New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 3999175 =406 (1.050)26 (0.080) 11/96 NT 7.2% intergenic (+84/‑49) pldA/recQ outer membrane phospholipase A/ATP‑dependent DNA helicase
?CP009273 3999197 = 318 (0.960)intergenic (+106/‑27) pldA/recQ outer membrane phospholipase A/ATP‑dependent DNA helicase

Only 100 of 512 total aligned reads displayed.

CCAGGATTACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTGTTGAATCTGGAGTCCGGAGCTAA  >  CP009273/3999130‑3999264
                                                                   |                                                                   
ccAGGATTACCCTCTCAGAGACTATAAGCATTGCAGTTTCTGGCGCAGGCGCTGAAAATAGCGCCTGt                                                                     <  1:9170086/68‑1 (MQ=255)
ccAGGATTACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGt                                                                     <  1:10005024/68‑1 (MQ=255)
ccAGGATTACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGt                                                                     <  1:6610513/68‑1 (MQ=255)
ccAGGATTACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGt                                                                     <  1:29509965/68‑1 (MQ=255)
cacttccgcctgcgccacattcaccccgattgcctgaaataaaaacaggcgctattttcagcgcctgt                                                                     <  1:16837354‑M2/1‑1 (MQ=255)
 cAGGATTACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGtt                                                                    <  1:18821260/68‑1 (MQ=255)
 cAGGATTACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGtt                                                                    <  1:19610470/68‑1 (MQ=255)
   ggATTACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGtttt                                                                  >  1:23597570/1‑68 (MQ=255)
     aTTACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTa                                                                >  1:19120791/1‑68 (MQ=255)
     aTTACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTa                                                                >  1:32108762/1‑68 (MQ=255)
     aTTACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTa                                                                >  1:4608970/1‑68 (MQ=255)
     aTTACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTa                                                                >  1:30688027/1‑68 (MQ=255)
     aTTACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTa                                                                >  1:7589924/1‑68 (MQ=255)
     aTTACCCTCTCAGAGACTAAAAGCATTGCAGTTTATCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTa                                                                >  1:15915234/1‑68 (MQ=255)
      ttACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTa                                                                <  1:8792609/67‑1 (MQ=255)
      ttACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTAt                                                               <  1:21291226/68‑1 (MQ=255)
      ttACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTAt                                                               <  1:7067244/68‑1 (MQ=255)
      ttACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTAt                                                               <  1:9315194/68‑1 (MQ=255)
      gcctgcgccacattcaccccgattgcctgaaataaaaaacaggcgctattttcagcgcctgtttttta                                                               <  1:6888202‑M2/7‑3 (MQ=255)
          ccTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCa                                                           >  1:28776215/1‑68 (MQ=255)
          ccTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCa                                                           >  1:18553992/1‑68 (MQ=255)
          ccTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCa                                                           >  1:10440260/1‑68 (MQ=255)
          ccTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCa                                                           >  1:2823352/1‑68 (MQ=255)
          ccTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCa                                                           >  1:20856296/1‑68 (MQ=255)
          ccTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCa                                                           >  1:12436998/1‑68 (MQ=255)
              tcAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCTCTGAAAAAAGCGCCTGTTATTATATCAGGCa                                                       >  1:29074440/1‑68 (MQ=255)
              tcAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCa                                                       <  1:4061278/68‑1 (MQ=255)
              tcAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCa                                                       <  1:22182712/68‑1 (MQ=255)
                agagACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCaa                                                      >  1:20714818/1‑67 (MQ=255)
                agagACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCaa                                                      >  1:2686793/1‑67 (MQ=255)
                agagACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCaa                                                      >  1:23032328/1‑67 (MQ=255)
                agagACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCaa                                                      >  1:5390547/1‑67 (MQ=255)
                agagACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCaa                                                      >  1:1489837/1‑67 (MQ=255)
                agagACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCaa                                                      >  1:14095981/1‑67 (MQ=255)
                acattcaccccgattgcctgaaataaaaacaggcgctattttcagcgcctgTTTTTATTTCAGGCAAt                                                     <  1:27111701‑M2/17‑1 (MQ=255)
                  attcaccccgcttgcctgaaataaaaaCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCg                                                   <  1:7211065‑M1/41‑1 (MQ=255)
                  agaCTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCg                                                   >  1:3422465/1‑68 (MQ=255)
                   ttcaccccgcttgcctgaaataaaaaCAGGCGCGGAAAATAGCGCCTGGTTTTATTTCAGGCAATCgg                                                  <  1:6842863‑M1/42‑1 (MQ=255)
                    tcaccccgattgcctgaaataaaaacaggcgctattttcagcgcctgTTTTTATTTCAGGCAATCggg                                                 <  1:11069099‑M2/21‑1 (MQ=255)
                    aCTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCggg                                                 >  1:27902938/1‑68 (MQ=255)
                    aCTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCggg                                                 >  1:8521702/1‑68 (MQ=255)
                    aCTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCggg                                                 >  1:9606120/1‑68 (MQ=255)
                    aCTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCggg                                                 >  1:13909845/1‑68 (MQ=255)
                     ccaaaaGCATTGCAGTTTCTCGCGCAGGCGCCGAAAATAGCGCCTGTTTTTATTTCAGGCAATCggg                                                 <  1:31392281/65‑1 (MQ=255)
                     cTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCgggg                                                <  1:27636066/68‑1 (MQ=255)
                     cTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCggg                                                 <  1:23392931/67‑1 (MQ=255)
                     cTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCggg                                                 <  1:4475639/67‑1 (MQ=255)
                     cTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCggg                                                 <  1:16649420/67‑1 (MQ=255)
                     cTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCggg                                                 <  1:17264617/67‑1 (MQ=255)
                     cTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCggg                                                 <  1:19377332/67‑1 (MQ=255)
                     cTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCgg                                                  <  1:17658631/66‑1 (MQ=255)
                        cccgattgcctgaaataaaaaCAGGCGCTGAAAATAGCGCCTGGTTTTATTTCAGGCAATCGGGGTGa                                             <  1:4338708‑M1/47‑1 (MQ=255)
                        aaaGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGa                                             >  1:15078384/1‑68 (MQ=255)
                         ccgattgcctgaaataaaaacaggcgctattttcagcgcctgTTTTTATTTCAGGCAATCGGGGTGaa                                            <  1:2592605‑M2/26‑1 (MQ=255)
                         aaGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGaa                                            <  1:31790245/68‑1 (MQ=255)
                         aaGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGaa                                            <  1:6299286/68‑1 (MQ=255)
                          aGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAAt                                           >  1:24991341/1‑68 (MQ=255)
                          aGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAAt                                           <  1:8296373/68‑1 (MQ=255)
                          aGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAAt                                           >  1:7380097/1‑68 (MQ=255)
                          aGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAAt                                           <  1:2851757/68‑1 (MQ=255)
                            attgcctgaaataaaaaCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAAtgt                                         <  1:11983191‑M1/51‑1 (MQ=255)
                              tgcctgaaataaaaaCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAAtgtg                                        <  1:28431822‑M1/52‑1 (MQ=255)
                               tGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGgc                                      <  1:27248043/68‑1 (MQ=255)
                                  aGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCa                                   >  1:26407986/1‑68 (MQ=255)
                                  aGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCa                                   >  1:5958484/1‑68 (MQ=255)
                                    tttCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAgg                                 <  1:25386734/68‑1 (MQ=255)
                                     ttCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAgg                                 <  1:15449473/67‑1 (MQ=255)
                                     ttCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGc                                >  1:3626472/1‑68 (MQ=255)
                                     ttCTCGCGCAGGCGCGGAATATAGCGCCTGTTTTTATTTCAGGCATTCGGGGTGAATGTGGCGCAg                                  <  1:24343392/66‑1 (MQ=255)
                                       ctcGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCgg                              >  1:21779228/1‑68 (MQ=255)
                                        tcGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGa                             >  1:225089/1‑68 (MQ=255)
                                          gcgcAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAg                           <  1:21500920/68‑1 (MQ=255)
                                            gcAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAgt                          <  1:18045726/67‑1 (MQ=255)
                                            gcAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAgt                          <  1:30349244/67‑1 (MQ=255)
                                            gcAGGCGCTGAAAATAGCGCCTGTATTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAgt                          <  1:256167/67‑1 (MQ=255)
                                              AGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAgtgt                        >  1:10887028‑M1/1‑67 (MQ=255)
                                              AGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAgtgt                        >  1:17005227‑M1/1‑67 (MQ=255)
                                                 CGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTGTTg                      >  1:15589469‑M1/1‑66 (MQ=255)
                                                  GCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTGTTGaa                    >  1:26053303‑M1/1‑67 (MQ=255)
                                                  GCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTGTTGaa                    >  1:7971518‑M1/1‑67 (MQ=255)
                                                  GCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTGTTGaa                    >  1:24666990‑M1/1‑67 (MQ=255)
                                                  GCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTGTTGaa                    >  1:13002525‑M1/1‑67 (MQ=255)
                                                  GCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTGTTGaa                    >  1:1341706‑M1/1‑67 (MQ=255)
                                                  GCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTGTTGaa                    >  1:23825296‑M1/1‑67 (MQ=255)
                                                  GCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTGTTGAAt                   >  1:12849516‑M1/1‑68 (MQ=255)
                                                    TGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTGTTGaa                    <  1:5014194‑M1/65‑1 (MQ=255)
                                                      aaaaTAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTGTTGAATCTgg               >  1:18317761/1‑68 (MQ=255)
                                                      aaaaTAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTGTTGAATCTgg               >  1:29974348/1‑68 (MQ=255)
                                                      aaaaTAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTGTTGAATCTgg               >  1:21911315/1‑68 (MQ=255)
                                                       aaaTAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTGTTGAATCTGGa              >  1:29775914/1‑68 (MQ=255)
                                                         aTAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTGTTGAATCTGGAg             >  1:29357438/1‑67 (MQ=255)
                                                         aTAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTGTTGAATCTGGAg             >  1:5534753/1‑67 (MQ=255)
                                                            gcgcctgTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTGTTGAATCTGGAGTCCg         >  1:20027116‑M2/8‑68 (MQ=255)
                                                              gcctgTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTGTTGAATCTGGAGTCCGGa       <  1:145465‑M2/63‑1 (MQ=255)
                                                              gcctgTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTGTTGAATCTGGAGTCCGGa       <  1:12233169‑M2/63‑1 (MQ=255)
                                                              gcctgTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTGTTGAATCTGGAGTCCGGa       <  1:12081368‑M2/63‑1 (MQ=255)
                                                              gcctgTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTGTTGAATCTGGAGTCCGGa       <  1:11362406‑M2/63‑1 (MQ=255)
                                                              gcctgTTTTTATTTCAGGCAATCGGGGGGAATGTGGCGCAGGCGGAAGTGTTGAATCTGGAGTCCGGa       <  1:9055772‑M2/63‑1 (MQ=255)
                                                                ctgTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTGTTGAATCTGGAGTCCGGAGc     <  1:24199461‑M2/65‑1 (MQ=255)
                                                                 tgTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTGTTGAATCTGGAGTCCGGAGCt    >  1:16203344‑M2/3‑68 (MQ=255)
                                                                   |                                                                   
CCAGGATTACCCTCTCAGAGACTAAAAGCATTGCAGTTTCTCGCGCAGGCGCTGAAAATAGCGCCTGTTTTTATTTCAGGCAATCGGGGTGAATGTGGCGCAGGCGGAAGTGTTGAATCTGGAGTCCGGAGCTAA  >  CP009273/3999130‑3999264

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.