| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 4622539 | 670 (1.410) | 5 (0.010) | 3/98 | NT | 0.77% | intergenic (+52/‑38) | slt/trpR | lytic murein transglycosylase, soluble/transcriptional repressor, tryptophan‑binding |
| ? | CP009273 | = 4622550 | 701 (1.690) | intergenic (+63/‑27) | slt/trpR | lytic murein transglycosylase, soluble/transcriptional repressor, tryptophan‑binding | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 126 total aligned reads displayed.
GGAATGGGGACGTCGTTACTGATCCGCACGTTTATGATATGCTATCGTACTCTTTAGCGAGTACAACCGGGGGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/4622466‑4622539‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgggggaAGCAAAATGCCTCCCCCGGTTGTACTCGCTAAAGAGTACGATAGCATATCATAAACGTGCGGATCA < CP009273/4622550‑4622485 GGAATGGGGACGTCGTTACTGATCCGCACGTTTATGATATGCTATCGTACTCTTTAGCGAGTACAACC > 1:28351850/1‑68 ATGGGGACGTCGTTACTGATCCGCACGTTTATGATATGCTATCGTACTCTTTAGCGAGTACAACCGGG > 1:5734487/1‑68 ATGGGGACGTCGTTACTGATCCGCACGTTTATGATATGCTATCGTACTCTTTAGCGAGTACAACCGGG < 1:33472215/68‑1 ATGGGGACGTCGTTACTGATCCGCACGTTTATGATATGCTATCGTACTCTTTAGCGAGTACAACCGGG > 1:31908845/1‑68 ATGGGGACGTCGTTACTGATCCGCACGTTTATGATATGCTATCGTACTCTTTAGCGAGTACAACCGGG > 1:31487906/1‑68 ATGGGGACGTCGTTACTGATCCGCACGTTTATGATATGCTATCGTACTCTTTAGCGAGTACAACCGGG > 1:30162809/1‑68 ATGGGGACGTCGTTACTGATCCGCACGTTTATGATATGCTATCGTACTCTTTAGCGAGTACAACCGGG > 1:17696468/1‑68 ATGGGGACGTCGTTACTGATCCGCACGTTTATGATATGCTATCGTACTCTTTAGCGAGTACAACCGGG > 1:23460233/1‑68 ATGGGGACGTCGTTACTGATCCGCACGTTTATGATATGCTATCGTACTCTTTAGCGAGTACAACCGGG > 1:15983986/1‑68 ATGGGGACGTCGTTACTGATCCGCACGTTTATGATATGCTATCGTACTCTTTAGCGAGTACAACCGGG > 1:26450299/1‑68 ATGGGGACGTCGTTACTGATCCGCACGTTTATGATATGCTATCGTACTCTTTAGCGAGTACAACCGGG > 1:23680013/1‑68 ATGCGGACGTCGTTACTGATCCGCACGTTTATGATATGCTATCGTACTCTTTAGCGAGTACAACCGag > 1:20610767/1‑66 TGGGGACGGCGTTACTGATCCGGACGTTTATGATATGCTATCGTACTCTTTAGCGAGTACAACCGGGG < 1:37400138/68‑1 GGGGACGTCGTTACTGATCCGCACGTTTATGATATGCTATCGTACTCTTTAGCGAGTACAACCGGGGG > 1:35886662/1‑68 GGGGACGTCGTTACTGATCCGCACGTTTATGATATGCTATCGTACTCTTTAGCGAGTACAACCGGGGG > 1:39093173/1‑68 GGGACGTCGTTACTGATCCGCACGTTTATGATATGCTATCGTACTCTTTAGCGAGTACAACCGGGGGA > 1:25292006/1‑68 GGGACGTCGTTACTGATCCGCACGTTTATGATATGCTATCGTACTCTTTAGCGAGTACAACCGGGGGA > 1:14475704/1‑68 GGGACGTCGTTACTGATCCGCACGTTTATGATATGCTATCGTACTCTTTAGCGAGTACAACCGGGGGA > 1:29821605/1‑68 GGGACGTCGTTACTGATCCGCACGTTTATGATATGCTATCGTACTCTTTAGCGAGTACAACCGGGGGA > 1:13555719/1‑68 GGGACGTCGTTACTGATCCGCACGTTTATGATATGCTATCGTACTCTTTAGCGAGTACAACCGGGGGA > 1:33485918/1‑68 GGACGTCGTTACTGATCCGCACGTTTATGATATGCTATCGTACTCTTTAGCGAGTACAACCGGGGGA < 1:22877657/67‑1 TCCGCACGTTTATGATATGCTATCGTACTCTTTAGCGCGTACAACCGGGGGCAGCAACATGCCGCCC > 1:10096686/1‑67 TCCGCACGTTTATGATATGCTATCGTACTCTTTAGCGAGTACAACCGGGGGTAGCAAAATGCCTCCC > 1:5460281/1‑67 TCCGCACGTTTATGATATGCTATCGTACTCTTTAGCGAGTACAACCGGGGGAAGCAAAATGCCTCCC > 1:12537275/1‑67 CCGCACGTTTATGATATGCTATCGTACTCTTTAGCGAGTACAACCGGGGGAAGCAAAATGCCTCCCCC > 1:14114371/1‑68 ACGTTTATGATATGCTATCGTACTCTTTAGCGAGTACAACCGGGGGAAGCAAAATGGCTCCCCCGGTT > 1:3679971/1‑68 CGGGGGAAGCAAAATGCCTCCCCCGGTTGTACTCGCTAAAGAGTACGATAGCATATCATAAACGTGCG > 1:19437178/1‑68 CGGGGGAAGCAAAATGCCTCCCCCGGTTGTACTCGCTAAAGAGTACGATAGCATATCATAAACGTGCG > 1:34183397/1‑68 CGGGGGAAGCAAAATGCCTCCCCCGGTTGTACTCGCTAAAGAGTACGATAGCATATCATAAACGTGCG > 1:37461352/1‑68 CGGGGGAAGCAAAATGCCTCCCCCGGTTGTACTCGCTAAAGAGTACGATAGCATATCATAAACGTGCG > 1:10016663/1‑68 CGGGGGAAGCAAAATGCCTCCCCCGGTTGTACTCGCTAAAGAGTACGATAGCATATCATAAACGTGCG > 1:34382148/1‑68 CGGGGGAAGCAAAATGCCTCCCCCGGTTGTACTCGCTAAAGAGTACGATAGCATATCATAAACGTGCG > 1:23332305/1‑68 GGGGGAAGCAAAATGCCTCCCCCGGTTGTACTCGCTAAAGAGTACGATAGCATATCATAAACGTGCGG > 1:29299161/1‑68 GGGGGAAGCAAAATGCCTCCCCCGGTTGTACTCGCTAAAGAGTACGATAGCATATCATAAACGTGCGG > 1:25184008/1‑68 GGGGGAAGCAAAATGCCTCCCCCGGTTGTACTCGCTAAAGAGTACGATAGCATATCATAAACGTGCG < 1:16206123/67‑1 GGGGGAAGCAAAATGCCTCCCCCGGTTGTACTCGCTAAAGAGTACGATAGCATATCATAAACGTGCG < 1:13031955/67‑1 GGGGAAGCAAAATGCCTCCCCCGGTTGTACTCGCTAAAGAGTACGATAGCATATCATAAACGTGCGGA > 1:37786526/1‑68 GGGGAAGCAAAATGCCTCCCCCGGTTGTACTCGCTAAAGAGTACGATAGCATATCATAAACGTGCGGA > 1:14976356/1‑68 GGGGAAGCAAAATGCCTCCCCCGGTTGTACTCGCTAAAGAGTACGATAGCATATCATAAACGTGCGGA > 1:32994473/1‑68 GGGGAAGCAAAATGCCTCCCCCGGTTGTACTCGCTAAAGAGTACGATAGCATATCATAAACGTGCGGA > 1:27698458/1‑68 ggaAAGCAAAATGCCTCCCCCGGTTGTACTCGCTAAAGAGTACGATAGCATATCATAAACGTGCGGA < 1:21205530/64‑1 GGGAAGCAAAATGCCTCCCCCGGTTGTACTCGCTAAAGAGTACGATAGCATATCATAAACGTGCGGA < 1:18990392/67‑1 GGGAAGCAAAATGCCTCCCCCGGTTGTACTCGCTAAAGAGTACGATAGCATATCATAAACGTGCGGA < 1:783059/67‑1 GGGAAGCAAAATGCCTCCCCCGGTTGTACTCGCTAAAGAGTACGATAGCATATCATAAACGTGCGGA < 1:13151660/67‑1 GGGAAGCAAAATGCCTCCCCCGGTTGTACTCGCTAAAGAGTACGATAGCATATCATAAACGTGCGGA < 1:36617677/67‑1 GGGAAGCAAAATGCCTCCCCCGGTTGTACTCGCTAAAGAGTACGATAGCATATCATAAACGTGCGGA < 1:30397688/67‑1 GGGAAGCAAAATGCCTCCCCCGGTTGTACTCGCTAAAGAGTACGATAGCATATCATAAACGTGCGGA < 1:30454090/67‑1 GGGAAGCAAAATGCCTCCCCCGGTTGTACTCGCTAAAGAGTACGATAGCATATCATAAACGTGCGGA < 1:9436991/67‑1 GGGAAGCAAAATGCCTCCCCCGGTTGTACTCGCTAAAGAGTACGATAGCATATCATAAACGTGCGGA < 1:32035207/67‑1 GGGAAGCAAAATGCCTCCCCCGGTTGTACTCGCTAAAGAGTACGATAGCATATCATAAACGTGCGGA < 1:32411435/67‑1 GGGAAGCAAAATGCCTCCCCCGGTTGTACTCGCTAAAGAGTACGATAGCATATCATAAACGTGCGGA < 1:6592767/67‑1 GGGAAGCAAAATGCCTCCCCCGGTTGTACTCGCTAAAGAGTACGATAGCATATCATAAACGTGCGGA < 1:12350367/67‑1 GGGAAGCAAAATGCCTCCCCCGGTTGTACTCGCTAAAGAGTACGATAGCATATCATAAACGTGCGGA < 1:32573495/67‑1 GGGAAGCAAAATGCCTCCCCCGGTTGTACTCGCTAAAGAGTACGATAGCATATCATAAACGTGCGGA < 1:32721428/67‑1 GGGAAGCAAAATGCCTCCCCCGGTTGTACTCGCTAAAGAGTACGATAGCATATCATAAACGTGCGGA < 1:28718579/67‑1 GGGAAGCAAAATGCCTCCCCCGGTTGTACTCGCTAAAGAGTACGATAGCATATCATAAACGTGCGGA < 1:23483573/67‑1 GGGAAGCAAAATGCCTCCCCCGGTTGTACTCGCTAAAGAGTACGATAGCATATCATAAACGTGCGGA < 1:23519978/67‑1 GGGAAGCAAAATGCCTCCCCCGGTTGTACTCGCTAAAGAGTACGATAGCATATCATAAACGTGCGGA < 1:15754580/67‑1 GGGAAGCAAAATGCCTCCCCCGGTTGTACTCGCTAAAGAGTACGATAGCATATCATAAACGTGCGGA < 1:4866278/67‑1 GGGAAGCAAAATGCCTCCCCCGGTTGTACTCGCTAAAGAGTACGATAGCATATCATAAACGTGCGGA < 1:4214576/67‑1 GGGAAGCAAAATGCCTCCCCCGGTTGTACTCGCTAAAGAGTACGATAGCATATCATAAACGTGCGGA < 1:17960547/67‑1 GGGAAGCAAAATGCCTCCCCCGGTTGTACTCGCTAAAGAGTACGATAGCATATCATAAACGTGCGGA < 1:15240342/67‑1 GGGAAGCAAAATGCCTCCCCCGGTTGTACTCGCTAAAGAGTACGATAGCATATCATAAACGTGCGGA < 1:37619913/67‑1 GGGAAGCAAAATGCCTCCCCCGGTTGTACTCGCTAAAGAGTACGATAGCATATCATAAACGTGCGGA < 1:34192357/67‑1 GGGAAGCAAAATGCCTCCCCCGGTTGTACTCGCTAAAGAGTACGATAGCATATCATAAACGTGCGGA < 1:26827930/67‑1 GGGAAGCAAAATGCCTCCCCCGGTTGTACTCGCTAAAGAGTACGATAGCATATCATAAACGTGCGGA < 1:27172651/67‑1 GGGAAGCAAAATGCCTCCCCCGGTTGTACTCGCTAAAGAGTACGATAGCATATCATAAACGTGCGGA < 1:2776272/67‑1 GGGAAGCAAAATGCCTCCCCCGGTTGTACTCGCTAAAGAGTACGATAGCATATCATAAACGTGCGGA < 1:1936558/67‑1 GGGAAGCAAAATGCCTCCCCCGGTTGTACTCGCTAAAGAGTACGATAGCATATCATAAACGTGCGGA < 1:22337609/67‑1 GGGAAGCAAAATGCCTCCCCCGGTTGTACTCGCTAAAGAGTACGATAGCATATCATAAACGTGCGGA < 1:14091068/67‑1 GGGAAGCAAAATGCCTCCCCCGGTGGTAATCGCTAAAGAGTACGATATCATATCATAAACGTGCGGA < 1:1195671/67‑1 GGAAGCAAAATGCCTCCCCCGGTTGTACTCGCTAAAGAGTACGATAGCATATCATAAACGTGCGGAT < 1:2782485/67‑1 GGAAGCAAAATGCCTCCCCCGGTTGTACTCGCTAAAGAGTACGATAGCATATCATAAACGTGCGGAT < 1:23923259/67‑1 GAAGCAAAATGCCTCCCCCGGTTGTACTCGCTAAAGAGTACGATAGCATATCATAAACGTGCGGATCA > 1:35437422/1‑68 GAAGCAAAATGCCTCCCCCGGTTGTACTCGCTAAAGAGTACGATAGCATATCATAAACGTGCGGATC < 1:8584393/67‑1 GAAGCAAAATGCCTCCCCCGGTTGTACTCGCTAAAGAGTACGATAGCATATCATAAACGTGCGGATC < 1:28221032/67‑1 GAAGCAAAATGCCTCCCCCGGTTGTACTCGCTAAAGAGTACGATAGCATATCATAAACGTGCGGATC < 1:23721627/67‑1 AAGCACAATGCCTCCCCCGGTTGTACTCGCTAAAGAGTACGATAGCATATCATAAACGTGCGGATCA < 1:38519660/67‑1 AAGCAAAATGCCTCCCCCGGTTGTACTCGCTAAAGATTACGATAGCATATCATAAACGTGCGGATCA < 1:33996244/67‑1 AAGCAAAATGCCTCCCCCGGTTGTACTCGCTAAAGAGTACGATAGCATATCATAAACGTGCGGATCA < 1:9515023/67‑1 AAGCAAAATGCCTCCCCCGGTTGTACTCGCTAAAGAGTACGATAGCATATCATAAACGTGCGGATCA < 1:359321/67‑1 AAGCAAAATGCCTCCCCCGGTTGTACTCGCTAAAGAGTACGATAGCATATCATAAACGTGCGGATCA < 1:12160523/67‑1 AAGCAAAATGCCTCCCCCGGTTGTACTCGCTAAAGAGTACGATAGCATATCATAAACGTGCGGATCA < 1:14959807/67‑1 AAGCAAAATGCCTCCCCCGGTTGTACTCGCTAAAGAGTACGATAGCATATCATAAACGTGCGGATCA < 1:18636199/67‑1 AAGCAAAATGCCTCCCCCGGTTGTACTCGCTAAAGAGTACGATAGCATATCATAAACGTGCGGATCA < 1:20068655/67‑1 AAGCAAAATGCCTCCCCCGGTTGTACTCGCTAAAGAGTACGATAGCATATCATAAACGTGCGGATCA < 1:21892427/67‑1 AAGCAAAATGCCTCCCCCGGTTGTACTCGCTAAAGAGTACGATAGCATATCATAAACGTGCGGATCA < 1:22915698/67‑1 AAGCAAAATGCCTCCCCCGGTTGTACTCGCTAAAGAGTACGATAGCATATCATAAACGTGCGGATCA < 1:23873190/67‑1 AAGCAAAATGCCTCCCCCGGTTGTACTCGCTAAAGAGTACGATAGCATATCATAAACGTGCGGATCA < 1:3922364/67‑1 AAGCAAAATGCCTCCCCCGGTTGTACTCGCTAAAGAGTACGATAGCATATCATAAACGTGCGGATCA < 1:24614164/67‑1 AAGCAAAATGCCTCCCCCGGTTGTACTCGCTAAAGAGTACGATAGCATATCATAAACGTGCGGATCA < 1:38535401/67‑1 AAGCAAAATGCCTCCCCCGGTTGTACTCGCTAAAGAGTACGATAGCATATCATAAACGTGCGGATCA < 1:38338563/67‑1 AAGCAAAATGCCTCCCCCGGTTGTACTCGCTAAAGAGTACGATAGCATATCATAAACGTGCGGATCA < 1:38231918/67‑1 AAGCAAAATGCCTCCCCCGGTTGTACTCGCTAAAGAGTACGATAGCATATCATAAACGTGCGGATCA < 1:24994864/67‑1 AAGCAAAATGCCTCCCCCGGTTGTACTCGCTAAAGAGTACGATAGCATATCATAAACGTGCGGATCA < 1:26445373/67‑1 AAGCAAAATGCCTCCCCCGGTTGTACTCGCTAAAGAGTACGATAGCATATCATAAACGTGCGGATCA < 1:31100809/67‑1 AAGCAAAATGCCTCCCCCGGTTGTACTCGCTAAAGAGTACGATAGCATATCATAAACGTGCGGATCA < 1:32432762/67‑1 AAGCAAAATGCCTCCCCCGGTTGTACTCGCTAAAGAGTACGATAGCATATCATAAACGTGCGGATCA < 1:36928870/67‑1 AAGCAAAATGCCTCCCCCGGTTGTACTCGCTAAAGAGTACGATAGCATATCATAAACGTGCGGATCA < 1:36841097/67‑1 AAGCAAAATGCCTCCCCCGGTTGTACTCGCTAAAGAGTACGATAGCATATCATAAACGTGCGGATCA < 1:33212566/67‑1 GGAATGGGGACGTCGTTACTGATCCGCACGTTTATGATATGCTATCGTACTCTTTAGCGAGTACAACCGGGGGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/4622466‑4622539‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgggggaAGCAAAATGCCTCCCCCGGTTGTACTCGCTAAAGAGTACGATAGCATATCATAAACGTGCGGATCA < CP009273/4622550‑4622485 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |