BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 4386424	257 (0.540)	13 (0.030)	5/96	NT	5.8%	coding (543/1338 nt)	amiB	N‑acetylmuramoyl‑l‑alanine amidase II
*	?	CP009273	= 4386471	204 (0.500)	13 (0.030)	5/96	NT	5.8%	coding (590/1338 nt)	amiB	N‑acetylmuramoyl‑l‑alanine amidase II

Only 100 of 146 total aligned reads displayed.

GCGCAATCCGTTTAAAACGGAAAGTAACCGCACTACGGGTGTTATCAGCAGTAATACGGTAACGCGTCCGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/4386352‑4386424

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtccggcaTCAATAGCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTTACCGTAT  <  CP009273/4386471‑4386405

GCGCAATCCGTTTAAAACGGAAAGTAACCGCACTACGGGTGTTATCAGCAGTAATACGGTAACGCGT                                                                           <  1:16724675/67‑1

GCGCAATCCGTTTAAAACGGAAAGTAACCGCACTACGGGTGTTATCAGCAGTAATACGGTAACGCGT                                                                           >  1:25711768/1‑67

     ATCCGTTTAAAACGGAAAGTAACCGCACTACGGGTGTTATCAGCAGTAATACGGTAACGCGTCCGGCA                                                                     >  1:5981069/1‑68

                          ACCGCACTACGGGTGTTATCAGCAGTAATACGGTAACGTGTCCGGCATCAATAGCGATGATATTTTTA                                                >  1:21323622/1‑68

                          ACCGCACTACGGGTGTTATCAGCAGTAATACGGTAACGCGTCCGGCATCAATAGCGATGATAATTTTA                                                >  1:896498/1‑68

                               ACTACGGGTGTTATCAGCAGTAATACGGTAACGCGGCCGGCATCAATAGCGATGCGAATTTTATCGC                                            >  1:18047691/1‑67

                                                  GTAATACGGTAACGCGTCCGGCATCAATAGCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGC                        >  1:39409162/1‑68

                                                         GGTAACGCGTCCGGCATCAATAGCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCG                 >  1:11648848/1‑68

                                                         GGTAACGCGTCCGGCATCAATAGCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCG                 >  1:33390470/1‑68

                                                         GGTAACGCGTCCGGCATCAATAGCGATGATAATTTTATCGCCAGAGGTAGCCGTCTCGCGCGCTGCCG                 >  1:11691795/1‑68

                                                         GGTAACGCGTCCGGCATCAATAGCGATGAGAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCGGCCG                 >  1:33104125/1‑68

                                                               GCGTCCGGCATCAATAGCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCG           >  1:19300016/1‑68

                                                                 ggCCGGCATCAATATCGCTTCATATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTT         <  1:5467916/66‑1

                                                                 GTCCGGCATCAATAGCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTT         <  1:10132969/68‑1

                                                                 GTCCGGCATCAATAGCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTT         <  1:22971600/68‑1

                                                                 GTCCGGCATCAATAGCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTT         <  1:34968957/68‑1

                                                                 GTCCGGCATCAATAGCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTT         <  1:35370098/68‑1

                                                                 GTCCGGCATCAATAGCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTT         <  1:2372342/68‑1

                                                                 GTCCGGCATCAATAGCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTT         <  1:29903035/68‑1

                                                                 GTCCGGCATCAATAGCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTT         <  1:2881433/68‑1

                                                                 GTCCGGCATCAATAGCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTT         <  1:13280698/68‑1

                                                                 GTCCGGCATCAATAGCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGT          <  1:38841245/67‑1

                                                                 GTCCGGCATCAATAGCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGT          <  1:414093/67‑1

                                                                   CCGGCATCAATAGCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTTAC       <  1:37561317/68‑1

                                                                   CCGGCATCAATAGCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTTAC       <  1:16102469/68‑1

                                                                   CCGGCATCAATAGCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTTAC       <  1:6842098/68‑1

                                                                   CCGGCATCAATAGCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTTAC       <  1:22153448/68‑1

                                                                    CGGCATCAATAGCTATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTTACC      <  1:33058573/68‑1

                                                                    CGGCATCAATAGCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTTACC      <  1:9499826/68‑1

                                                                    CGGCATCAATAGCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTTACC      <  1:28953735/68‑1

                                                                    CGGCATCAATAGCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTTACC      <  1:854952/68‑1

                                                                    CGGCATCAATAGCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTTACC      <  1:81056/68‑1

                                                                    CGGCATCAATAGCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTTACC      <  1:30159208/68‑1

                                                                    CGGCATCAATAGCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTTACC      <  1:8012922/68‑1

                                                                    CGGCATCAATAGCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTTACC      <  1:30175092/68‑1

                                                                    CGGCATCAATAGCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTTACC      <  1:30576103/68‑1

                                                                    CGGCATCAATAGCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTTACC      <  1:30750366/68‑1

                                                                    CGGCATCAATAGCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTTACC      <  1:3207918/68‑1

                                                                    CGGCATCAATAGCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTTACC      <  1:32159477/68‑1

                                                                    CGGCATCAATAGCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTTACC      <  1:6485707/68‑1

                                                                    CGGCATCAATAGCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTTACC      <  1:4514316/68‑1

                                                                    CGGCATCAATAGCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTTACC      <  1:4137277/68‑1

                                                                    CGGCATCAATAGCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTTACC      <  1:36910098/68‑1

                                                                    CGGCATCAATAGCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTTACC      <  1:37862418/68‑1

                                                                    CGGCATCAATAGCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTTACC      <  1:39288451/68‑1

                                                                    CGGCATCAATAGCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTTACC      <  1:3883090/68‑1

                                                                    CGGCATCAATAGCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTTACC      <  1:14255383/68‑1

                                                                    CGGCATCAATAGCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTTACC      <  1:18163804/68‑1

                                                                    CGGCATCAATAGCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTTACC      <  1:16437601/68‑1

                                                                    CGGCATCAATAGCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTTACC      <  1:16286781/68‑1

                                                                    CGGCATCAATAGCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTTACC      <  1:15581324/68‑1

                                                                    CGGCATCAATAGCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTTACC      <  1:16505937/68‑1

                                                                    CGGCATCAATAGCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTTACC      <  1:16893268/68‑1

                                                                    CGGCATCAATAGCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTTACC      <  1:2080454/68‑1

                                                                    CGGCATCAATAGCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTTACC      <  1:20922185/68‑1

                                                                    CGGCATCAATAGCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTTACC      <  1:17125945/68‑1

                                                                    CGGCATCAATAGCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTTACC      <  1:12671971/68‑1

                                                                    CGGCATCAATAGCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTTACC      <  1:12232369/68‑1

                                                                    CGGCATCAATAGCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTTACC      <  1:23356778/68‑1

                                                                    CGGCATCAATAGCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTTACC      <  1:25545018/68‑1

                                                                    CGGCATCAATAGCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTTACC      <  1:12152030/68‑1

                                                                    CGGCATCAATAGCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTTACC      <  1:27471756/68‑1

                                                                    CGGCATCAATAGCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTTACC      <  1:2822730/68‑1

                                                                    CGGCATCAATAGCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTTACC      <  1:18066376/68‑1

                                                                    CGGCATCAATAGCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTTAC       <  1:5968142/67‑1

                                                                    CGGCATCAATAGCGATGATAATTTTATCGCCAGTGTCAGCCGTCGCGCGCGCTGCCGGACGCGTTACC      <  1:32523708/68‑1

                                                                    CGGCATCAATACCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTTACC      <  1:6571907/68‑1

                                                                     GGCATCAATAGCGATGATAATTTTATCGCCTGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTTACCG     <  1:33983219/68‑1

                                                                     GGCATCAATAGCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTTACCG     <  1:18159564/68‑1

                                                                     GGCATCAATAGCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTTACCG     <  1:7085873/68‑1

                                                                       CATCAATAGCGCTGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTTCCCGT    <  1:28321294/67‑1

                                                                       CATCAATAGCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTTACCGT    <  1:15045441/67‑1

                                                                       CATCAATAGCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTTACCGT    <  1:14550274/67‑1

                                                                       CATCAATAGCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTTACCGT    <  1:10518018/67‑1

                                                                       CATCAATAGCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTTACCGT    <  1:27884798/67‑1

                                                                       CATCAATAGCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTTACCGT    <  1:35979216/67‑1

                                                                       CATCAATAGCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTTACCGT    <  1:35880179/67‑1

                                                                       CATCAATAGCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTTACCGT    <  1:35776345/67‑1

                                                                       CATCAATAGCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTTACCGT    <  1:3540372/67‑1

                                                                       CATCAATAGCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTTACCGT    <  1:18622444/67‑1

                                                                       CATCAATAGCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTTACCGT    <  1:25776015/67‑1

                                                                       CATCAATAGCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTTACCGT    <  1:36675472/67‑1

                                                                       CATCAATAGCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTTACCGT    <  1:33301398/67‑1

                                                                        ATCAATAGCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGGTGCCGGACGCGTTACCGTA   <  1:22171474/67‑1

                                                                        ATCAATAGCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTTACCGTAT  >  1:16198078/1‑68

                                                                        ATCAATAGCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTTACCGTA   <  1:5928072/67‑1

                                                                        ATCAATAGCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTTACCGTA   <  1:9471651/67‑1

                                                                        ATCAATAGCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTTACCGTA   <  1:10782139/67‑1

                                                                        ATCAATAGCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTTACCGTA   <  1:22976206/67‑1

                                                                        ATCAATAGCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTTACCGTA   <  1:21475026/67‑1

                                                                        ATCAATAGCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTTACCGTA   <  1:14262601/67‑1

                                                                        ATCAATAGCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTTACCGTA   <  1:18942753/67‑1

                                                                        ATCAATAGCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTTACCGTA   <  1:3402928/67‑1

                                                                        ATCAATAGCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTTACCGTA   <  1:34880209/67‑1

                                                                        ATCAATAGCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTTACCGTA   <  1:38158778/67‑1

                                                                        ATCAATAGCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTTACCGTA   <  1:18056649/67‑1

                                                                        ATCAATAGCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTTACCGTA   <  1:36987698/67‑1

                                                                        ATCAATAGCGATGATAATTTTATCGCCAGTGGTAGCCGTCGCGCGCGCTGCCGGACGCGTTACCGTA   <  1:19450517/67‑1

                                                                        ATCAATAGCGATGATAATATTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACCCGTTACCCTAT  >  1:33365883/1‑68

                                                                        ATCAAAAGCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTTACCGTA   <  1:32335489/67‑1

GCGCAATCCGTTTAAAACGGAAAGTAACCGCACTACGGGTGTTATCAGCAGTAATACGGTAACGCGTCCGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/4386352‑4386424

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtccggcaTCAATAGCGATGATAATTTTATCGCCAGTGTTAGCCGTCGCGCGCGCTGCCGGACGCGTTACCGTAT  <  CP009273/4386471‑4386405

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.