| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 4248867 | 291 (0.610) | 13 (0.030) | 3/98 | NT | 5.3% | coding (1198/1380 nt) | dinF | oxidative stress resistance protein; putative MATE family efflux pump; UV and mitomycin C inducible protein |
| ? | CP009273 | = 4248885 | 207 (0.500) | coding (1216/1380 nt) | dinF | oxidative stress resistance protein; putative MATE family efflux pump; UV and mitomycin C inducible protein | |||||
GGTGATTTTGCCGGTGGTTGGCGTCTGGTGTTATCTGCTGGACGGCATGTTTATAGGCGCAACGCGTGCCACCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/4248794‑4248867‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccaccgCCATACTGTTACGCATTTCGGTGGCACGCGTTGCGCCTATAAACATGCCGTCCAGCAGATAACACCA < CP009273/4248885‑4248819 gggGATTTTGCCGGTGGCTGGCGTCTGGTGTTATCTGCTGGACGGCATGGTTATAGGCGCAACGCGTG < 1:33969227/65‑1 gGATTTTGCCGGTGGTTGGCGTCTGGTGTTATCTGCTGGACGGCATGTTTATAGGCGCAACGCGTG < 1:5115636/65‑1 TGATTTTGCCGGTGGTTGGCGTCTGGTGTTATCTGCTGGACGGCATGTTTATAGGCGCAACGCGTG < 1:33969210/66‑1 TGATTTTGCCGGTCGTTGGCGTCTGGTGTTATCTACTGGACGGCATGTTTATAGGCGCAACGCGTG < 1:26636482/66‑1 gagTTTGCCGGTGGGTGGCGTCTGGTGTTATCTGCTGGACGGCATGTTTATAGGCGCAACGCGTGCC < 1:33328157/64‑1 GATTTTGCCGTTGGTTGGCGTCTGGTGTTATCTGCTGGACGGCATGTTTATAGGCGCAACGCGTGCC < 1:27292362/67‑1 GATTTTGCCGGTGGTTGGCGTCTTGTGTTATCTGCTGGACGGCATGTTTATAGGCGCAACGCGTGCC < 1:7866547/67‑1 GATTTTGCCGGTGGTTGGCGTCTGGTGTTATCTGCTGGACGGCATGTTTATCGGCGCAACGCGTGCC < 1:5420172/67‑1 GATTTTGCCGGTGGTTGGCGTCTGGTGTTATCTGCTGGACGGCATGTTTATAGGCGCAACGCGTGCC < 1:36890612/67‑1 GATTTTGCCGGTGGTTGGCGTCTGGTGTTATCTGCTGGACGGCATGTTTATAGGCGCAACGCGTGCC < 1:26402455/67‑1 GATTTTGCCGGTGGTTGGCGTCTGGTGTTATCTGCTGGACGGCATGTTTATAGGCGCAACGCGTGCC < 1:26648771/67‑1 GATTTTGCCGGTGGTTGGCGTCTGGTGTTATCTGCTGGACGGCATGTTTATAGGCGCAACGCGTGCC > 1:1152549/1‑67 GATTTTGCCGGTGGTTGGCGTCTGGTGTTATCTGCTGGACGGCATGTTTATAGGCGCAACGCGTGCC < 1:29412843/67‑1 GATTTTGCCGGTGGTTGGCGTCTGGTGTTATCTGCTGGACGGCATGTTTATAGGCGCAACGCGTGCC < 1:36289269/67‑1 GATTTTGCCGGTGGTTGGCGTCTGGTGTTATCTGCTGGACGGCATGTTTATAGGCGCAACGCGTGCC < 1:285691/67‑1 GATTTTGCCGGTGGTTGGCGTCTGGTGTTATCTGCTGGACGGCATGTTTATAGGCGCAACGCGTGCC < 1:3853326/67‑1 GATTTTGCCGGTGGTTGGCGTCTGGTGTTATCTGCTGGACGGCATGTTTATAGGCGCAACGCGTGCC < 1:39186954/67‑1 GATTTTGCCGGTGGTTGGCGTCTGGTGTTATCTGCTGGACGGCATGTTTATAGGCGCAACGCGTGCC > 1:5354702/1‑67 GATTTTGCCGGTGGTTGGCGTCTGGTGTTATCTGCTGGACGGCATGTTTATAGGCGCAACGCGTGCC < 1:7110499/67‑1 GATTTTGCCGGTGGTTGGCGTCTGGTGTTATCTGCTGGACGGCATGTTTATAGGCGCAACGCGTGCC < 1:8711970/67‑1 GATTTTGCCGGTGGTTGGCGTCTGGTGTTATCTGCTGGACGGCATGTTTATAGGCGCAACGCGTGCC < 1:8997717/67‑1 GATTTTGCCGGTGGTTGGCGTCTGGTGTTATCTGCTGGACGGCATGTTTATAGGCGCAACGCGTGCC < 1:11703631/67‑1 GATTTTGCCGGTGGTTGGCGTCTGGTGTTATCTGCTGGACGGCATGTTTATAGGCGCAACGCGTGCC < 1:1385119/67‑1 GATTTTGCCGGTGGTTGGCGTCTGGTGTTATCTGCTGGACGGCATGTTTATAGGCGCAACGCGTGCC < 1:17254358/67‑1 GATTTTGCCGGTGGTTGGCGTCTGGTGTTATCTGCTGGACGGCATGTTTATAGGCGCAACGCGTGCC < 1:18185597/67‑1 GATTTTGCCGGTGGTTGGCGTCTGGTGTTATCTGCTGGACGGCATGTTTATAGGCGCAACGCGTGCC < 1:22109469/67‑1 GATTTTGCCGGTGGTTGGCGTCTGGTGTTATCTGCTGGACGGCATGTTTATAGGCGCAACGCGTGCC < 1:22117016/67‑1 GATTTTGCCGGTGGTTGGCGTCTGGTGTTATCTGCTGGACGGCATGTTTATAGGCGCAACGCGTGCC < 1:19401336/67‑1 GATTTTGCCGGTGGTTGGCGTCTGGGGTTATCTGCTGGACGGCATGTTTATAGGCGCAACGCGTGCC < 1:14534453/67‑1 GATTTTGCCGGTGGTTGGCGTCTCGTGTTATCTGCTGGACGGCATGTTTATAGGCGCAACGCGTGCC < 1:18503536/67‑1 GATTTTGCCGGGGGGTGGCGTCTGGTGTTATCTGCTGGACGGCATGTTTATAGGCGCAACGCGTGCC < 1:23296603/67‑1 TTTTGCCGGTGGTTGGCGTCTGGTGTTATCTGCTGGACGGCATGTTTATAGGCGCAACGCGTGCCAC < 1:6100547/67‑1 TTTTGCCGGTGGTTGGCGTCTGGTGTTATCTGCTGGACGGCATGTTTATAGGCGCAACGCGTGCCAC < 1:31641732/67‑1 TTTGCCGGTGGTTGGCGTCTGGTGTTATCTGCTGGACGGCATGTTTATAGGCGCAACGCGTGCCACCG < 1:15208738/68‑1 CTGCTGGCCGGCATGTTTATAGGCGCAACGCGTGCCACCGCCATTCTGTTTCGCATTTCGGTGGCAC > 1:3203110/1‑67 CTGCTGGACGGCATGTTTATAGGCGCTACGCGTGCCCCCGCCAGGCTGTTACGCATTTCGGTGGgcc > 1:15897387/1‑64 TGGACGGCATGTTTATAGGCGCAACGCGTGCCACCGCCCTACTGTTAGGGATTTCGGTGGCACGCGTT > 1:3399898/1‑68 TGGACGGCATGTTTATAGGCGCAACGCGTGCCACCGCCATACTGTTACGCATTTCGGTGGCACGCGTT > 1:39508106/1‑68 GGCGCAACGCGTGCCCCCGCCATACTGTTGCGCATTTCGGTGGCACGCGTTGCGCCTATAAACATGCC > 1:13569016/1‑68 GGCGCAACGCGTGCCCCCGCCATACTGTTACGCATTTCGGTGGCACGCGTTGCGCCTAGAAACATGCC > 1:28769691/1‑68 GGCGCAACGCGTGCCACCGCCATACTGTTACGCATTTCGGTGGCACGCGTTGCGCCTATAAACATGCC > 1:31006825/1‑68 GGCGCAACGCGTGCCACCGCCATACTGTTACGCATTTCGGTGGCACGCGTTGCGCCTATAAACATGCC > 1:29570734/1‑68 GGCGCAACGCGTGCCACCGCCATACTGTTACGCATTTCGGTGGCACGCGTTGCGCCTATAAACATGCC > 1:22023697/1‑68 GGCGCAACGCGTGCCACCGCCATACTGTTACGCATTTCGGTGGCACGCGTTGCGCCTATAAACATGCC > 1:24552735/1‑68 GGCGCAACGCGTGCCACCGCCATACTGTTACGCATTTCGGTGGCACGCGTTGCGCCTATAAACATGCC > 1:35998220/1‑68 GGCGCAACGCGTGCCACCGCCATACTGTTACGCATTTCGGTGGCACGCGTTGCGCCTATAAACATGCC > 1:25222614/1‑68 GGCGCAACGCGTGCCACCGCCATACTGTTACGCATTTCGGTGGCACGCGTTGCGCCTATAAACATGCC > 1:21922057/1‑68 GCGTGCCACCGCCATACTGTTACGCATTTCGGTGGCACGCGTTGCGCCTATAAACATGCCGTCCAGCA > 1:27946876/1‑68 cctCCGCCATACTGTTACGCATTTCGGTGGCCCGCGTTGCGCCTATAAACATGCCGTCCAGCAGATA > 1:8583226/4‑67 CCACCGCCATACTGTTACGCATTTCGGTGGCACGCGTTGCGCCTATAAACATGCCGTCCAGCAGATA > 1:1923520/1‑67 CCACCGCCATACTGTTACGCATTTCGGTGGCACGCGTTGCGCCTATAAACATGCCGTCCAGCAGATA > 1:20618145/1‑67 ACCGCCATACTGTTACGCATTTCGGTGGCACGCGTTGCGCCTATAAACATGCCGTCCAGCAGATAACA < 1:3850944/68‑1 CCGCCATACTGTTACGCATTTCGGTGGCACGCGTTGCGCCTATAAACATGCCGTCCAGCAGATAACAC < 1:22106948/68‑1 CCGCCATACTGTTACGCATTTCGGTGGCACGCGTTGCGCCTATAAACATGCCGTCCAGCAGATAACA > 1:18493952/1‑67 CGCCATACTGTTACGCATTTCGGTGGCACGCGTTGCGCCTATAAACATGCCGTCCAGCAGATAACACC < 1:22692755/68‑1 CGCCATACTGTTACGCATTTCGGTGGCACGCGTTGCGCC < 1:29638207/39‑1 GCCATACTGTTACGCATTTCGGTGGCACGCGTTGCGCCTATAAACATGCCGTCCAGCAGATAACCCCA > 1:3964966/1‑68 GCCATACTGTTACGCATTTCGGTGGCACGCGTTGCGCCTATAAACATGCCGTCCAGCAGATAACACCA > 1:16727027/1‑68 GCCATACTGTTACGCATTTCGGTGGCACGCGTTGCGCCTATAAACATGCCGTCCAGCAGATAACACCA > 1:24418958/1‑68 GCCATACTGTTACGCATTTCGGTGGCACGCGTTGCGCCTATAAACATGCCGTCCAGCAGATAACACCA > 1:6004354/1‑68 GCCATACTGTTACGCATTTCGGTGGCACGCGTTGCGCCTATAAACATGCCGTCCAGCAGATAACACCA > 1:6374825/1‑68 GCCATACTGTTACGCATTTCGGTGGCACGCGTTGCGCCTATAAACATGCCGTCCAGCAGATAACACCA > 1:8377475/1‑68 GCCATACTGTTACGCATTTCGGTGGCACGCGTTGCGCCTATAAACATGCCGTCCAGCAGATAACACCA > 1:19752413/1‑68 GCCATACTGTTACGCATTTCGGTGGCACGCGTTGCGCCTATAAACATGCCGTCCAGCAGATAACACCA > 1:13140441/1‑68 GGTGATTTTGCCGGTGGTTGGCGTCTGGTGTTATCTGCTGGACGGCATGTTTATAGGCGCAACGCGTGCCACCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/4248794‑4248867‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccaccgCCATACTGTTACGCATTTCGGTGGCACGCGTTGCGCCTATAAACATGCCGTCCAGCAGATAACACCA < CP009273/4248885‑4248819 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |