| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 4072557 | 331 (0.700) | 30 (0.100) | 12/68 | NT | 7.5% | intergenic (+759/‑100) | yiiD/yiiE | putative acetyltransferase/CopG family putative transcriptional regulator |
| ? | CP009273 | 4072996 = | 542 (1.880) | intergenic (+127/‑115) | yiiE/yiiF | CopG family putative transcriptional regulator/putative thymol sensitivity protein, CopG family putative transcriptional regulator | |||||
Only 100 of 776 total aligned reads displayed.
ACCATTTTTGAGTAATAAATGAAACAACTGCAACACTCTTATTATTTCTGGAAAACGCCTCGCAAAAACAAAACAACATGCAAAAATCCGCTTTTTTTAAATGATTTTCCGGCGTAATTTTCGCACATACATTAA > CP009273/4072490‑4072624 | ccATTTTTGAGTAATAAATGAAACAACTGCAACACTCTTATTATTTCTGGAAAACGCCTCGCAaaaac > 1:26138914/1‑68 (MQ=255) cATTTTTGAGTAATAAATGAAACAACTGCAACACTCTTATTATTTCTGGAAAACGCCTCGCAaaaaca < 1:29427438/68‑1 (MQ=255) cATTTTTGAGTAATAAATGAAACAACTGCAACACTCTTATTATTTCTGGAAAACGCCTCGCAaaaaca < 1:31361482/68‑1 (MQ=255) cATTTTTGAGTAATAAATGAAACAACTGCAACACTCTTATTATTTCTGGAAAACGCCTCGCAAAAAaa > 1:10049349‑M1/1‑66 (MQ=255) tttGAGTAATAAATGAAACAACTGCAACACTCTTATTATTTCTGGAAAACGCCTCGCAaaaacaaaac > 1:7556952/1‑68 (MQ=255) tttGAGTAATAAATGAAACAACTGCAACACTCTTATTATTTCTGGAAAACGCCTCGCAaaaacaaaac > 1:12202145/1‑68 (MQ=255) tGAGTAATAAATGAAACAACTGCAACACTCTTATTATTTCTGGAAAACGCCTCGCAAaaacaaaaca > 1:4960655/1‑67 (MQ=255) tGAGTAATAAATGAAACAACTGCAACACTCTTATTATTTCTGGAAAACGCCTCGCAAaaacaaaaca > 1:19097521/1‑67 (MQ=255) gAGTAATAAATGAAACAACTGCAACACTCTTATTATTTCTGGAAAACGCCTCGCAAAAACAAaacaac < 1:37549867/68‑1 (MQ=255) aGTAATAAATGAAACAACTGCAACACTCTTATTATTTCTGGAAAACGCCTCGCAAAAACAAAacaaca > 1:9050153/1‑68 (MQ=255) aataaATGAAACAACTGCAACACTCTTATTATTTCTGGAAAACGCCTCGCAAAAACAAAACAACATGc < 1:33790266/68‑1 (MQ=255) aTGAAACAACTGCAACACTCTTATTATTTCTGGAAAACGCCTCGCAAAAAtaaaaaatgatgcgtaaa > 1:21972045‑M1/1‑50 (MQ=255) aTGAAACAACTGCAACACTCTTATTATTTCTGGAAAACGCCTCGCAAAAACAAAACAACATGCaaaaa < 1:31563039/68‑1 (MQ=255) aTGAAACAACTGCAACACTCTTATTATTTCTGGAAAACGCCTCGCAAAAACAAAACAACATGCaaaaa > 1:20029445/1‑68 (MQ=255) acaacTGCAACACTCTTATTATTTCTGGAAAACGCCTCGCAAAAACAAAACAACATGCAAAAATcc > 1:18841560/1‑66 (MQ=255) acaacTGCAACACTCTTATTATTTCTGGAAAACGCCTCGCAAAAACAAAACAACATGCAAAAATcc > 1:16141418/1‑66 (MQ=255) caacTGCAACACTCTTATTATTTCTGGAAAACGCCTCGCAAAAACAAAACAACATGCAAAAATCCGCt > 1:18583954/1‑68 (MQ=255) caacTGCAACACTCTTATTATTTCTGGAAAACGCCTCGCAAAAACAAAACAACATGCAAAAATCCGCt > 1:11145210/1‑68 (MQ=255) tGCAACACTCTTATTATTTCTGGAAAACGCCTCGCAAAAACAAAACAACATGCAAAAATCCGCttttt > 1:5521519/1‑68 (MQ=255) tGCAACACTCTTATTATTTCTGGAAAACGCCTCGCAAAAACAAAACAACATGCAAAAATCCGCttttt > 1:20776257/1‑68 (MQ=255) tGCAACACTCTTATTATTTCTGGAAAACGCCTCGCAAAAACAAAACAACATGCAAAAATCCGCttttt < 1:38999935/68‑1 (MQ=255) tGCAACACTCTTATTATTTCTGGAAAACGCCTCGCAAAAACAAAACAACATGCAAAAATCCGCttttt > 1:32555453/1‑68 (MQ=255) tGCAACACTCTTATTATTTCTGGAAAACGCCTCGCAAAAACAAAACAACATGCAAAAATCCGCttttt < 1:23381972/68‑1 (MQ=255) gCAACACTCTTATTATTCCTGGAAAACGCCTCGCAAAAACAAAACAACATGCAAAAATCCGCtttttt > 1:25766200/1‑68 (MQ=255) aaCACTCTTATTATTTCTGGAAAACGCCTCGCAAAAACAAAACAACATGCAAAAATCCGCTTTTTTTa > 1:6897606/1‑68 (MQ=255) aaCACTCTTATTATTTCTGGAAAACGCCTCGCAAAAACAAAACAACATGCAAAAATCCGCTTTTTTTa > 1:19598052/1‑68 (MQ=255) acTCTTATTATTTCTGGAAAACGCCTCGCAAAAAaaaaaaatcatgcttaaatcagctttttttaaat > 1:39316961‑M1/1‑34 (MQ=255) acTCTTATTATTTCTGGAAAACGCCTCGCAAAAACAAAACAACATGCAAAAATCCGCTTTTTTTAAAt > 1:30904974/1‑68 (MQ=255) tctTATTATTTCTGGAAAACGCCTCGCAAAAACAAAACAACATGCAAAAATCCGCTTTTTTTAAATGa > 1:3486729/1‑68 (MQ=255) tctTATTATTTCTGGAAAACGCCTCGCAAAAACAAAACAACATGCAAAAATCCGCTTTTTTTAAATGa > 1:38239006/1‑68 (MQ=255) tctTATTATTTCTGGAAAACGCCTCGCAAAAACAAAACAACATGCAAAAATCCGCTTTTTTTAAATGa > 1:25939628/1‑68 (MQ=255) tctTATTATTTCTGGAAAACGCCTCGCAAAAACAAAACAACATGCAAAAATCAGCTTTTTTTAAATGa > 1:18273497/1‑68 (MQ=255) ctTATTATTTCTGGAAAACGCCTCGCAAAAACAAAACAACATGCAAAAATCCGCTTTTTTTAAATGAt < 1:24196252/68‑1 (MQ=255) tattTCTGGAAAACGCCTCGCAAAAAtaaaaaatgatgcataaatgagctttctttaaagattcggca > 1:35473197‑M1/1‑26 (MQ=255) tattTCTGGAAAACGCCTCGCAAAAACAAAACAACATGCAAAAATCCGCTTTTTTTAAATGATTTTcc > 1:17272570/1‑68 (MQ=255) tattTCTGGAAAACGCCTCGCAAAAACAAAACAACATGCAAAAATCCGCTTTTTTTAAATGATTTTcc > 1:34657269/1‑68 (MQ=255) tattTCTGGAAAACGCCTCGCAAAAACAAAACAACATGCAAAAATCCGCTTTTTTTAAATGATTTTcc > 1:12922676/1‑68 (MQ=255) tattTCTGGAAAACGCCTCGCAAAAACAAAACAACATGCAAAAATCCGCTTTTTTTAAATGATTTTcc > 1:30407952/1‑68 (MQ=255) tattTCTGGAAAACGCCTCGCAAAAACAAAACAACATGCAAAAATCCGCTTTTTTTAAATGATTTTcc > 1:28691025/1‑68 (MQ=255) tattTCTGGAAAACGCCTCGCAAAAACAAAACAACATGCAAAAATCCGCTTTTTTTAAATGATTTTcc > 1:13965307/1‑68 (MQ=255) tattTCTGGAAAACGCCTCGCAAAAACAAAACAACATGCAAAAATCCGCTTTTTTTAAATGATTTTcc > 1:673278/1‑68 (MQ=255) tattTCTGGAAAACGCCTCGCAAAAACAAAACAACATGCAAAAATCCGCTTTTTTTAAATGATTTTcc > 1:16404549/1‑68 (MQ=255) tttCTGGAAAACGCCTCGCAAAAACAAAACAACATGCAAAAATCCGCTTTTTTTAAATGATTTTCCg > 1:24594561/1‑67 (MQ=255) tttCTGGAAAACGCCTCGCAAAAACAAAACAACATGCAAAAATCCGCTTTTTTTAAATGATTTTCCg > 1:29073703/1‑67 (MQ=255) agctgGAAAACGCCTCGCAAACAtaaaaaatgatgcgtaaatgagctttctt < 1:28474845‑M1/50‑30 (MQ=255) tCTGGAAAACGCCTCGCAAAAAtaaaaaatgatgcgtaaatgagctttctttaaagattcggcaaggg > 1:15246847‑M1/1‑22 (MQ=255) tCTGGAAAACGCCTCGCAAAAAtaaaaaatgatgcgtaaatgagctttctttaaagattcggcaaggg > 1:10419316‑M1/1‑22 (MQ=255) tCTGGAAAACGCCTCGCAAAAAtaaaaaatgatgcgtaaatgagctttctttaaagattcggcaaggg > 1:11552446‑M1/1‑22 (MQ=255) tCTGGAAAACGCCTCGCAAAAAtaaaaaatgatgcgtaaatgagctttctttaaagattcggcaaggg > 1:30086268‑M1/1‑22 (MQ=255) tCTGGAAAACGCCTCGCAAAAAtaaaaaatgatgcgtaaatgagctttctttaaagattcggcaaggg > 1:23822910‑M1/1‑22 (MQ=255) tCTGGAAAACGCCTCGCAAAAACAAAACAACATGCAAAAATCCGCTTTTTTTAAATGATTTTCCGGCg > 1:2500053/1‑68 (MQ=255) tCTGGAAAACGCCTCGCAAAAACAAAACAACATGCAAAAATCCGCTTTTTTTAAATGATTTTCCGGCg > 1:20528622/1‑68 (MQ=255) cTGGAAAACGCCTCGCAAAAAtaaaaaatgatgcgtaaatgagctttctttaaagattcggcaagggt < 1:32150753‑M1/68‑48 (MQ=255) cTGGAAAACGCCTCGCAAAAAtaaaaaatgatgcgtaaatgagctttctttaaagattcggcaagggt < 1:3418582‑M1/68‑48 (MQ=255) cTGGAAAACGCCTCGCAAAAAtaaaaaatgatgcgtaaatgagctttctttaaagattcggcaagggt > 1:14471184‑M1/1‑21 (MQ=255) cTGGAAAACGCCTCGCAAAAAtaaaaaatgatgcgtaaatgagctttctttaaagattcggcaagggt > 1:26941914‑M1/1‑21 (MQ=255) cTGGAAAACGCCTCGCAAAAAtaaaaaatgatgcgtaaatgagctttctttaaagattcggcaagggt < 1:29606318‑M1/68‑48 (MQ=255) ggAAAACGCCTCGCAAAAAtaaaaaatgatgcgtaaatgagctttctttaaagattcggcaagggtac < 1:654640‑M1/68‑50 (MQ=255) ggAAAACGCCTCGCAAAAAtaaaaaatgatgcgtaaatgagctttctttaaagattcggcaagggt > 1:7145929‑M1/1‑19 (MQ=255) aaaaCGCCTCGCAAAAAtaaaaaatgatgcgtaaatgagctttctttaaagattcggcaagggtactt > 1:4355989‑M1/1‑17 (MQ=255) aaaaCGCCTCGCAAAAAtaaaaaatgatgcgtaaatgagctttctttaaagattcggcaagggtactt > 1:7699901‑M1/1‑17 (MQ=255) aaaaCGCCTCGCAAAAAtaaaaaatgatgcgtaaatgagctttctttaaagattcggcaagggtactt > 1:11887411‑M1/1‑17 (MQ=255) aaaaCGCCTCGCAAAAAtaaaaaatgatgcgtaaatgagctttctttaaagattcggcaagggtactt > 1:14715337‑M1/1‑17 (MQ=255) aaaaCGCCTCGCAAAAAtaaaaaatgatgcgtaaatgagctttctttaaagattcggcaagggtactt > 1:10687346‑M1/1‑17 (MQ=255) aaaaCGCCTCGCAAAAACAAAACAACATGCAAAAATCCGCTTTTTTTAAATGATTTTCCGGCGTAAt < 1:17509467/67‑1 (MQ=255) aaaCGCCTCGCAAAAAtaaaaaatgatgcgtaaatgagctttctttaaagattcggcaagggtacttt < 1:530252‑M1/68‑53 (MQ=255) aaaCGCCTCGCAAAAAtaaaaaatgatgcgtaaatgagctttctttaaagattcggcaagggtacttt > 1:36317075‑M1/1‑16 (MQ=255) aaaCGCCTCGCAAAAAtaaaaaatgatgcgtaaatgagctttctttaaagattcggcaagggtacttt > 1:2262809‑M1/1‑16 (MQ=255) aCGCCTCGCAAAAAtaaaaaatgatgcgtaaatgagctttctttaaagattcggcaagggtacttttc < 1:16915110‑M1/68‑55 (MQ=255) aCGCCTCGCAAAAAtaaaaaatgatgcgtaaatgagctttctttaaagattcggcaagggtacttttc < 1:33439300‑M1/68‑55 (MQ=255) aCGCCTCGCAAAAAtaaaaaatgatgcgtaaatgagctttctttaaagattcggcaagggtacttt > 1:35132726‑M1/1‑14 (MQ=255) aCGCCTCGCAAAAAtaaaaaatgatgcgtaaatgagctttctttaaagattcggcaagggtacttt > 1:37826036‑M1/1‑14 (MQ=255) gCCTCGCAAAAAtaaaaaatgatgcgtaaatgagctttctttaaagattcggcaagggtacttttc > 1:27913543‑M1/1‑12 (MQ=255) gCCTCGCAAAAACAAAACAACATGCAAAAATCCGCTTTTTTTAAATGATTTTCCGGCGTAATTTTCGc > 1:9757250/1‑68 (MQ=255) cTCGCAAAAAtaaaaaatgatgcgtaaatgagctttctttaaagattcggcaagggtacttttctct < 1:25327714‑M1/67‑58 (MQ=255) cTCGCAAAAAtaaaaaatgatgcgtaaatgagctttctttaaagattcggcaagggtacttttctct < 1:23109984‑M1/67‑58 (MQ=255) cTCGCAAAAAtaaaaaatgatgcgtaaatgagctttctttaaagattcggcaagggtacttttctct < 1:17973473‑M1/67‑58 (MQ=255) cTCGCAAAAACAAAACAACATGCAAAAATCCGCTTTTTTTAAATGATTTTCCGGCGTAATTTTCGca < 1:33054076/67‑1 (MQ=255) tCGCAAAAAtaaaaaatgatgcgtaaatgagctttctttaaagattcggcaagggtacttttctctcc < 1:36052075‑M1/68‑60 (MQ=255) tCGCAAAAAtaaaaaatgatgcgtaaatgagctttctttaaagattcggcaagggtacttttctctcc < 1:27412223‑M1/68‑60 (MQ=255) tCGCAAAAACAAAACAACATGCAAAAATCCGC‑TTTTTTAAATGATTTTCCGGCGTAATTTTCGCacat < 1:37125160/68‑1 (MQ=255) cGCAAAAACAAAACAACATGCAAAAATCCGCTTTTTTTAAATGATTTTCCGGCGTAATTTTCGCacat < 1:281595/68‑1 (MQ=255) gCAAAAACAAAACAACATGCAAAAATCCGCTTTTTTTAAATGATTTTCCGGCGTAATTTTCGCacata < 1:6234355/68‑1 (MQ=255) aaaaaCAAAACAACATGCAAAAATCCGCTTTTTTTAAATGATTTTCCGGCGTAATTTTCGCacataca < 1:15726756/68‑1 (MQ=255) aaaaaCAAAACAACATGCAAAAATCCGCTTTTTTTAAATGATTTTCCGGCGTAATTTTCGCacatac < 1:1250392/67‑1 (MQ=255) aaaaaCAAAACAACATGCAAAAATCCGCTTTTTTTAAATGATTTTCCGGCGTAATTTTCGCacatac < 1:9244975/67‑1 (MQ=255) aaaaaCAAAACAACATGCAAAAATCCGCTTTTTTTAAATGATTTTCCGGCGTAATTTTCGCacatac < 1:876153/67‑1 (MQ=255) aaaaaCAAAACAACATGCAAAAATCCGCTTTTTTTAAATGATTTTCCGGCGTAATTTTCGCacatac < 1:8254637/67‑1 (MQ=255) aaaaaCAAAACAACATGCAAAAATCCGCTTTTTTTAAATGATTTTCCGGCGTAATTTTCGCacatac < 1:13589399/67‑1 (MQ=255) aaaaaCAAAACAACATGCAAAAATCCGCTTTTTTTAAATGATTTTCCGGCGTAATTTTCGCacatac < 1:17756639/67‑1 (MQ=255) aaaaaCAAAACAACATGCAAAAATCCGCTTTTTTTAAATGATTTTCCGGCGTAATTTTCGCacatac < 1:4731207/67‑1 (MQ=255) aaaataaaaaatgatgcgtaaatgagctttctttaaagattcggcaagggtacttttctctccataga > 1:38600498‑M1/1‑4 (MQ=255) aaaataaaaaatgatgagtaaatgagctttctttaaagattcggcaagggtacttttctctccataga < 1:13171078‑M1/68‑65 (MQ=255) aaaacaaaacAACATGCAAAAATCCGCTTTTTTTAAATGATTTTCCGGCGTAATTTTCGCacatacat < 1:20925691/68‑1 (MQ=255) aaaacaaaacAACATGCAAAAATCCGCTTTTTTTAAATGATTTTCCGGCGTAATTTTCGCacatacat < 1:21259041/68‑1 (MQ=255) aaacaaaacaACATGCAAAAATCCGCTTTTTTTAAATGATTTTCCGGCGTAATTTTCGCACATACAtt < 1:9458448/68‑1 (MQ=255) aaacaaaacaACATGCAAAAATCCGCTTTTTTTAAATGATTTTCCGGCGTAATTTTCGCACATACAtt < 1:36622334/68‑1 (MQ=255) acaaaacaaCATGCAAAAATCCGCTTTTTTTAAATGATTTTCCGGCGTAATTTTCGCACATACATTaa < 1:22332412/68‑1 (MQ=255) acaaaacaaCATGCAAAAATCCGCTTTTTTTAAATGATTTTCCGGCGTAATTTTCGCACATACATTaa < 1:26342113/68‑1 (MQ=255) acaaaacaaCATGCAAAAATCCGCTTTTTTTAAATGATTTTCCGGCGTAATTTTCGCACATACATTaa < 1:39591951/68‑1 (MQ=255) | ACCATTTTTGAGTAATAAATGAAACAACTGCAACACTCTTATTATTTCTGGAAAACGCCTCGCAAAAACAAAACAACATGCAAAAATCCGCTTTTTTTAAATGATTTTCCGGCGTAATTTTCGCACATACATTAA > CP009273/4072490‑4072624 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |