| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 4072557 | 331 (0.700) | 30 (0.100) | 12/68 | NT | 7.5% | intergenic (+759/‑100) | yiiD/yiiE | putative acetyltransferase/CopG family putative transcriptional regulator |
| ? | CP009273 | 4072996 = | 542 (1.880) | intergenic (+127/‑115) | yiiE/yiiF | CopG family putative transcriptional regulator/putative thymol sensitivity protein, CopG family putative transcriptional regulator | |||||
Only 100 of 1045 total aligned reads displayed.
GGCTGTTTTACTTGAACTTATAATAACTGCAACTGTTACATCATATCTGGAAAACGCCTCGCAAAAATAAAAAATGATGCGTAAATGAGCTTTCTTTAAAGATTCGGCAAGGGTACTTTTCTCTCCATAGATTCA > CP009273/4072929‑4073063 | gCTGTTTTACTTGAACTTATAATAACTGCAACTGTTACATCATATCTGGAAAACGCCTCGCAAAAATa > 1:23110886/1‑68 (MQ=255) gCTGTTTTACTTGAACTTATAATAACTGCAACTGTTACATCATATCTGGAAAACGCCTCGCAAAAATa > 1:2492029/1‑68 (MQ=255) gCTGTTTTACTTGAACTTATAATAACTGCAACTGTTACATCATATCTGGAAAACGCCTCGCAAAAATa > 1:8114704/1‑68 (MQ=255) gCTGTTTTACTTGAACTTATAATAACTGCAACTGTTACATCATATCTGGAAAACGCCTCGCAAAAATa > 1:7679352/1‑68 (MQ=255) gCTGTTTTACTTGAACTTATAATAACTGCAACTGTTACATCATATCTGGAAAACGCCTCGCAAAAATa > 1:20547835/1‑68 (MQ=255) gCTGTTTTACTTGAACTTATAATAACTGCAACTGTTACATCATATCTGGAAAACGCCTCGCAAAAATa > 1:29017348/1‑68 (MQ=255) gCTGTTTTACTTGAACTTATAATAACTGCAACTGTTACATCATATCTGGAAAACGCCTCGCAAAAATa > 1:4528663/1‑68 (MQ=255) gCTGTTTTACTTGAACTTATAATAACTGCAACTGTTACATCATATCTGGAAAACGCCTCGCAAAAATa > 1:31577393/1‑68 (MQ=255) gCTGTTTTACTTGAACTTATAATAACTGCAACTGTTACATCATATCTGGAAAACGCCTCGCAAAAATa > 1:33159377/1‑68 (MQ=255) cTGTTTTACTTGAACTTATAATAACTGCAACTGTTACATCATATCTGGAAAACGCCTCGCAAAAAt < 1:10078662/66‑1 (MQ=255) tGTTTTACTTGAACTTATAATAACTGCAACTGTTACATCATATCTGGAAAACGCCTCGCAAAAATaa < 1:25804340/67‑1 (MQ=255) tttACTTGAACTTATAATAACTGCAACTGTTACATCATATCTGGAAAACGCCTCGCAAAAATaaaaaa > 1:27281904/1‑68 (MQ=255) aCTTGAACTTATAATAACTGCAACTGTTACATCATATCTGGAAAACGCCTCGCAAAAATAAAAAatga > 1:11478345/1‑68 (MQ=255) ttGAACTTATAATAACTGCAACTGTTACATCATATCTGGAAAACGCCTCGCAAAAATAAAAAatgat > 1:38711683/1‑67 (MQ=255) ttGAACTTATAATAACTGCAACTGTTACATCATATCTGGAAAACGCCTCGCAAAAATAAAAAatgat > 1:25554768/1‑67 (MQ=255) ttGAACTTATAATAACTGCAACTGTTACATCATATCTGGAAAACGCCTCGCAAAAATAAAAAatgat > 1:18343020/1‑67 (MQ=255) ttGAACTTATAATAACTGCAACTGTTACATCATATCTGGAAAACGCCTCGCAAAAATAAAAAatgat > 1:1043930/1‑67 (MQ=255) ttGAACTTATAATAACTGCAACTGTTACATCATATCTGGAAAACGCCTCGCAAAAATAAAAAatgat > 1:7035451/1‑67 (MQ=255) ttGAACTTATAATAACTGCAACTGTTACATCATATCTGGAAAACGCCTCGCAAAAATAAAAAatgat > 1:39320755/1‑67 (MQ=255) tGAACTTATAATAACTGCAACTGTTACATCATATCTGGAAAACGCCTCGCAAAAATAAAAAATGATGc < 1:1301095/68‑1 (MQ=255) tGAACTTATAATAACTGCAACTGTTACATCATATCTGGAAAACGCCTCGCAAAAATAAAAAATGATGc < 1:35457959/68‑1 (MQ=255) tGAACTTATAATAACTGCAACTGTTACATCATATCTGGAAAACGCCTCGCAAAAATAAAAAATGATGc < 1:3912775/68‑1 (MQ=255) tGAACTTATAATAACTGCAACTGTTACATCATATCTGGAAAACGCCTCGCAAAAATAAAAAATGATGc < 1:401578/68‑1 (MQ=255) aCTTATAATAACTGCAACTGTTACATCATATCTGGAAAACGCCTCGCAAAAATAAAAAATGATGCGTa < 1:28315162/68‑1 (MQ=255) aCTTATAATAACTGCAACTGTTACATCATATCTGGAAAACGCCTCGCAAAAATAAAAAATGATGCGTa < 1:26497264/68‑1 (MQ=255) ttATAATAACTGCAACTGTTACATCATATCTGGAAAACGCCTCGCAAAAATGAAAAATGATGCGTaaa > 1:16485302/1‑68 (MQ=255) aataaCTGCAACTGTTACATCATATCTGGAAAACGCCTCGCAAAAATAAAAAATGATGCGTAAATGa > 1:6773637/1‑67 (MQ=255) aataaCTGCAACTGTTACATCATATCTGGAAAACGCCTCGCAAAAATAAAAAATGATGCGTAAATGa > 1:36825730/1‑67 (MQ=255) aataaCTGCAACTGTTACATCATATCTGGAAAACGCCTCGCAAAAATAAAAAATGATGCGTAAATGa > 1:25256622/1‑67 (MQ=255) ataaCTGCAACTGTTACATCATATCTGGAAAACGCCTCGCAAAAATAAAAAATGATGCGTAAATGa > 1:5685077/1‑66 (MQ=255) ataaCTGCAACTGTTACATCATATCTGGAAAACGCCTCGCAAAAATAAAAAATGATGCGTAAATGa > 1:15278014/1‑66 (MQ=255) ataaCTGCAACTGTTACATCATATCTGGAAAACGCCTCGCAAAAATAAAAAATGATGCGTAAATGa > 1:21588987/1‑66 (MQ=255) taaCTGCAACTGTTACATCATATCTGGAAAACGCCTCGCAAAAATAAAAAATGATGCGTAAATGAGct > 1:12148314/1‑68 (MQ=255) aCTGCAACTGTTACATCATATCTGGAAAACGCCTCGCAAAAATAAAAAATGATGCGTAAATGAGctt > 1:37916588/1‑67 (MQ=255) aCTGCAACTGTTACATCATATCTGGAAAACGCCTCGCAAAAATAAAAAATGATGCGTAAATGAGctt > 1:9637113/1‑67 (MQ=255) aCTGCAACTGTTACATCATATCTGGAAAACGCCTCGCAAAAATAAAAAATGATGCGTAAATGAGctt > 1:9137650/1‑67 (MQ=255) aCTGCAACTGTTACATCATATCTGGAAAACGCCTCGCAAAAATAAAAAATGATGCGTAAATGAGctt > 1:10838224/1‑67 (MQ=255) aCTGCAACTGTTACATCATATCTGGAAAACGCCTCGCAAAAATAAAAAATGATGCGTAAATGAGctt > 1:22374194/1‑67 (MQ=255) aCTGCAACTGTTACATCATATCTGGAAAACGCCTCGCAAAAATAAAAAATGATGCGTAAATGAGctt > 1:20898793/1‑67 (MQ=255) aCTGCAACTGTTACATCATATCTGGAAAACGCCTCGCAAAAATAAAAAATGATGCGTAAATGAGctt > 1:18971772/1‑67 (MQ=255) cTGCAACTGTTACATCATATCTGGAAAACGCCTCGCAAAAATAAAAAATGATGCGTAAATGAGctt > 1:29296920/1‑66 (MQ=255) tgcaacactcttattatttctggaaaacgcctcgcaaaaaTAAAAAATGATGCGTAAATGAGctttct < 1:15662941‑M2/28‑1 (MQ=255) tGCAACTGTTACATCATATCTGGAAAACGCCTCGCAAAAATAAAAAATGATGCGTAAATGAGctttct < 1:16153157/68‑1 (MQ=255) tGCAACTGTTACATCATATCTGGAAAACGCCTCGCAAAAATAAAAAATGATGCGTAAATGAGctttct > 1:37021669/1‑68 (MQ=255) tGCAACTGTTACATCATATCTGGAAAACGCCTCGCAAAAATAAAAAATGATGCGTAAATGAGctttct > 1:34340232/1‑68 (MQ=255) tGCAACTGTTACATCATATCTGGAAAACGCCTCGCAAAAATAAAAAATGATGCGTAAATGAGctttct > 1:33589136/1‑68 (MQ=255) tGCAACTGTTACATCATATCTGGAAAACGCCTCGCAAAAATAAAAAATGATGCGTAAATGAGctttct < 1:32732648/68‑1 (MQ=255) tGCAACTGTTACATCATATCTGGAAAACGCCTCGCAAAAATAAAAAATGATGCGTAAATGAGctttct > 1:27942202/1‑68 (MQ=255) aaCTGTTACATCATATCTGGAAAACGCCTCGCAAAAATAAAAAATGATGCGTAAATGAGCTTTCTTTa < 1:237547/68‑1 (MQ=255) aaCTGTTACATCATATCTGGAAAACGCCTCGCAAAAATAAAAAATGATGCGTAAATGAGCTTTCTTTa > 1:11651310/1‑68 (MQ=255) aCTGTTACATCATATCTGGAAAACGCCTCGCAAAAATAAAAAATGATGCGTAAATGAGCTTTCTTTaa > 1:38347991/1‑68 (MQ=255) tGTTACATCATATCTGGAAAACGCCTCGCAAAAATAAAAAATGATGCGTAAATGAGCTTTCTTTAAAg > 1:19626189/1‑68 (MQ=255) tGTTACATCATATCTGGAAAACGCCTCGCAAAAATAAAAAATGATGCGTAAATGAGCTTTCTTTAAAg > 1:36110500/1‑68 (MQ=255) tGTTACATCATATCTGGAAAACGCCTCGCAAAAATAAAAAATGATGCGTAAATGAGCTTTCTTTAAAg > 1:30903888/1‑68 (MQ=255) catcatATCTGGAAAACGCCTCGCAAAAATAAAAAATGATGCGTAAATGAGCTTTCTTTAAAGATTCg > 1:3010668/1‑68 (MQ=255) atcatATCTGGAAAACGCCTCGCAAAAATAAAAAATGATGCGTAAATGAGCTTTCTTTAAAGATTCg > 1:1250730/1‑67 (MQ=255) atcatATCTGGAAAACGCCTCGCAAAAATAAAAAATGATGCGTAAATGAGCTTTCTTTAAAGATTCg > 1:31298866/1‑67 (MQ=255) atcatATCTGGAAAACGCCTCGCAAAAATAAAAAATGATGCGTAAATGAGCTTTCTTTAAAGATTCg > 1:35760904/1‑67 (MQ=255) atcatATCTGGAAAACGCCTCGCAAAAATAAAAAATGATGCGTAAATGAGCTTTCTTTAAAGATTCg > 1:32020785/1‑67 (MQ=255) atcatATCTGGAAAACGCCTCGCAAAAATAAAAAATGATGCGTAAATGAGCTTTCTTTAAAGATTCg > 1:22004471/1‑67 (MQ=255) atcatATCTGGAAAACGCCTCGCAAAAATAAAAAATGATGCGTAAATGAGCTTTCTTTAAAGATTCg > 1:16856781/1‑67 (MQ=255) atcatATCTGGAAAACGCCTCGCAAAAATAAAAAATGATGCGTAAATGAGCTTTCTTTAAAGATTCg > 1:36602688/1‑67 (MQ=255) atcatATCTGGAAAACGCCTCGCAAAAATAAAAAATGATGCGTAAATGAGCTTTCTTTAAAGATTCg > 1:3760022/1‑67 (MQ=255) atcatATCTGGAAAACGCCTCGCAAAAATAAAAAATGATGCGTAAATGAGCTTTCTTTAAAGATTCg > 1:33947234/1‑67 (MQ=255) atcatATCTGGAAAACGCCTCGCAAAAATAAAAAATGATGCGTAAATGAGCTTTCTTTAAAGATTCg > 1:37219512/1‑67 (MQ=255) atcatATCTGGAAAACGCCTCGCAAAAATAAAAAATGATGCGTAAATGAGCTTTCTTTAAAGATTCg > 1:28650440/1‑67 (MQ=255) atcatATCTGGAAAACGCCTCGCAAAAATAAAAAATGATGCGTAAATGAGCTTTCTTTAAAGATTCg > 1:35135867/1‑67 (MQ=255) catATCTGGAAAACGCCTCGCAAAAATAAAAAATGATGCGTAAATGAGCTTTCTTTAAAGATTCGGCa > 1:2126776/1‑68 (MQ=255) catATCTGGAAAACGCCTCGCAAAAATAAAAAATGATGCGTAAATGAGCTTTCTTTAAAGATTCGGCa > 1:13272261/1‑68 (MQ=255) catATCTGGAAAACGCCTCGCAAAAATAAAAAATGATGCGTAAATGAGCTTTCTTTAAAGATTCGGCa > 1:8518074/1‑68 (MQ=255) catATCTGGAAAACGCCTCGCAAAAATAAAAAATGATGCGTAAATGAGCTTTCTTTAAAGATTCGGCa > 1:14825809/1‑68 (MQ=255) catATCTGGAAAACGCCTCGCAAAAATAAAAAATGATGCGTAAATGAGCTTTCTTTAAAGATTCGGCa > 1:14020752/1‑68 (MQ=255) catATCTGGAAAACGCCTCGCAAAAATAAAAAATGATGCGTAAATGAGCTTTCTTTAAAGATTCGGCa > 1:19992150/1‑68 (MQ=255) catATCTGGAAAACGCCTCGCAAAAATAAAAAATGATGCGTAAATGAGCTTTCTTTAAAGATTCGGCa > 1:29822355/1‑68 (MQ=255) catATCTGGAAAACGCCTCGCAAAAATAAAAAATGATGCGTAAATGAGCTTTCTTTAAAGATTCGGCa > 1:27732230/1‑68 (MQ=255) catATCTGGAAAACGCCTCGCAAAAATAAAAAATGATGCGTAAATGAGCTTTCTTTAAAGATTCGGCa > 1:32314525/1‑68 (MQ=255) catATCTGGAAAACGCCTCGCAAAAATAAAAAATGATGCGTAAATGAGCTTTCTTTAAAGATTCGGCa > 1:20240632/1‑68 (MQ=255) catATCTGGAAAACGCCTCGCAAAAATAAAAAATGATGCGTAAATGAGCTTTCTTTAAAGATTCGGCa > 1:26164059/1‑68 (MQ=255) catATCTGGAAAACGCCTCGCAAAAATAAAAAATGATGCGTAAATGAGCTTTCTTTAAAGATTCGCCa > 1:30665840/1‑68 (MQ=255) tatCTGGAAAACGCCTCGCAAAAATAAAAAATGATGCGTAAATGAGCTTTCTTTAAAGATTCGGCAAg < 1:8893632/68‑1 (MQ=255) tctggaaaacgcctcgcaaaaaTAAAAAATGATGCGTAAATGAGCTTTCTTTAAAGATTCGGCAAggg > 1:17271489‑M2/23‑68 (MQ=255) tctggaaaacgcctcgcaaaaaTAAAAAATGATGCGTAAATGAGCTTTCTTTAAAGATTCGGCAAggg > 1:22656985‑M2/23‑68 (MQ=255) tctggaaaacgcctcgcaaaaaTAAAAAATGATGCGTAAATGAGCTTTCTTTAAAGATTCGGCAAggg > 1:4927005‑M2/23‑68 (MQ=255) ctggaaaacgcctcgcaaaaaTAAAAAATGATGCGTAAATGAGCTTTCTTTAAAGATTCGGCAAGGGt > 1:26941914‑M2/22‑68 (MQ=255) ctggaaaacgactcgcaaaaaTAAAAAATGATGCTTAAATGAGCTTTCTTTAAAGATTCGGCAAGGGt < 1:18774969‑M2/47‑1 (MQ=255) ggaaaacgcctcgcaaaaaTAAAAAATGATGCGTAAATGAGCTTTCTTTAAAGATTCGGCAAGGGTAc < 1:9409109‑M2/49‑1 (MQ=255) aaaacgcctcgcaaaaaTAAAAAATGATGCGTAAATGAGCTTTCTTTAAAGATTCGGCAAGGGTACtt > 1:29509296‑M2/18‑68 (MQ=255) aaaacgcctcgcaaaaaTAAAAAATGATGCGTAAATGAGCTTTCTTTAAAGATTCGGCAAGGGTACtt > 1:7396429‑M2/18‑68 (MQ=255) aaacgcctcgcaaaaaTAAAAAATGATGCGTAAATGAGCTTTCTTTAAAGATTCGGCAAGGGTACttt > 1:36317075‑M2/17‑68 (MQ=255) aaacgcctcgcaaaaaTAAAAAATGATGCGTAAATGAGCTTTCTTTAAAGATTCGGCAAGGGTACttt > 1:6037417‑M2/17‑68 (MQ=255) aaacgcctcgcaaaaaTAAAAAATGATGCGTAAATGAGCTTTCTTTAAAGATTCGGCAAGGGTACttt < 1:530252‑M2/52‑1 (MQ=255) aaacgcctcgcaaaaaTAAAAAATGATGCGTAAATGAGCTTTCTTTAAAGATTCGGCAAGGGTACtt < 1:14358830‑M2/51‑1 (MQ=255) acgcctcgcaaaaaTAAAAAATGATGCGTAAATGAGCTTTGTTTAAAGATTCTTCAAGGGTACttt > 1:14586643‑M2/15‑66 (MQ=255) acgcctcgcaaaaaTAAAAAATGATGCGTAAATGAGCTTTCTTTAAAGATTCGGCAAGGGTACttt > 1:6327551‑M2/15‑66 (MQ=255) acgcctcgcaaaaaAAAAAAATGATGCGTAAATGAGCTTTCTTTAAAGATTCGGCAAGGGTACttt > 1:34959599‑M2/15‑66 (MQ=255) gcctcgcaaaaaTAAAAAATGATGCGTAAATCAGCTTTCTTTAAAGATTCGGCAAGGGTACTTTtc > 1:18075386‑M2/13‑66 (MQ=255) tcgcaaaaaTAAAAAATGATGCGTAAATGAGCTTTCTTTAAAGATTCGGCAAGGGTACTTTTCTCTcc < 1:13690014‑M2/59‑1 (MQ=255) aaaaTAAAAAATGATGCGTAAATGAGCTTTCTTTAAAGATTCGGCAAGGGTACTTTTCTCTCCATAGa < 1:24223823‑M2/64‑1 (MQ=255) aaaTAAAAAATGATGCGTAAATGAGCTTTCTTTAAAGATTCGGCAAGGGTACTTTTCTCTCCATAGAt < 1:17594530‑M2/65‑1 (MQ=255) tAAAAAATGATGCGTAAATGAGCTTTCTTTAAAGATTCGGCAAGGGTACTTTTCTCTCCATAGATTCa < 1:23501510/68‑1 (MQ=255) | GGCTGTTTTACTTGAACTTATAATAACTGCAACTGTTACATCATATCTGGAAAACGCCTCGCAAAAATAAAAAATGATGCGTAAATGAGCTTTCTTTAAAGATTCGGCAAGGGTACTTTTCTCTCCATAGATTCA > CP009273/4072929‑4073063 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |