| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 4386424 | 257 (0.540) | 13 (0.030) | 5/96 | NT | 5.8% | coding (543/1338 nt) | amiB | N‑acetylmuramoyl‑l‑alanine amidase II |
| ? | CP009273 | = 4386471 | 204 (0.500) | coding (590/1338 nt) | amiB | N‑acetylmuramoyl‑l‑alanine amidase II | |||||
Only 100 of 431 total aligned reads displayed.
AATACGGTAACGCGTCCGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTATTGATGCCGGACACGGCGGTCAGGACCCTGGCGCTATCGGCCCCGGTGGTACGCGGGAGAAAAATGTCACC > CP009273/4386404‑4386538 | aaTACGGTAACGCGTCCGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTATTGa > 1:11479486/1‑68 (MQ=255)aaTACGGTAACGCGTCCGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTATTGa > 1:9001449/1‑68 (MQ=255) aTACGGTAACGCGTCCGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTATTGAt > 1:16198078‑M2/1‑67 (MQ=255) taaggTAACGCGTCCGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTATTGAt > 1:26416567/4‑67 (MQ=255) tACGGTAACGCGTCCGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTATTGAt < 1:38158778‑M2/67‑2 (MQ=255) tACGGTAACGCGTCCGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTATTGAt < 1:36857506‑M2/67‑2 (MQ=255) tACGGTAACGCGTCCGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTATTGAt < 1:18942753‑M2/67‑2 (MQ=255) aCGGTAACGCGTCCGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTATTGAtg < 1:18622444‑M2/67‑3 (MQ=255) aCGGTAACGCGTCCGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTATTGAtg < 1:33301398‑M2/67‑3 (MQ=255) aCGGTAACGCGTCCGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTATTGAtg < 1:34267234‑M2/67‑3 (MQ=255) aCGGTAACGCGTCCGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTATTGAtg < 1:6419162‑M2/67‑3 (MQ=255) aCGGTAACGCGTCCGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTATTGAtg < 1:27884798‑M2/67‑3 (MQ=255) cGGTAACGCGTCCGGCAGCGCGCGCGACGGCTAACACAGGCGATAAAATTATCATCGCTATTGAtgcc < 1:33983219‑M2/68‑5 (MQ=255) ggTAACGCGTCCGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTATTGAtgccg < 1:18066376‑M2/68‑6 (MQ=255) ggTAACGCGTCCGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTATTGAtgccg < 1:30576103‑M2/68‑6 (MQ=255) ggTAACGCGTCCGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTATTGAtgccg < 1:23356778‑M2/68‑6 (MQ=255) ggTAACGCGTCCGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTATTGAtgccg < 1:81056‑M2/68‑6 (MQ=255) ggTAACGCGTCCGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTATTGAtgccg < 1:2822730‑M2/68‑6 (MQ=255) ggTAACGCGTCCGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTATTGAtgccg < 1:16893268‑M2/68‑6 (MQ=255) ggTAACGCGTCCGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTATTGAtgccg < 1:753964‑M2/68‑6 (MQ=255) ggTAACGCGTCCGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTATTGAtgccg < 1:30982570‑M2/68‑6 (MQ=255) ggTAACGCGTCCGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTATTGAtgccg < 1:4476251‑M2/68‑6 (MQ=255) ggTAACGCGTCCGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTATTGAtgccg < 1:3883090‑M2/68‑6 (MQ=255) ggTAACGCGTCCGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTATTGAtgccg < 1:12232369‑M2/68‑6 (MQ=255) ggTAACGCGTCCGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTATTGAtgccg < 1:9499826‑M2/68‑6 (MQ=255) ggTAACGCGTCCGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTATTGAtgccg < 1:35891275‑M2/68‑6 (MQ=255) ggTAACGCGTCCGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTATTGAtgccg < 1:14255383‑M2/68‑6 (MQ=255) gTAACGCGTCCGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTATTGAtgccgg < 1:16469406‑M2/68‑7 (MQ=255) gTAACGCGTCCGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTATTGAtgccg < 1:5968142‑M2/67‑6 (MQ=255) aaCGCGTCCGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTATTGAtgccggac < 1:35370098‑M2/68‑9 (MQ=255) aaCGCGTCCGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTATTGAtgccggac < 1:2881433‑M2/68‑9 (MQ=255) aaCGCGTCCGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTATTGAtgccggac < 1:29903035‑M2/68‑9 (MQ=255) aaCGCGTCCGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTATTGAtgccggac < 1:2372342‑M2/68‑9 (MQ=255) cgcgTCCGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTATTGATGCCGGacac > 1:29486399/1‑68 (MQ=255) cgcgTCCGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTATTGATGCCGGacac > 1:17581207/1‑68 (MQ=255) cgcgTCCGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTATTGATGCCGGacac > 1:25395126/1‑68 (MQ=255) cgcgTCCGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTATTGATGCCGGacac > 1:5631851/1‑68 (MQ=255) gcgTCCGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTATTGATGCCGGACAcg < 1:2593963/68‑1 (MQ=255) gcgTCCGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTATTGATGCCGGACAcg > 1:17373381/1‑68 (MQ=255) gcgTCCGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTATTGATGCCGGACAcg > 1:20389518/1‑68 (MQ=255) gTCCGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTATTGATGCCGGACAcggc > 1:4009059/1‑68 (MQ=255) gTCCGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTATTGATGCCGGACAcggc < 1:11935624/68‑1 (MQ=255) ccGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTATTGATGCCGGACAcggcgg < 1:21155396/68‑1 (MQ=255) ccGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTATTGATGCCGGACAcggcgg < 1:37695923/68‑1 (MQ=255) ccGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTATTGATGCCGGACAcggcgg < 1:37094827/68‑1 (MQ=255) ggCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTATTGATGCCGGACACGGCGGTc > 1:35658556/1‑68 (MQ=255) cAGCGCGCGCGACGGCTAACACTGGCGATAAAATAATCATCGCTATTGAtgccggacgcgttaccgt > 1:39182309‑M2/1‑49 (MQ=255) aGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTATTGATGCCGGACACGGCGGTCAg > 1:11724398/1‑67 (MQ=255) gcgcgcgACGGCTAACACTGGCGATAAAATTATCATCGCTATTGATGCCGGACACGGCGGTCAGGAcc < 1:35019311/68‑1 (MQ=255) gcgcgcgACGGCTAACACTGGCGATAAAATTATCATCGCTATTGATGCCGGACACGGCGGTCAGGAc < 1:14056481/67‑1 (MQ=255) cgcgcgACGGCTAACACTGGCGATAAAATTATCATCGCTATTGATGCCGGACACGGCGGTCAGGAc > 1:12769265/1‑66 (MQ=255) gcgACGGCTAACACTGGCGATAAAATTATCATCGCTATTGATGCCGGACACGGCGGTCAGGACCCTg > 1:32652405/1‑67 (MQ=255) aCGGCTAACACTGGCGATAAAATTATCATCGCTATTGATGCCGGACACGGCGGTCAGGACCCTGgc > 1:24941975/1‑66 (MQ=255) gCTAACACTGGCGATAAAATTATCATCGCTATTGATGCCGGACACGGCGGTCAGGACCCTGGCGCTa > 1:14982241/1‑67 (MQ=255) tAACACTGGCGATAAAATTATCATCGCTATTGATGCCGGACACGGCGGTCAGGACCCTGGCGCTATCg > 1:27614782/1‑68 (MQ=255) tAACACTGGCGATAAAATTATCATCGCTATCGATGCCGGACACGGCGGTCAGGACCCTGGCGCTATCg < 1:10056157/68‑1 (MQ=255) acacTGGCGATAAAATTATCATCGCTATTGATGCCGGACACGGCGGTCAGGACCCTGGCGCTATCgg > 1:36682757/1‑67 (MQ=255) acacTGGCGATAAAATTATCATCGCTATTGATGCCGGACACGGCGGTCAGGACCCTGGCGCTATCgg > 1:38969728/1‑67 (MQ=255) acacTGGCGATAAAATTATCATCGCTATTGATGCCGGACACGGCGGTCAGGACCCTGGCGCTATCgg > 1:33467385/1‑67 (MQ=255) acacTGGCGATAAAATTATCATCGCTATTGATGCCGGACACGGCGGTCAGGACCCTGGCGCTATCGGc < 1:20917097/68‑1 (MQ=255) acTGGCGATAAAATTATCATCGCTATTGATGCCGGACACGGCGGTCAGGACCCTGGCGCTATCGGcc > 1:30039822/1‑67 (MQ=255) acTGGCGATAAAATTATCATCGCTATTGATGCCGGACACGGCGGTCAGGACCCTGGCGCTATCGGcc > 1:2686352/1‑67 (MQ=255) acTGGCGATAAAATTATCATCGCTATTGATGCCGGACACGGCGGTCAGGACCCTGGCGCTATCGGcc > 1:12907629/1‑67 (MQ=255) acTGGCGATAAAATTATCATCGCTATTGATGCCGGACACGGCGGTCAGGACCCTGGCGCTATCGGcc > 1:6768028/1‑67 (MQ=255) acTGGCGATAAAATTATCATCGCTATTGATGCCGGACACGGCGGTCAGGACCCTGGCGCTATCGGcc > 1:8320095/1‑67 (MQ=255) acTGGCGATAAAATTATCATCGCTATTGATGCCGGACACGGCGGTCAGGACCCTGGCGCTATCGGcc > 1:14561611/1‑67 (MQ=255) acTGGCGATAAAATTATCATCGCTATTGATGCCGGACACGGCGGTCAGGACCCTGGCGCTATCGGcc > 1:32215073/1‑67 (MQ=255) cTGGCGATAAAATTATCATCGCTATTGATGCCGGACACGGCGGTCAGGACCCTGGCGCTATCGGcccc > 1:14396842/1‑68 (MQ=255) cTGGCGATAAAATTATCATCGCTATTGATGCCGGACACGGCGGTCAGGACCCTGGCGCTATCGGcccc < 1:31931392/68‑1 (MQ=255) tGGCGATAAAATTATCATCGCTATTGATGCCGGACACGGCGGTCAGGACCCTGGCGCTATCGGCCCCg < 1:15629620/68‑1 (MQ=255) tGGCGATAAAATTATCATCGCTATTGATGCCGGACACGGCGGTCAGGACCCTGGCGCTATCGGCCCCg < 1:22618593/68‑1 (MQ=255) ggCGATAAAATTATCATCGCTATTGATGCCGGACACGGCGGTCAGGACCCTGGCGCTATCGGCCCCgg > 1:8463760/1‑68 (MQ=255) cGATAAAATTATCATCGCTATTGATGCCGGACACGGCGGTCAGGACCCTGGCGCTATCGGCCCCggt < 1:33008708/67‑1 (MQ=255) cGATAAAATTATCATCGCTATTGATGCCGGACACGGCGGTCAGGACCCTGGCGCTATCGGCCCCggt < 1:4960380/67‑1 (MQ=255) cGATAAAATTATCATCGCTATTGATGCCGGACACGGCGGTCAGGACCCTGGCGCTATCGGCCCCggt < 1:31725526/67‑1 (MQ=255) gATAAAATTATCATCGCTATTGATGCCGGACACGGCGGTCAGGACCCTGGCGCTATCGGCCCCggtgg > 1:17944810/1‑68 (MQ=255) aaaTTATCATCGCTATTGATGCCGGACACGGCGGTCAGGACCCTGGCGCTATCGGCCCCGGTGGTAc > 1:25636031/1‑67 (MQ=255) aaaTTATCATCGCTATTGATGCCGGACACGGCGGTCAGGACCCTGGCGCTATCGGCCCCGGTGGTAc > 1:17070724/1‑67 (MQ=255) aTTATCATCGCTATTGATGCCGGACACGGCGGTCAGGACCCTGGCGCTATCGGCCCCGGTGGTAcgcg > 1:30757070/1‑68 (MQ=255) aTTATCATCGCTATTGATGCCGGACACGGCGGTCAGGACCCTGGCGCTATCGGCCCCGGTGGTAcgcg > 1:11021648/1‑68 (MQ=255) tATCATCGCTATTGATGCCGGACACGGCGGTCAGGACCCTGGCGCTATCGGCCCCGGTGGTACGCggg > 1:19478148/1‑68 (MQ=255) tcatcGCTATTGATGCCGGACACGGCGGTCAGGACCCTGGCGCTATCGGCCCCGGTGGTACGCGGgag < 1:9243544/68‑1 (MQ=255) tcatcGCTATTGATGCCGGACACGGCGGTCAGGACCCTGGCGCTATCGGCCCCGGTGGTACGCGGgag > 1:4720559/1‑68 (MQ=255) catcGCTATTGATGCCGGACACGGCGGTCAGGCCCCTGGCGCTATCGGCCCCGGTGGTACGCGGgtga > 1:30329463/1‑68 (MQ=255) catcGCTATTGATGCCGGACACGGCGGTCAGGACCCTGGCGCTATCGGCCCCGGTGGTACGCGGgaga > 1:33662395/1‑68 (MQ=255) cGCTATTGATGCCGGACACGGCGGTCAGGACCCTGGCGCTATCGGCCCCGGTGGTACGCGGGAGaaaa < 1:7050338/68‑1 (MQ=255) cGCTATTGATGCCGGACACGGCGGTCAGGACCCTGGCGCTATCGGCCCCGGTGGTACGCGGGAGaaaa < 1:32527331/68‑1 (MQ=255) tgatgaCGGACAAGGCGGTCAGGACCCTGGCGCTATCGGCCCCGGTGGTACGCGGGAGAAAAATGTc > 1:22980997/1‑67 (MQ=255) tGATGCCGGACACGGCGGTCAGGACCCTGGCGCTATCGGCCCCGGTGGTACGCGGGAGAAAAATGTc > 1:10497780/1‑67 (MQ=255) tGATGCCGGACACGGCGGTCAGGACCCTGGCGCTATCGGCCCCGGTGGTACGCGGGAGAAAAATGTc > 1:3629847/1‑67 (MQ=255) tGATGCCGGACACGGCGGTCAGGACCCTGGCGCTATCGGCCCCGGTGGTACGCGGGAGAAAAATGTc > 1:34692498/1‑67 (MQ=255) tGATGCCGGACACGGCGGTCAGGACCCTGGCGCTATCGGCCCCGGTGGTACGCGGGAGAAAAATGTc > 1:22241738/1‑67 (MQ=255) tGATGCCGGACACGGCGGTCAGGACCCTGGCGCTATCGGCCCCGGTGGTACGCGGGAGAAAAATGTc > 1:19233149/1‑67 (MQ=255) tGATGCCGGACACGGCGGTCAGGACCCTGGCGCTATCGGCCCCGGTGGTACGCGGGAGAAAAATGTc > 1:18255456/1‑67 (MQ=255) tGATGCCGGACACGGCGGTCAGGACCCTGGCGCTATCGGCCCCGGTGGTACGCGGGAGAAAAATGTc > 1:1589894/1‑67 (MQ=255) tGATGCCGGACACGGCGGTCAGGACCCTGGCGCTATCGGCCCCGGTGGTACGCGGGAGAAAAATGTc > 1:15226026/1‑67 (MQ=255) tGATGCCGGACACGGCGGTCAGGACCCTGGCGCTATCGGCCCCGGTGGTACGCGGGAGAAAAATGTc > 1:13751062/1‑67 (MQ=255) tGATGCCGGACACGGCGGTCAGGACCCTGGCGCTATCGGCCCCGGTGGTACGCGGGAGAAAAATGTc > 1:13407932/1‑67 (MQ=255) gATGCCGGACACGGCGGTCAGGACCCTGGCGCTATCGGCCCCGGTGGTACGCGGGAGAAAAATGTCa > 1:28352238/1‑67 (MQ=255) gATGCCGGACACGGCGGTCAGGACCCTGGCGCTATCGGCCCCGGTGGTACGCGGGAGAAAAATGTCAc < 1:21721817/68‑1 (MQ=255) | AATACGGTAACGCGTCCGGCAGCGCGCGCGACGGCTAACACTGGCGATAAAATTATCATCGCTATTGATGCCGGACACGGCGGTCAGGACCCTGGCGCTATCGGCCCCGGTGGTACGCGGGAGAAAAATGTCACC > CP009273/4386404‑4386538 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |