACATGCGCTGGTGATTGCACCGACCGGCTCCGGGAAAACGCTGgcagca < 1:19062260/68‑1 (MQ=255) aTGTGGCGGCGCGAAGCGAACATGCGCTGGTGATTGCACCGACCGGCTCCGGGAAAACGCTGgcagca > 1:30612962/1‑68 (MQ=255) aTGTGGCGGCGCGAAGCGAACATGCGCTGGTGATTGCACCGACCGGCTCCGGGAAAACGCTGgcagc < 1:16790230/67‑1 (MQ=255) aTGTGGCGGCGCGAAGCGAACATGCGCTGGTGATTGCACCGACCGGCTCCGGGAAAACGCTGgcagc < 1:27782162/67‑1 (MQ=255) aTGTGGCGGCGCGAAGCGAACATGCGCTGGTGATTGCACCGACCGGCTCCGGGAAAACGCTGgcagc < 1:20815980/67‑1 (MQ=255) aTGTGGCGGCGCGAAGCGAACATGCGCTGGTGATTGCACCGACCGGCTCCGGGAAAACGCTGgcagc < 1:26525211/67‑1 (MQ=255) aTGTGGCGGCGCGAAGCGAACATGCGCTGGTGATTGCACCGACCGGCTCCGGGAAAACGCTGgcagc < 1:26274687/67‑1 (MQ=255) tgtgGCGGCGCGACGCGAACATGCGCTGGTGATTGCCCCGCCCGGCTCCGGGAAAACGCTGGCAGCAt > 1:12070353/1‑68 (MQ=255) tgtgGCGGCGCGAAGCGAACATGCGCTGGTGATTGCACCGACCGGCTCCGGGAAAACGCTGGCAGCAt > 1:22445028/1‑68 (MQ=255) tgtgGCGGCGCGAAGCGAACATGCGCTGGTGATTGCACCGACCGGCTCCGGGAAAACGCTGGCAGCAt > 1:101937/1‑68 (MQ=255) tgtgGCGGCGCGAAGCGAACATGCGCTGGTGATTGCACCGACCGGCTCCGGGAAAACGCTGGCAGCAt > 1:20153837/1‑68 (MQ=255) tgtgGCGGCGCGAAGCGAACATGCGCTGGTGATTGCACCGACCGGCTCCGGGAAAACGCTGGCAGCAt > 1:29509956/1‑68 (MQ=255) gtgGCGGCGCGAAGCGAACATGCGCTGGTGATTGCACCGACCGGCTCCGGGAAAACGCTGGCAGCAtt < 1:7214352/68‑1 (MQ=255) ggcggcGCGAAGCGAACATGCGCTGGTGATTGCACCGACCGGCTCCGGGAAAACGCTGGCAGCAtt > 1:11876925/1‑66 (MQ=255) ggcggcGCGAAGCGAACATGCGCTGGTGATTGCACCGACCGGCTCCGGGAAAACGCTGGCAGCATTtc < 1:115730/68‑1 (MQ=255) ggcggcGCGAAGCGAACATGCGCTGGTGATTGCACCGACCGGCTCCGGGAAAACGCTGGCAGCATTtc < 1:12144680/68‑1 (MQ=255) ggcggcGCGAAGCGAACATGCGCTGGTGATTGCACCGACCGGCTCCGGGAAAACGCTGGCAGCATTtc < 1:13573151/68‑1 (MQ=255) gcggcgCGAAGCGAACATGCGCTGGTGATTGCACCGACCGGCTCCGGGAAAACGCTGGCAGCATTtc > 1:20581924/1‑67 (MQ=255) gcggcgCGAAGCGAACATGCGCTGGTGATTGCACCGACCGGCTCCGGGAAAACGCTGGCAGCATTtc > 1:7975603/1‑67 (MQ=255) gcggcgCGAAGCGAACATGCGCTGGTGATTGCACCGACCGGCTCCGGGAAAACGCTGGCAGCATTtc < 1:31604709/67‑1 (MQ=255) ggcgcgaagCGAACATGCGCTGGTGATTGCACCGACCGGCTCCGGGAAAACGCTGGCAGCATTtctc < 1:16337537‑M2/58‑1 (MQ=255) ggcgcgaagCGAACATGCGCTGGTGATTGCACCGACCGGCTCCGGGAAAACGCTGGCAGCATTtctc < 1:29401328‑M2/58‑1 (MQ=255) gaagCGAACATGCGCTGGTGATTGCACCGACCGGCTCCGGGAAAACGCTGGTAGCATTTCTCTACGcc < 1:22158244‑M2/64‑1 (MQ=255) gaagCGAACATGCGCTGGTGATTGCACCGACCGGCTCCGGGAAAACGCTGGCAGCATTTCTCTACGcc < 1:21178140‑M2/64‑1 (MQ=255) gaagCGAACATGCGCTGGTGATTGCACCGACCGGCTCCGGGAAAACGCTGGCAGCATTTCTCTACGcc < 1:2446690‑M2/64‑1 (MQ=255) agCGAACATGCGCTGGTGATTGCACCGACCGGCTCCGGGAAAACGCTGGCAGCATTTCTCTACGccc > 1:13380761‑M2/3‑67 (MQ=255) agCGAAAATGCGCTGGTGATTGCACCGACCGGCTCCGGGAAAACGCTGGCAGCATTTCTCTACGCCCt < 1:8547491‑M2/66‑1 (MQ=255) gCGAACATGCGCTGGTGATTGCACCGACCGGCTCCGGGAAAACGCTGGCAGCATTTCTCTACGCCCTc > 1:15411668‑M2/2‑68 (MQ=255) | GGTTTCTTCGCGCCTTTAAACAGCCGACCGCTGTCCAGCCGCAAACCTGGCATGTGGCGGCGCGAAGCGAACATGCGCTGGTGATTGCACCGACCGGCTCCGGGAAAACGCTGGCAGCATTTCTCTACGCCCTC > CP009273/1723408‑1723541 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |