New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 3615265	NA (NA)	5 (0.010)	3/100	NT	100%	coding (2714/4236 nt)	rhsB	Rhs family putative polymorphic toxin, putative neighboring cell growth inhibitor
	?	CP009273	= 3615283	0 (0.000)					coding (2732/4236 nt)	rhsB	Rhs family putative polymorphic toxin, putative neighboring cell growth inhibitor

AGCGAATCTGGATATCCGCATCCCGTATGCCACAGACCCGGCAGGTAACCGCCTGCCCGACCCGGAGCTGCACCCGGACAGCACCCTCAGCATGTGGCCGGATAACCGTATCGCCCGT  >  CP009273/3615227‑3615344                                                         |                                                              aGCGAATCTGGATATCCGCATCCCGTATGCCACAGACCCGGCAGGTAACCGCCTGCCgggtctgtgg                                                     >  1:27721933‑M2/1‑57 (MQ=255)                             gCCACAGACCCGGCAGGTAACCGCCTGCCgggtctgtggcatacgggttgcggatatccagattc                           <  1:7223219‑M2/65‑37 (MQ=255)                             gCCACAGACCCGGCAGGTAACCGCCTGCCgggtctgtggcatacgggatgcggatatccagattc                           <  1:10917064‑M2/65‑37 (MQ=255)                             gCCACAGACCCGGCAGGTAACCGCCTGCCgggtctgtggcatacgggatgcggatatccagattc                           <  1:22498979‑M2/65‑37 (MQ=255)                                          cAGGTAACCGCCTGCCgggtctgtggcatacgggatgcggatatcgagattcgctgcggtggtgtga            <  1:21669377‑M2/67‑52 (MQ=255)                                                   gCCTGCCgggtctgtggcatacgggatgcggatatccagattcgctgcggtggtgtgaacgccggtca  <  1:18609785‑M2/68‑62 (MQ=255)                                                   gCCTGCCgggtctgtggcatacgggatgcggatatccagattcgctgcggtggtgtgaacgccggtca  <  1:18646500‑M2/68‑62 (MQ=255)                                                         |                                                              AGCGAATCTGGATATCCGCATCCCGTATGCCACAGACCCGGCAGGTAACCGCCTGCCCGACCCGGAGCTGCACCCGGACAGCACCCTCAGCATGTGGCCGGATAACCGTATCGCCCGT  >  CP009273/3615227‑3615344

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.