| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 4386424 | 257 (0.540) | 13 (0.030) | 5/96 | NT | 5.8% | coding (543/1338 nt) | amiB | N‑acetylmuramoyl‑l‑alanine amidase II |
| ? | CP009273 | = 4386471 | 204 (0.500) | coding (590/1338 nt) | amiB | N‑acetylmuramoyl‑l‑alanine amidase II | |||||
Only 100 of 575 total aligned reads displayed.
ATCCGTTTAAAACGGAAAGTAACCGCACTACGGGTGTTATCAGCAGTAATACGGTAACGCGTCCGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTATTGATGCCGGACACGGCGGTCAGG > CP009273/4386357‑4386491 | aTCCGTTTAAAACGGAAAGTAACCGCACTACGGGTGTTATCAGCAGTAATACGGTAACGCGTCCGGCA > 1:5981069‑M1/1‑68 (MQ=255) ggAAAGTAACCGCACTACGGGTGTTATCAGCAGTAATACGGTAACGCGTCCGGCAGCGCGCGCGACgg < 1:27978870/68‑1 (MQ=255) aGTAACCGCACTACGGGTGTTATCAGCAGTAATACGGTAACGCGTCCGGCAGCGCGCGCGACGGCTa > 1:24539047/1‑67 (MQ=255) aCCGCACTACGGGTGTTATCAGCTGTAATACGGTAACGCGTCCGGCAGCGCGCGCGACGGCTAac > 1:10025339/1‑65 (MQ=255) cACTACGGGTGTTATCAGCAGTAATACGGTAACGCGTCCGGCAGCGCGCGCGACGGCTAACACTGGCg > 1:5842448/1‑68 (MQ=255) cACTACGGGTGTTATCAGCAGTAATACGGTAACGCGTCCGGCAGCGCGCGCGACGGCTAACACTGGCg > 1:20072319/1‑68 (MQ=255) cACTACGGGTGTTATCAGCAGTAATACGGTAACGCGTCCGGCAGCGCGCGCGACGGCTAACACTGGCg > 1:33742246/1‑68 (MQ=255) cACTACGGGTGTTATCAGCAGTAATACGGTAACGCGTCCGGCAGCGCGCGCGACGGCTAACACTGGCg > 1:38771918/1‑68 (MQ=255) aCTACGGGTGTTATCAGCAGTAATACGGTAACGCGTCCGGCAGCGCGCGCGACGGCTAACACTGGCGa > 1:4561184/1‑68 (MQ=255) aCTACGGGTGTTATCAGCAGTAATACGGTAACGCGTCCGGCAGCGCGCGCGACGGCTAACACTGGCGa > 1:4456284/1‑68 (MQ=255) aCGGGTGTTATCAGCAGTAATACGGTAACGCGTCCGGCAGCGCGCGCGACGGCTAACACTGGCGATaa > 1:11738526/1‑68 (MQ=255) aCGGGTGTTATCAGCAGTAATACGGTAACGCGTCCGGCAGCGCGCGCGACGGCTAACACTGGCGATaa > 1:5461346/1‑68 (MQ=255) aCGGGTGTTATCAGCAGTAATACGGTAACGCGTCCGGCAGCGCGCGCGACGGCTAACACTGGCGATaa > 1:29395343/1‑68 (MQ=255) gggTGTTATCAGCAGTAATACGGTAACGCGTCCGGCAGCGCGCGCGACGGCTAACACTGGCGATaaaa < 1:23429377/68‑1 (MQ=255) ggTGTTATCGGCAGTAATACGGTAACGCGTCCGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAAt > 1:13280609/1‑68 (MQ=255) ggTGTTATCAGCAGTAATACGGTAACGCGTCCGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAAt > 1:36147761/1‑68 (MQ=255) ggTGTTATCAGCAGTAATACGGTAACGCGTCCGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAAt > 1:23726506/1‑68 (MQ=255) ggTGTTATCAGCAGTAATACGGTAACGCGTCCGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAAt > 1:20617638/1‑68 (MQ=255) ggTGTTATCAGCAGTAATACGGTAACGCGTCCGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAAt > 1:15931182/1‑68 (MQ=255) ggTGTTATCAGCAGTAATACGGTAACGCGTCCGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAAt > 1:15270222/1‑68 (MQ=255) ggTGTTATCAGCAGTAATACGGTAACGCGTCCGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAAt > 1:32098944/1‑68 (MQ=255) ggTGTTATCAGCAGTAATACGGTAACGCGTCCGGCAGCGCGCGCGACGGCTAACACTGGCCATAAAAt > 1:29193711/1‑68 (MQ=255) ggTGTTATCAGCAGTAATACGGTAACGCGTCCGGCAGCGCGCGCGACGGCTAACACTGCCGATAAAAt > 1:28854430/1‑68 (MQ=255) ttATCAGCAGTAATACGGTAACGCGTCCGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTatc > 1:21716463/1‑68 (MQ=255) tCAGCAGTAATACGGTAACGCGTCCGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTatcatc > 1:14539699/1‑68 (MQ=255) gcagTAATACGGTAACGCGTCCGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCt > 1:10385079/1‑68 (MQ=255) gcagTAATACGGTAACGCGTCCGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCt > 1:2265338/1‑68 (MQ=255) gcagTAATACGGTAACGCGTCCGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCt > 1:36570270/1‑68 (MQ=255) gcagTAATACGGTAACGCGTCCGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCt > 1:39055616/1‑68 (MQ=255) agTAATACGGTAACGCGTCCGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGc < 1:31628605/65‑1 (MQ=255) agTAATACGGTAACGCGTCCGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCt < 1:14013953/66‑1 (MQ=255) agTAATACGGTAACGCGTCCGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTAt > 1:34180258/1‑68 (MQ=255) gTAATACGGTAACGCGTCCGGCAtcaatagcgatgataattttatcgccagtgttagccgtcgcgcgc > 1:39409162‑M1/1‑23 (MQ=255) aaTACGGTAACGCGTCCGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTATTGa > 1:34619624/1‑68 (MQ=255) aTACGGTAACGCGTCCGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTATTGAt > 1:16198078‑M2/1‑67 (MQ=255) taaggTAACGCGTCCGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTATTGAt > 1:26416567/4‑67 (MQ=255) tACGGTAACGCGTCCGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTATTGAt < 1:21475026‑M2/67‑2 (MQ=255) tACGGTAACGCGTCCGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTATTGAt < 1:18942753‑M2/67‑2 (MQ=255) tACGGTAACGCGTCCGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTATTGAt < 1:34880209‑M2/67‑2 (MQ=255) tACGGTAACGCGTCCGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTATTGAt < 1:36987698‑M2/67‑2 (MQ=255) tACGGTAACGCGTCCGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTATTGAt < 1:38158778‑M2/67‑2 (MQ=255) tACGGTAACGCGTCCGGCACCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTATTGAt < 1:22171474‑M2/67‑2 (MQ=255) aCGGTAACGCGTCCGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTATTGAtg < 1:3540372‑M2/67‑3 (MQ=255) aCGGTAACGCGTCCGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTATTGAtg < 1:35776345‑M2/67‑3 (MQ=255) aCGGTAACGCGTCCGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTATTGAtg < 1:9689838‑M2/67‑3 (MQ=255) aCGGTAACGCGTCCGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTATTGAtg < 1:11440417‑M2/67‑3 (MQ=255) aCGGTAACGCGTCCGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTATTGAtg < 1:25776015‑M2/67‑3 (MQ=255) cGGTAACGCGTCCGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTATTGAtgcc < 1:7085873‑M2/68‑5 (MQ=255) ggTAACGCGTCCGGCAtcaatagcgatgataattttatcgccagtgttagccgtcgcgcgcgctgccg > 1:33390470‑M1/1‑16 (MQ=255) ggTAACGCGTCCGGCAGCGCGCGCGACGGCTGACACTGGCGATAAAATTATCATCGCTATTGAtgccg < 1:32523708‑M2/68‑6 (MQ=255) ggTAACGCGTCCGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTATTGAtgccg < 1:753964‑M2/68‑6 (MQ=255) ggTAACGCGTCCGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTATTGAtgccg < 1:25545018‑M2/68‑6 (MQ=255) ggTAACGCGTCCGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTATTGAtgccg < 1:16505937‑M2/68‑6 (MQ=255) ggTAACGCGTCCGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTATTGAtgccg < 1:17125945‑M2/68‑6 (MQ=255) ggTAACGCGTCCGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTATTGAtgccg < 1:18066376‑M2/68‑6 (MQ=255) ggTAACGCGTCCGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTATTGAtgccg < 1:30750366‑M2/68‑6 (MQ=255) ggTAACGCGTCCGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTATTGAtgccg < 1:30982570‑M2/68‑6 (MQ=255) ggTAACGCGTCCGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTATTGAtgccg < 1:854952‑M2/68‑6 (MQ=255) gTAACGCGTCCGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTATTGAtgccgg < 1:18466002‑M2/68‑7 (MQ=255) gTAACGCGTCCGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTATTGAtgccgg < 1:37561317‑M2/68‑7 (MQ=255) gTAACGCGTCCGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTATTGAtgccgg < 1:28169568‑M2/68‑7 (MQ=255) tAACGCGTCCGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTATTGAtgccgg < 1:26469950‑M2/67‑7 (MQ=255) aaCGCGTCCGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTATTGAtgccggac < 1:16837748‑M2/68‑9 (MQ=255) cgcgTCCGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTATTGATGCCGGacac > 1:14286213/1‑68 (MQ=255) cgcgTCCGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTATTGATGCCGGacac > 1:12948883/1‑68 (MQ=255) gcgTCCGGCAtcaatagcgatgataattttatcgccagtgttagccgtcgcgcgcgctgccggacgcg > 1:19300016‑M1/1‑10 (MQ=255) gcgTCCGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTATTGATGCCGGACAcg > 1:27789685/1‑68 (MQ=255) gcgTCCGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTATTGATGCCGGACAcg > 1:33534941/1‑68 (MQ=255) gTCCGGCAtcaatagcgatgataattttatcgccagtgttagccgtcgcgcgcgctgccggacgcgt < 1:414093‑M1/67‑60 (MQ=255) gTCCGGCAtcaatagcgatgataattttatcgccagtgttagccggcgcgcgcgctgccggacgcgtt < 1:33161135‑M1/68‑61 (MQ=255) gTCCGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTATTGATGCCGGACAcggc > 1:25180029/1‑68 (MQ=255) ccGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTATTGATGCCGGACAcggcgg < 1:9033252/68‑1 (MQ=255) ccGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTATTGATGCCGGACAcggcgg < 1:21155396/68‑1 (MQ=255) ccGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTATTGATGCCGGACAcggcgg > 1:17503983/1‑68 (MQ=255) ccGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTATTGATGCCGGACAcggcgg < 1:35319119/68‑1 (MQ=255) ccGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTATTGATGCCGGACAcggcgg < 1:12639115/68‑1 (MQ=255) cGGCAtcaatagcgatgataattttatcgccagtgttagccgtcgcgcgcgctgccggacgcgttacc < 1:28575860‑M1/68‑64 (MQ=255) cGGCAtcaatagcgatgataattttatcgccagtgttagccgtcgcgcgcgctgccggacgcgttacc < 1:6744410‑M1/68‑64 (MQ=255) cGGCAtcaatagcgatgataattttatcgccagtgttagccgtcgcgcgcgctgccggacgcgttacc < 1:12152030‑M1/68‑64 (MQ=255) cGGCAtcaatagcgatgataattttatcgccagtgttagccgtcgcgcgcgctgccggacgcgttacc < 1:6485707‑M1/68‑64 (MQ=255) cGGCAtcaatagcgatgataattttatcgccagtgttagccgtcgcgcgcgctgccggacgcgttacc < 1:20922185‑M1/68‑64 (MQ=255) cGGCAtcaatagcgatgataattttatcgccagtgttagccgtcgcgcgcgctgccggacgcgttacc < 1:16437601‑M1/68‑64 (MQ=255) cGGCAtcaatagcgatgataattttatcgccagtgttagccgtcgcgcgcgctgccggacgcgttacc < 1:32320237‑M1/68‑64 (MQ=255) cGGCAtcaatagcgatgataattttatcgccagtgttagccgtcgcgcgcgctgccggacgcgttacc < 1:35891275‑M1/68‑64 (MQ=255) cGGCAtcaatagcgatgataattttatcgccagtgttagccgtcgcgcgcgctgccggacgcgttacc < 1:8012922‑M1/68‑64 (MQ=255) cGGCAtcaatagcgatgataattttatcgccagtgttagccgtcgcgcgcgctgccggacgcgttacc < 1:30159208‑M1/68‑64 (MQ=255) cGGCAtcaatagcgatgataattttatcgccagtgttagccgtcgcgcgcgctgccggacgcgttacc < 1:30449777‑M1/68‑64 (MQ=255) cGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTATTGAtgccggacgcgttacc > 1:15639138‑M2/1‑52 (MQ=255) cGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTATTGATGCCGGACACGGCGGt < 1:27327345/68‑1 (MQ=255) cGGCAGCGCGCGAGACGGCTACCTCTGGCGATAAAATTATCATCGCTATTGAtgccggacgcgttacc > 1:11691795‑M2/1‑52 (MQ=255) ggCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTATTGATGCCGGACACGGCGGTc > 1:8309184/1‑68 (MQ=255) gCAtcaatagcgatgataattttatcgccagtgttagccgtcgcgcgcgctgccggacgcgttaccgt > 1:32959897‑M1/1‑3 (MQ=255) cAtcaatagcgatgataattttatcgccagtgttagccgtcgcgcgcgctgccggacgcgttaccgt < 1:15045441‑M1/67‑66 (MQ=255) atcaatagcgatgataattttatcgccagtgttagccgtcgcgcgcgctgccggacgcgttaccgta < 1:5678798‑M1/67‑67 (MQ=255) atcaatagcgatgataattttatcgccagtgttagccgtcgcgcgcgctgccggacgcgttaccgta < 1:36857506‑M1/67‑67 (MQ=255) atcaatagcgatgataattttatcgccagtgttagccgtcgcgcgcgctgccggacgcgttaccgta < 1:18056649‑M1/67‑67 (MQ=255) atcaatagcgatgataattttatcgccagtgttagccgtcgcgcgcgctgccggacgcgttaccgta < 1:22976206‑M1/67‑67 (MQ=255) atcaatagcgatgataattttatcgccagtgttagccgtcgcgcgcgctgccggacgcgttaccgta < 1:9471651‑M1/67‑67 (MQ=255) atcaatagcgatgataattttatcgccagtgttagccgtcgcgcgcgctgccggacgcgttaccgta < 1:10782139‑M1/67‑67 (MQ=255) aGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTATTGATGCCGGACACGGCGGTCAgg > 1:13690731/1‑68 (MQ=255) | ATCCGTTTAAAACGGAAAGTAACCGCACTACGGGTGTTATCAGCAGTAATACGGTAACGCGTCCGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTATTGATGCCGGACACGGCGGTCAGG > CP009273/4386357‑4386491 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |