| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 4072557 | 331 (0.700) | 30 (0.100) | 12/68 | NT | 7.5% | intergenic (+759/‑100) | yiiD/yiiE | putative acetyltransferase/CopG family putative transcriptional regulator |
| ? | CP009273 | 4072996 = | 542 (1.880) | intergenic (+127/‑115) | yiiE/yiiF | CopG family putative transcriptional regulator/putative thymol sensitivity protein, CopG family putative transcriptional regulator | |||||
Only 100 of 469 total aligned reads displayed.
TTCATCCTGGGCGATAACTAAACCATTTTTGAGTAATAAATGAAACAACTGCAACACTCTTATTATTTCTGGAAAACGCCTCGCAAAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/4072469‑4072557‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tctggaaaacgcctcgcaaaaaTAAAAAATGATGCGTAAATGAGCTTTCTTTAAAGATTCGGCAAGGGTACTTTTCTCTCCATAGATTC > CP009273/4072996‑4073062 TTCATCCTGGGCGATAACTAAAACATTTTTGAGTAATAAATGAAACAACTGCAACACGATTATTAGTT > 1:38383002/1‑68 CATCCTGGGCGATAACTAAACCATTTTTGAGTAATAAATGAAACAACTGCAACACTCTTATTATTTCT < 1:37769152/68‑1 CATCCTGGGCGATAACTAAACCATTTTTGAGTAATAAATGAAACAACTGCAACACTCTTATTATTTCT < 1:1516977/68‑1 TCCTGGGCGATAACTAAACCATTTTTGAGTAATAAATGAAACAACTGCAACACTCTTATTATTTCTGG > 1:25299568/1‑68 TCCTGGGCGATAACTAAACCATTTTTGAGTAATAAATGAAACAACTGCAACACTCTTATTATTTCTGG > 1:920571/1‑68 TCCTGGGCGATAACTAAACCATTTTTGAGTAATAAATGAAACAACTGCAACACTCTTATTATTTCTGG > 1:6188324/1‑68 TCCTGGGCGATAACTAAACCATTTTTGAGTAATAAATGAAACAACTGCAACACTCTTATTATTTCTGG > 1:12165641/1‑68 TCCTGGGCGATAACTAAACCATTTTTGAGTAATAAATGAAACAACTGCAACACTCTTATTATTTCTGG > 1:3228669/1‑68 TCCTGGGCGATAACTAAACCATTTTTGAGTAATAAATGAAACAACTGCAACACTCTTATTATTTCTGG > 1:36724071/1‑68 CCTGGGCGATAACTAAACCATTTTTGAGTAATAAATGAAACAACTGCAACACTCTTATTATTTCTGGA > 1:10021184/1‑68 CCTGGGCGATAACTAAACCATTTTTGAGTAATAAATGAAACAACTGCAACACTCTTATTATTTCTGGA > 1:27934700/1‑68 CCTGGGCGATAACTAAACCATTTTTGAGTAATAAATGAAACAACTGCAACACTCTTATTATTTCTGGA > 1:28573777/1‑68 CCTGGGCGATAACTAAACCATTTTTGAGTAATAAATGAAACAACTGCAACACTCTTATTATTTCTGGA > 1:18389323/1‑68 CCTGGGCGATAACTAAACCATTTTTGAGTAATAAATGAAACAACTGCAACACTCTTATTATTTCTGGA > 1:17241752/1‑68 CCTGGGCGATAACTAAACCATTTTTGAGTAATAAATGAAACAACTGCAACACTCTTATTATTTCTGGA > 1:35517767/1‑68 CCTGGGCGATAACTAAACCATTTTTGAGTAATAAATGAAACAACTGCAACACTCTTATTATTTCTGGA > 1:38182751/1‑68 CCTGGGCGATAACTAAACCATTTTTGAGTAATAAATGAAACAACTGCAACACTCTTATTATTTCTGGA > 1:1337513/1‑68 CCTGGGCGATAACTAAACCATTTTTGAGTAATAAATGAAACAACTGCAACACTCTTATTATTTCTGGA > 1:4034057/1‑68 CCTGGGCGATAACTAAACCATTTTTGAGTAATAAATGAAACAACTGCAACAATCTTATTATTTCTGGA > 1:28907741/1‑68 CCTGGGCGATAACTAAACCATTTTTGAGTAATAAAAGAAACAACTGCAACACTCTTATTATTTCTGGA > 1:15286794/1‑68 CTGGGCGATAACTAAACCATTTTTGAGTAATAAATGAAACAACTGCAACACTCTTATTATTTCTGGAA > 1:7043711/1‑68 GGCGATAACTAAACCATTTTTGAGTAATAAATGAAACAACTGCAACACTCTTATTATTTCTGGAAAAC > 1:37290642/1‑68 GCGATAACTAAACCATTTTTGAGTAATAAATGAAACAACTGCAACACTCTTATTATTTCTGGAAAAC > 1:31813744/1‑67 GCGATAACTAAACCATTTTTGAGTAATAAATGAAACAACTGCAACACTCTTATTATTTCTGGAAAAC > 1:29235683/1‑67 GCGATAACTAAACCATTTTTGAGTAATAAATGAAACAACTGCAACACTCTTATTATTTCTGGAAAAC > 1:5874850/1‑67 GCGATAACTAAACCATTTTTGAGTAATAAATGAAACAACTGCAACACTCTTATTATTTCTGGAAAAC > 1:7641615/1‑67 GCGATAACTAAACCATTTTTGAGTAATAAATGAAACAACTGCAACACTCTTATTATTTCTGGAAAAC > 1:9574968/1‑67 GCGATAACTAAACCATTTTTGAGTAATAAATGAAACAACTGCAACACTCTTATTATTTCTGGAAAAC > 1:24500795/1‑67 GCGATAACTAAACCATTTTTGAGTAATAAATGAAACAACTGCAACACTCTTATTATTTCTGGAAAAC > 1:22347136/1‑67 GCGATAACTAAACCATTTTTGAGTAATAAATGAAACAACTGCAACACTCTTATTATTTCTGGAAAAC > 1:19049045/1‑67 CGATAACTAAACCATTTTTGAGTAATAAATGAAACAACTGCAACACTCTTATTATTTCTGGAAAACG > 1:3861548/1‑67 AACTAAACCATTTTTGAGTAATAAATGAAACAACTGCAACACTCTTATTATTTCTGGAAAACGCCTC > 1:8672974/1‑67 AACTAAACCATTTTTGAGTAATAAATGAAACAACTGCAACACTCTTATTATTTCTGGAAAACGCCTC > 1:35846043/1‑67 ACTAAACCATTTTTGAGTAATAAATGAAACAACTGCAACACTCTTATTATTTCTGGAAAACGCCTCGC > 1:3115433/1‑68 ACTAAACCATTTTTGAGTAATAAATGAAACAACTGCAACACTCTTATTATTTCTGGAAAACGCCTCGC > 1:24712856/1‑68 ACTAAACCATTTTTGAGTAATAAATGAAACAACTGCAACACTCTTATTATTTCTGGAAAACGCCTCGC > 1:4325112/1‑68 AACCATTTTTGAGTAATAAATGAAACAACTGCAACACTCTTATTATTTCTGGAAAACGCCTCGCAAAA < 1:32960708/68‑1 AACCATTTTTGAGTAATAAATGAAACAACTGCAACACTCTTATTATTTCTGGAAAACGCCTCGCAAAA < 1:18149368/68‑1 AACCATTTTTGAGTAATAAATGAAACAACTGCAACACTCTTATTATTTCTGGAAAACGCCTCGCAAAA < 1:15867227/68‑1 AACCATTTTTGAGTAATAAATGAAACAACTGCAACACTCTTATTATTTCTGGAAAACGCCTCGCAAAA < 1:22557267/68‑1 CCATTTTTGAGTAATAAATGAAACAACTGCAACACTCTTATTATTTCTGTAAAACGCCTCGCAAAAAg > 1:2168807/1‑67 CCATTTTTGAGTAATAAATGAAACAACTGCAACACTCTTATTATTTCTGGAAAACGCCTCGCAAAAAa > 1:26075874/1‑67 CAACTGCAACACTCTTATTATTTCTGGAAAACGCCTCGCAAAAATAAAAAATGATGCGTAAATGAGCT > 1:36035156/1‑68 TGCAACACTATTATTATTTCTGGAAAACGCCTCGCAAAAATAAAAAATGATGCGTAAATGAGCTTTCT < 1:30186688/68‑1 tCTCATATTATATCTGGAAAACGCCTCGCAAAAATAAAAAATGATGCGTAAATGAGCTTTCTTTAAAG < 1:14157905/67‑1 ACTCTTATTATTTCTGGAAAACGCCTCGCAAAAATAAAAAATGATGCGTAAATGAGCTTTATTTAAAG > 1:1268579/1‑68 ACTCTTATTATTTCTGGAAAACGCCTCGCAAAAAAAAAAAATGATGCTTAAATGAGCTTTGTTTAAAG > 1:39275356/1‑68 CTTATAATTTCTGGAAAACGCCTCGCAAAAATAAAAAATGATGCGTAAATGAGCTTTCTTTAAAG < 1:20720118/65‑1 TCTGGAAAACGCCTCGCAAAAATAAAAAATGATGCGTAAATGAGCTTTCTTTAAAGATTCGGCAAGGG > 1:26688052/1‑68 TCTGGAAAACGCCTCGCAAAAATAAAAAATGATGCGTAAATGAGCTTTCTTTAAAGATTCGGCAAGGG > 1:38839131/1‑68 TCTGGAAAACGCCTCGCAAAAATAAAAAATGATGCGTAAATGAGCTTTCTTTAAAGATTCGGCAAGGG > 1:25880538/1‑68 TCTGGAAAACGCCTCGCAAAAATAAAAAATGATGCGTAAATGAGCTTTCTTTAAAGATTCGGCAAGGG > 1:24959600/1‑68 TCTGGAAAACGCCTCGCAAAAATAAAAAATGATGCGTAAATGAGCTTTCTTTAAAGATTCGGCAAGGG > 1:23206881/1‑68 TCTGGAAAACGCCTCGCAAAAATAAAAAATGATGCGTAAATGAGCTTTCTTTAAAGATTCGGCAAGGG > 1:7923740/1‑68 TCTGGAAAACGCCTCGCAAAAATAAAAAATGATGCGTAAATGAGCTTTCTTTAAAGATTCGGCAAGGG > 1:11552446/1‑68 TCTGGAAAACGCCTCGCAAAAATAAAAAATGATGCGTAAATGAGCTTTCTTTAAAGATTCGGCAAGGG > 1:33856733/1‑68 TCTGGAAAACGCCTCGCAAAAATAAAAAATGATGCGTAAATGAGCTTTCTTTAAAGATTCGGCAAGGG > 1:16395704/1‑68 CTGGAAAACGCCTCGCAAAAATAAAAAATGATGCGTAAATGAGCTTTCTTTAAAGATTCGGCAAGGGT > 1:23742325/1‑68 CTGGAAAACGCCTCGCAAAAATAAAAAATGATGCGTAAATGAGCTTTCTTTAAAGATTCGGCAAGGGT < 1:5390437/68‑1 CTGGAAAACGCCTCGCAAAAATAAAAAATGATGCGTAAATGAGCTTTCTTCAAAGATTCGGCAAGGGT < 1:25579093/68‑1 CTGGAAAACGACTCGCAAAAATAAAAAATGATGCTTAAATGAGCTTTCTTTAAAGATTCGGCAAGGGT < 1:18774969/68‑1 GGAAAACGCCTCGCAAAAATAAAAAATGATGCGTAAATGAGCTTTCTTTAAAGATTCGGCAAGGGTAC < 1:10814033/68‑1 GAAAACGCCTCGCAAAAATAAAAAATGATGCGTAAATGAGCTTTCTTTAAAGATTCGGCAAGGGTACT > 1:31419319/1‑68 AAAACGCCTCGCAAAAATAAAAAATGATGCGTAAATGAGCTTTCTTTAAAGATTCGGCAAGGGTACTT > 1:7396429/1‑68 AAAACGCCTCGCAAAAATAAAAAATGATGCGTAAATGAGCTTTCTTTAAAGATTCGGCAAGGGTACTT > 1:28641037/1‑68 AAAACGCCTCGCAAAAATAAAAAATGATGCGTAAATGAGCTTTCTTTAAAGATTCGGCAAGGGTACTT > 1:19807671/1‑68 AAAACGCCTCGCAAAAATAAAAAATGATGCGTAAATGAGCTTTCTTTAAAGATTCGGCAAGGGTACTT > 1:36879787/1‑68 AAAACGCCTCGCAAAAATAAAAAATGATGCGTAAATGAGCTTTCTTTAAAGATTCGGCAAGGGTACTT > 1:14715337/1‑68 AAAACGCCTCGCAAAAATAAAAAATGATGCGTAAATGAGCTTTCTTTAAAGATTCGGCAAGGGTACTT > 1:29485710/1‑68 AAAACGCCTCGCAAAAATAAAAAATGATGCGTAAATGAGCTTTCTTTAAAGATTCGGCAAGGGTACTT > 1:8981613/1‑68 AAAACGCCTCGCAAAAATAAAAAATGATGCGTAAATGAGCTTTCTTTAAAGATTCGGCAAGGGTACTT > 1:11887411/1‑68 aatCGCCTCGCAAAAATAAAAAATGATGCGTAAATGAGCTTTCTTTAAAGATTCGGCAAGGGTACTTT < 1:9287858/65‑1 AAACGCCTCGCAAAAATAAAAAATGATGCGTAAATGAGCTTTCTTTAAAGATTCGGCAAGGGTACTTT < 1:20324215/68‑1 AAACGCCTCGCAAAAATAAAAAATGATGCGTAAATGAGCTTTCTTTAAAGATTCGGCAAGGGTACTTT > 1:36317075/1‑68 AAACGCCTCGCAAAAATAAAAAATGATGCGTAAATGAGCTTTCTTTAAAGATTCGGCAAGGGTACTTT < 1:6879380/68‑1 AAACGCCTCGCAAAAATAAAAAATGATGCGTAAATGAGCTTTCTTTAAAGATTCGGCAAGGGTACTTT < 1:11286688/68‑1 AAACGCCTCGCAAAAATAAAAAATGATGCGTAAATGAGCTTTCTTTAAAGATTCGGCAAGGGTACTTT < 1:26191247/68‑1 AAACGCCTCGCAAAAATAAAAAATGATGCGTAAATGAGCTTTCTTTAAAGATTCGGCAAGGGTACTT < 1:14358830/67‑1 ACGCCTCGCAAAAATAAAAAATGATGCGTATATGAGCTTTCTTTAAAGATTCGGCAAGGGTACTTTTC < 1:29667056/68‑1 ACGCCTCGCAAAAATAAAAAATGATGCGTAAATGAGCTTTGTTTAAAGATTCTTCAAGGGTACTTT > 1:14586643/1‑66 ACGCCTCGCAAAAATAAAAAATGATGCGTAAATGAGCTTTCTTTAAAGATTCGGCAAGGGTACTTTTC < 1:17629103/68‑1 ACGCCTCGCAAAAATAAAAAATGATGCGTAAATGAGCTTTCTTTAAAGATTCGGCAAGGGTACTTTTC < 1:19399840/68‑1 ACGCCTCGCAAAAATAAAAAATGATGCGTAAATGAGCTTTCTTTAAAGATTCGGCAAGGGTACTTTTC < 1:2715733/68‑1 ACGCCTCGCAAAAATAAAAAATGATGCGTAAATGAGCTTTCTTTAAAGATTCGGCAAGGGTACTTTTC < 1:16915110/68‑1 ACGCCTCGCAAAAATAAAAAATGATGCGTAAATGAGCTTTCTTTAAAGATTCGGCAAGGGTACTTTTC < 1:35013022/68‑1 ACGCCTCGCAAAAATAAAAAATGATGCGTAAATGAGCTTTCTTTAAAGATTCGGCAAGGGTACTTTTC < 1:34523794/68‑1 ACGCCTCGCAAAAATAAAAAATGATGCGTAAATGAGCTTTCTTTAAAGATTCGGCAAGGGTACTTTTC < 1:33439300/68‑1 ACGCCTCGCAAAAATAAAAAATGATGCGTAAATGAGCTTTCTTTAAAGATTCGGCAAGGGTACTTT > 1:29926874/1‑66 ACGCCTCGCAAAAATAAAAAATGATGCGTAAATGAGCTTTCTTTAAAGATTCGGCAAGGGTACTTT > 1:22930937/1‑66 ACGCCTCGCAAAAATAAAAAATGATGCGTAAATGAGCTTTCTTTAAAGATTCGGCAAGGGTACTTT > 1:35132726/1‑66 ACGCCTCGCAAAAATAAAAAATGATGCGTAAATGAGCTTTCTTTAAAGATTCGGCAAGGGTACTTT > 1:30500966/1‑66 GCCTCGCAAAAATAAAAAATGATGCGTAAATGAGCTTTCTTTAAAGATTCGGCAAGGGTACTTTTC > 1:10452305/1‑66 GCCTCGCAAAAATAAAAAATGATGCGTAAATGAGCTTTCTTTAAAGATTCGGCAAGGGTACTTTTC > 1:21021622/1‑66 GCCTCGCAAAAATAAAAAATGATGCGTAAATGAGCTTTCTTTAAAGATTCGGCAAGGGTACTTTTC > 1:22192940/1‑66 CTCGCAAAAATAAAAAATGATGCGTAAATGAGCTTTCTTTAAAGATTCGGCAAGGGTACTTTTCTCT < 1:6546417/67‑1 CTCGCAAAAATAAAAAATGATGCGTAAATGAGCTTTCTTTAAAGATTCGGCAAGGGTACTTTTCTCT < 1:23006380/67‑1 TCGCAAAAATAAAAAATGATGCGTAAATGAGCTTTCTTTAAAGATTCGGCAAGGGTACTTTTCTCTCC < 1:13690014/68‑1 TCGCAAAAATAAAAAATGATGCGTAAATGAGCTTTCTTTAAAGATTCGGCAAGGGTACTTTTCTCTCC < 1:1037315/68‑1 AAAATAAAAAATGATGCGTAAATGAGCTTTCTTTAAAGATTCGGCAAGGGTACTTTTCTCTCCATAGA < 1:24223823/68‑1 AAATAAAAAATGATGCGTAAATGAGCTTTCTTTAAAGATTCGGCAAGGGTACTTTTCTCTCCATAGAT < 1:4949283/68‑1 TTCATCCTGGGCGATAACTAAACCATTTTTGAGTAATAAATGAAACAACTGCAACACTCTTATTATTTCTGGAAAACGCCTCGCAAAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/4072469‑4072557‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tctggaaaacgcctcgcaaaaaTAAAAAATGATGCGTAAATGAGCTTTCTTTAAAGATTCGGCAAGGGTACTTTTCTCTCCATAGATTC > CP009273/4072996‑4073062 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |