| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 2279605 = | 377 (0.980) | 15 (0.050) | 7/86 | NT | 5.9% | coding (1751/1761 nt) | yejM | essential inner membrane DUF3413 domain‑containing protein; lipid A production and membrane permeability factor |
| ? | CP009273 | 2279638 = | 193 (0.650) | intergenic (+23/‑52) | yejM/proL | essential inner membrane DUF3413 domain‑containing protein; lipid A production and membrane permeability factor/tRNA‑Pro | |||||
Only 100 of 501 total aligned reads displayed.
TATTGCAAGTGCTGACAGACGAGAAGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGCACGTAGCGCAGC > CP009273/2279572‑2279705 | tATTGCATGTGCTGACTGACGAGAAGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGaa < 1:31891828/67‑1 (MQ=255)tATTGCAAGTGCTGACAGACGAGAAGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGaaa < 1:17463846/68‑1 (MQ=255) aTTGCAAGTGCTGACAGACGAGAAGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAat < 1:28796606/68‑1 (MQ=255) ttGCAAGTGCTGACAGACGAGAAGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAata < 1:5947230/68‑1 (MQ=255) ttGCAAGTGCTGACAGACGAGAAGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAata < 1:18819765/68‑1 (MQ=255) tGCAAGTGCTGACAGACGAGAAGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAtata > 1:16029630/1‑67 (MQ=255) tGCAAGTGCTGACAGACGAGAAGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAatat < 1:8763908/68‑1 (MQ=255) tGCAAGTGCTGACAGACGAGAAGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAatat < 1:10226771/68‑1 (MQ=255) tGCAAGTGCTGACAGACGAGAAGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAatat < 1:29405419/68‑1 (MQ=255) tGCAAGTGCTGACAGACGAGAAGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAatat < 1:4191177/68‑1 (MQ=255) tGCAAGTGCTGACAGACGAGAAGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAatat < 1:26206940/68‑1 (MQ=255) gCAAGTGCTGACAGACGAGAAGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATc < 1:13686921/68‑1 (MQ=255) gCAAGTGCTGACAGACGAGAAGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATc < 1:24911428/68‑1 (MQ=255) tttccacaccgattgcaagtaagatattTAGCTAACTGATTAATTATAAATCAGTTAGCGaaatatgt < 1:2506376‑M1/40‑3 (MQ=255) cAAGTGCTGACAGACGAGAAGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCt > 1:5090308/1‑68 (MQ=255) aGTGCTGACAGACGAGAAGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTa < 1:21505302/68‑1 (MQ=255) gTGCTGACAGACGAGAAGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCtt > 1:3723792/1‑66 (MQ=255) gCTGACAGACGAGAAGCGTTTTATCGCTAACTTATTAATTATAAATCAGTTAGCGAAATATCTTAc < 1:26459013/66‑1 (MQ=255) gCTGACAGACGAGAAGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTAc < 1:6396434/66‑1 (MQ=255) gCTGACAGACGAGAAGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACtt > 1:5304002/1‑68 (MQ=255) gCTGACAGACGAGAAGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACtt > 1:27956837/1‑68 (MQ=255) tGACAGACGAGAAGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTg < 1:23930714/67‑1 (MQ=255) tGACAGACGAGAAGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTg < 1:13958198/67‑1 (MQ=255) accgattgcaagtaagatattTCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGc < 1:12119738‑M1/47‑1 (MQ=255) gACAGACGAGAAGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCa < 1:16217291/68‑1 (MQ=255) gACAGACGAGAAGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCa < 1:4831612/68‑1 (MQ=255) cAGACGAGAAGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCaa > 1:23186785/1‑67 (MQ=255) ttgcaagtaagatatttcgctaactgatttataattaatcagttagcgaAATATCTTACTTGCAATCg < 1:15277108‑M2/19‑1 (MQ=255) gcaagtaagatatttcgctaactgatttataattaatcagttagcgaAATATCTTACTTGCAATCGgt < 1:3882893‑M2/21‑1 (MQ=255) cGAGAAGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATc < 1:30666475/65‑1 (MQ=255) cGAGAAGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCgg < 1:30559233/67‑1 (MQ=255) cGAGAAGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGgt < 1:22652015/68‑1 (MQ=255) cGAGAAGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGgt < 1:15083130/68‑1 (MQ=255) cGAGAAGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGgt < 1:23521843/68‑1 (MQ=255) cGAGAAGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGgt < 1:11074559/68‑1 (MQ=255) cGAGAAGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGgt < 1:25304074/68‑1 (MQ=255) gagaAGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGgtg > 1:9746295/1‑68 (MQ=255) gaAGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGgtgt < 1:12317480/67‑1 (MQ=255) gaAGCCTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGGtgtg > 1:13208732/1‑68 (MQ=255) aGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTgg < 1:566408/67‑1 (MQ=255) aGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGa > 1:12996350/1‑68 (MQ=255) aGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGa < 1:20052244/68‑1 (MQ=255) aGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGa < 1:25804644/68‑1 (MQ=255) tttATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAAc < 1:2373557/67‑1 (MQ=255) tttATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAAc < 1:3395884/67‑1 (MQ=255) tttATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAAc < 1:16535727/67‑1 (MQ=255) tttATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACg > 1:20433984/1‑68 (MQ=255) tttATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACg < 1:16933968/68‑1 (MQ=255) taattcgctaactgatttataattaatcagttagcgaAATATCTTACTTGCAATCGGTGTGGAAAACg < 1:6508879‑M2/31‑1 (MQ=255) aTCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGgta > 1:21814053/1‑68 (MQ=255) aTCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGgta < 1:32029620/68‑1 (MQ=255) aTCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGgta < 1:1817461/68‑1 (MQ=255) tcgcaaactcattaaaaattaatcacttagcgaAATATCTTACTTGCAATCGGTGTGGAAAACGgtag < 1:18555600‑M2/35‑1 (MQ=255) tCGCAACCTGATTTAAAATAAACCCGTTAGCCAAATATCTTACTTGCAATCGGTGTGGAAAACGgtag < 1:24308213/68‑1 (MQ=255) TCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGgtag > 1:20972825‑M1/1‑68 (MQ=255) TCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGgtag > 1:15855075‑M1/1‑68 (MQ=255) TCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGgtag > 1:7002877‑M1/1‑68 (MQ=255) TCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGgtag > 1:7862644‑M1/1‑68 (MQ=255) CGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGgtagt > 1:16842878‑M1/1‑68 (MQ=255) CGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGgtagt > 1:14453079‑M1/1‑68 (MQ=255) GCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGgtagta > 1:4634429‑M1/1‑68 (MQ=255) TAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTAtt < 1:20518839‑M1/68‑1 (MQ=255) TAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTAt > 1:8570724‑M1/1‑67 (MQ=255) ACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTa < 1:19690301‑M1/67‑1 (MQ=255) ACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTa < 1:25945712‑M1/67‑1 (MQ=255) attaTAAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACg > 1:19989703/1‑68 (MQ=255) tataAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTag > 1:2698812/1‑58 (MQ=255) tataAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAg > 1:2667916/1‑68 (MQ=255) tataAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAg < 1:600341/68‑1 (MQ=255) tataAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAg < 1:821037/68‑1 (MQ=255) atcagttagcgaAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGc < 1:24711515‑M2/56‑1 (MQ=255) atcagttagcgaAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGc < 1:23020124‑M2/56‑1 (MQ=255) atcagttagcgaAATATCTTACTTGCAATCGGTGTGGAAAACGGAAGTATAAGCAGCCACGAGTCGGc > 1:24064159‑M2/13‑68 (MQ=255) tcagttagcgaAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGc > 1:11333417‑M2/12‑67 (MQ=255) tcagttagcgaAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGc > 1:31396751‑M2/12‑67 (MQ=255) tcagttagcgaAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGc > 1:27449578‑M2/12‑67 (MQ=255) tcagttagcgaAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGc > 1:17690574‑M2/12‑67 (MQ=255) cagttagcgaAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGCAc < 1:31722192‑M2/58‑1 (MQ=255) cagttagcgaAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGCAc < 1:14829623‑M2/58‑1 (MQ=255) cagttagcgaAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGCAc < 1:730796‑M2/58‑1 (MQ=255) cagttagcgaAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGCAc < 1:22101068‑M2/58‑1 (MQ=255) agttagcgaAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGCACg > 1:14911242‑M2/10‑68 (MQ=255) agttagcgaAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGCACg > 1:17007034‑M2/10‑68 (MQ=255) agttagcgaAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGCACg > 1:19169416‑M2/10‑68 (MQ=255) tagcgaAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGCACGTa < 1:10341021‑M2/61‑1 (MQ=255) agcgaAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGCACGTAgc < 1:30026077‑M2/63‑1 (MQ=255) gaAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGCACGTAGCGCa < 1:25564795‑M2/66‑1 (MQ=255) gaAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGCACGTAGCGCa < 1:27568654‑M2/66‑1 (MQ=255) gaAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGCACGTAGCGCa < 1:28439301‑M2/66‑1 (MQ=255) gaAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGCACGTAGCGCa < 1:12660522‑M2/66‑1 (MQ=255) gaAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGCACGTAGCGCa < 1:8304505‑M2/66‑1 (MQ=255) gaAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGCACGTAGCGCa < 1:30873418‑M2/66‑1 (MQ=255) aaTATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGCACGTAGCGCAGc < 1:22394873/68‑1 (MQ=255) aaTATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGCACGTAGCGCAGc < 1:19357030/68‑1 (MQ=255) aaTATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGCACGTAGCGCAGc < 1:27220660/68‑1 (MQ=255) aaTATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGCACGTAGCGCAGc < 1:11556116/68‑1 (MQ=255) aaTATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGCACGTAGCGCAGc < 1:9156218/68‑1 (MQ=255) aaTATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGCACGTAGCGCAGc < 1:9482855/68‑1 (MQ=255) aaTATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGCACGTAGCGCAGc < 1:30346381/68‑1 (MQ=255) aaTATCTTACTTGCAAGCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGCACGTAGCGCAGc < 1:2448174/68‑1 (MQ=255) | TATTGCAAGTGCTGACAGACGAGAAGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGCACGTAGCGCAGC > CP009273/2279572‑2279705 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |