| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 4622539 | 670 (1.410) | 5 (0.010) | 3/98 | NT | 0.77% | intergenic (+52/‑38) | slt/trpR | lytic murein transglycosylase, soluble/transcriptional repressor, tryptophan‑binding |
| ? | CP009273 | = 4622550 | 701 (1.690) | intergenic (+63/‑27) | slt/trpR | lytic murein transglycosylase, soluble/transcriptional repressor, tryptophan‑binding | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 976 total aligned reads displayed.
GGGACGTCGTTACTGATCCGCACGTTTATGATATGCTATCGTACTCTTTAGCGAGTACAACCGGGGGAGGCATTTTGCTTCCCCCGCTAACAATGGCGACATATTATGGCCCAACAATCACCCTATTCAGCAGC > CP009273/4622472‑4622605 | gggACGTCGTTACTGATCCGCACGTTTATGATATGCTATCGTACTCTTTAGCGAGTACAACCGGGGGA > 1:29821605‑M1/1‑68 (MQ=255) gACGTCGTTACTGATCCGCACGTTTATGATATGCTATCGTACTCTTTAGCGAGTACAACCGGGGGAg > 1:11373309/1‑67 (MQ=255) gACGTCGTTACTGATCCGCACGTTTATGATATGCTATCGTACTCTTTAGCGAGTACAACCGGGGGAg > 1:12174907/1‑67 (MQ=255) gACGTCGTTACTGATCCGCACGTTTATGATATGCTATCGTACTCTTTAGCGAGTACAACCGGGGGAg > 1:2063708/1‑67 (MQ=255) gACGTCGTTACTGATCCGCACGTTTATGATATGCTATCGTACTCTTTAGCGAGTACAACCGGGGGAg > 1:30077618/1‑67 (MQ=255) gACGTCGTTACTGATCCGCACGTTTATGATATGCTATCGTACTCTTTAGCGAGTACAACCGGGGGAg > 1:17283806/1‑67 (MQ=255) cgtcgtTACTGATCCGCACGTTTATGATATGCTATCGTACTCTTTAGCGAGTACAACCGGGGGAGGc < 1:33147605/67‑1 (MQ=255) cgtcgtTACTGATCCGCACGTTTATGATATGCTATCGTACTCTTTAGCGAGTACAACCGGGGGAGGc < 1:24516073/67‑1 (MQ=255) cgtcgtTACTGATCCGCACGTTTATGATATGCTATCGTACTCTTTAGCGAGTACAACCGGGGGAGGCa > 1:22619199/1‑68 (MQ=255) tGATCCGCACGTTTATGATATGCTATCGTACTCTTTAGCGAGTACAACCGGGGGAGGCATTTTGCTt < 1:21892427‑M2/67‑2 (MQ=255) tGATCCGCACGTTTATGATATGCTATCGTACTCTTTAGCGAGTACAACCGGGGGAGGCATTTTGCTt < 1:32432762‑M2/67‑2 (MQ=255) aTCCGCACGTTTATGATATGCTATCGTACTCTTTAGCGAGTACAACCGGGGGAGGCATTTTGCTtcc < 1:2782485‑M2/67‑4 (MQ=255) tCCGCACGTTTATGATATGCTATCGTACTCTTTAGCGAGTACAACCGGGGGTagcaaaatgcctccc > 1:5460281‑M1/1‑52 (MQ=255) tCCGCACGTTTATGATATGCTATCGTACTCTTTAGCGAGTACAACCGGGGGAGGCATTTTGCTtccc < 1:18376060‑M2/67‑5 (MQ=255) tCCGCACGTTTATGATATGCTATCGTACTCTTTAGCGAGTACAACCGGGGGAGGCATTTTGCTtccc < 1:23519978‑M2/67‑5 (MQ=255) tCCGCACGTTTATGATATGCTATCGTACTCTTTAGCGAGTACAACCGGGGGAGGCATTTTGCTtccc < 1:1936558‑M2/67‑5 (MQ=255) tCCGCACGTTTATGATATGCTATCGTACTCTTTAGCGAGTACAACCGGGGGAGGCATTTTGCTtccc < 1:15240342‑M2/67‑5 (MQ=255) tCCGCACGTTTATGATATGCTATCGTACTCTTTAGCGAGTACAACCGGGGGAGGCATTTTGCTtccc < 1:12350367‑M2/67‑5 (MQ=255) cGCACGTTTATGATATGCTATCGTACTCTTTAGCGAGTACAACCGGGGGAGGCATTTTGCTtcccccg > 1:37461352‑M2/1‑61 (MQ=255) cGCACGTTTATGATATGCTATCGTACTCTTTAGCGAGTACAACCGGGGGAGGCATTTTGCTtcccccg > 1:23332305‑M2/1‑61 (MQ=255) cGCACGTTTATGATATGCTATCGTACTCTTTAGCGAGTACAACCGGGGGAGGCATTTTGCTtccccc < 1:13031955‑M2/67‑7 (MQ=255) cGTTTATGATATGCTATCGTACTCTTTAGCGAGTACAACCGGGGGAGGCATTTTGCTTCCCCCGCTaa < 1:37762704/68‑1 (MQ=255) cGTTTATGATATGCTATCGTACTCTTTAGCGAGTACAACCGGGGGAGGCATTTTGCTTCCCCCGCTa > 1:7081022/1‑67 (MQ=255) aTGATATGCTATCGTACTCTTTAGCGAGTACAACCGGGGGAGGCATTTTGCTTCCCCCGCTAACAATg > 1:1818682/1‑68 (MQ=255) gATATGCTATCGTACTCTTTAGCGAGTACAACCGGGGGAGGCATTTTGGTTCCCCCGCTAACAATGGc > 1:37858016/1‑68 (MQ=255) gATATGCTATCGTACTCTTTAGCGAGTACAACCGGGGGAGGCATTTTGCTTCCCCCGCTAACAATGGc > 1:19143892/1‑68 (MQ=255) gATATGCTATCGTACTCTTTAGCGAGTACAACCGGGGGAGGCATTTTGCTTCCCCCGCTAACAATGGc > 1:36722494/1‑68 (MQ=255) gATATGCTATCGTACTCTTTAGCGAGTACAACCGGGGGAGGCATTTTGCTTCCCCCGCTAACAATGGc > 1:38562178/1‑68 (MQ=255) gATATGCTATCGTACTCTTTAGCGAGTACAACCGGGGGAGGCATTTTGCTTCCCCCGCTAACAATGGc > 1:13535246/1‑68 (MQ=255) gATATGCTATCGTACTCTTTAGCGAGTACAACCGGGGGAGGCATTTTGCTTCCCCCGCTAACAATGGc > 1:18679167/1‑68 (MQ=255) gATATGCTATCGTACTCTTTAGCGAGTACAACCGGGGGAGGCATTTTGCTTCCCCCGCTAACAATGGc > 1:27451586/1‑68 (MQ=255) gATATGCTATCGTACTCTTTAGCGAGTACAACCGGGGGAGGCATTTTGCTTCCCCCGCTAACAATGGc > 1:24058406/1‑68 (MQ=255) gATATGCTATCGTACTCTTTAGCGAGTACAACCGGGGGAGGCATTTTGCTTCCCCCGCTAACAATGGc > 1:7600304/1‑68 (MQ=255) atatGCTATCGTACTCTTTAGCGAGTACAACCGGGGGAGGCATTTTGCTTCCCCCGCTAACAATGGCg > 1:17819010/1‑68 (MQ=255) tatGCTATCGTACTCTTTAGCGAGTACAACCGGGGGAGGCATTTTGCTTCCCCCGCTAACAATGGCg > 1:6311375/1‑67 (MQ=255) tatGCTATCGTACTCTTTAGCGAGTACAACCGGGGGAGGCATTTTGCTTCCCCCGCTAACAATGGCg > 1:16442451/1‑67 (MQ=255) atGCTATCGTACTCTTTAGCGAGTACAACCGGGGGAGGCATTTTGCTTCCCCCGCTAACAATGGCGAc < 1:33538831/68‑1 (MQ=255) atGCTATCGTACTCTTTAGCGAGTACAACCGGGGGAGGCATTTTGCTTCCCCCGCTAACAATGGCGAc < 1:36417881/68‑1 (MQ=255) atGCTATCGTACTCTTTAGCGAGTACAACCGGGGGAGGCATTTTGCTTCCCCCGCTAACAATGGCGAc < 1:5803233/68‑1 (MQ=255) atGCTATCGTACTCTTTAGCGAGTACAACCGGGGGAGGCATTTTGCTTCCCCCGCTAACAATGGCGAc < 1:33840802/68‑1 (MQ=255) gCTATCGTACTCTTTAGCGAGTACAACCGGGGGAGGCATTTTGCTTCCCCCGCTAACAATGGCGACat < 1:35599443/68‑1 (MQ=255) gCTATCGTACTCTTTAGCGAGTACAACCGGGGGAGGCATTTTGCTTCCCCCGCTAACAATGGCGACat > 1:25568244/1‑68 (MQ=255) gCTATCGTACTCTTTAGCGAGTACAACCGGGGGAGGCATTTTGCTTCCCCCGCTAACAATGGCGACat > 1:32774542/1‑68 (MQ=255) gCTATCGTACTCTTTAGCGAGTACAACCGGGGGAGGCATTTTGCTTCCCCCGCTAACAATGGCGACat < 1:2148433/68‑1 (MQ=255) gCTATCGTACTCTTTAGCGAGTACAACCGGGGGAGGCATTTTGCTTCCCCCGCTAACAATGGCGACat > 1:39074241/1‑68 (MQ=255) gCTATCGTACTCTTTAGCGAGTACAACCGGGGGAGGCATTTTGCTTCCCCCGCTAACAATGGCGACat < 1:14795119/68‑1 (MQ=255) cTATCGTACTCTTTAGCGAGTACAACCGGGGGAGGCATTTTGCTTCCCCCGCTAACAATGGCGCCata > 1:3339763/1‑68 (MQ=255) aTCGTACTCTTTAGCGAGTACAACCGGGGGAGGCATTTTGCTTCCCCCGCTAACAATGGCGACAtatt > 1:35349560/1‑68 (MQ=255) cGTACTCTTTAGCGAGTACAACCGGGGGAGGCATTTTGCTTCCCCCGCTAACAATGGCGACAtattat > 1:32008975/1‑68 (MQ=255) tACTCTTTAGCGAGTACAACCGGGGGAGGCATTTTGCTTCCCCCGCTAACAATGGCGACATATTATg > 1:14577103/1‑67 (MQ=255) aCTCTTTAGCGAGTACAACCGGGGGAGGCATTTTGCTTCCCCCGCTAACAATGGCGACATATTATgg > 1:12649273/1‑67 (MQ=255) aCTCTTTAGCGAGTACAACCGGGGGAGGCATTTTGCTTCCCCCGCTAACAATGGCGACATATTATgg > 1:14000832/1‑67 (MQ=255) aCTCTTTAGCGAGTACAACCGGGGGAGGCATTTTGCTTCCCCCGCTAACAATGGCGACATATTATgg > 1:17037085/1‑67 (MQ=255) tctTTAGCGAGTACAACCGGGGGAGGCATTTTGCTTCCCCCGCTAACAATGGCGACATATTATGGccc > 1:34642580/1‑68 (MQ=255) tctTTAGCGAGTACAACCGGGGGAGGCATTTTGCTTCCCCCGCTAACAATGGCGACATATTATGGccc > 1:31666687/1‑68 (MQ=255) tctTTAGCGAGTACAACCGGGGGAGGCATTTTGCTTCCCCCGCTAACAATGGCGACATATTATGGccc > 1:30587918/1‑68 (MQ=255) tctTTAGCGAGTACAACCGGGGGAGGCATTTGGCTTCCCCCGCTAACAATGGCGACATATTATGGccc > 1:26633035/1‑68 (MQ=255) ttAGCGAGTACAACCGGGGGAGGCATTTTGCTTCCCCCGCTAACAATGGCGACATATTATGGCCcaac > 1:2706872/1‑68 (MQ=255) tAGCGAGTACAACCGGGGGAGGCATTTTGCTTCCCCCGCTAACAATGGCGACATATTATGGCCcaaca < 1:22990536/68‑1 (MQ=255) tAGCGAGTACAACCGGGGGAGGCATTTTGCTTCCCCCGCTAACAATGGCGACATATTATGGCCcaaca < 1:23866132/68‑1 (MQ=255) aGCGAGTACAACCGGGGGAGGCATTTTGCTTCCCCCGCTAACAATGGCGACATATTATGGCCcaacaa > 1:31211604/1‑68 (MQ=255) gCGAGTACAACCGGGGGAGGCATTTTGCTTCCCCCGCTAACAATGGCGACATATTATGGCCcaacaa > 1:30930407/1‑67 (MQ=255) gAGTACAACCGGGGGAGGCATTTTGCTTCCCCCGCTAACAATGGCGACATATTATGGCCCAACAATc > 1:4720065/1‑67 (MQ=255) gAGTACAACCGGGGGAGGCATTTTGCTTCCCCCGCTAACAATGGCGACATATTATGGCCCAACAATc > 1:4482251/1‑67 (MQ=255) gAGTACAACCGGGGGAGGCATTTTGCTTCCCCCGCTAACAATGGCGACATATTATGGCCCAACAATc > 1:351001/1‑67 (MQ=255) gAGTACAACCGGGGGAGGCATTTTGCTTCCCCCGCTAACAATGGCGACATATTATGGCCCAACAATc > 1:7887136/1‑67 (MQ=255) gAGTACAACCGGGGGAGGCATTTTGCTTCCCCCGCTAACAATGGCGACATATTATGGCCCAACAATc > 1:9541218/1‑67 (MQ=255) gAGTACAACCGGGGGAGGCATTTTGCTTCCCCCGCTAACAATGGCGACATATTATGGCCCAACAATc > 1:24727025/1‑67 (MQ=255) gAGTACAACCGGGGGAGGCATTTTGCTTCCCCCGCTAACAATGGCGACATATTATGGCCCAACAATc > 1:10137613/1‑67 (MQ=255) gTACAACCGGGGGAGGCATTTTGCTTCCCCCGCTAACAATGGCGACATATTATGGCCCAACAATCAc < 1:39325831/67‑1 (MQ=255) gTACAACCGGGGGAGGCATTTTGCTTCCCCCGCTAACAATGGCGACATATTATGGCCCAACAATCAc > 1:15727863/1‑67 (MQ=255) gTACAACCGGGGGAGGCATTTTGCTTCCCCCGCTAACAATGGCGACATATTATGGCCCAACAATCAc < 1:38438725/67‑1 (MQ=255) gTACAACCGGGGGAGGCATTTTGCTTCCCCCGCTAACAATGGCGACATATTATGGCCCAACAATCAc < 1:26000569/67‑1 (MQ=255) aCAACCGGGGGAGGCATTTTGCTTCCCCCGCTAACAATGGCGACATATTATGGCCCAACAATCACCCt < 1:32188749/68‑1 (MQ=255) aCAACCGGGGGAGGCATTTTGCTTCCCCCGCTAACAATGGCGACATATTATGGCCCAACAATCACCCt > 1:1327323/1‑68 (MQ=255) aCAACCGGGGGAGGCATTTTGCTTCCCCCGCTAACAATGGCGACATATTATGGCCCAACAATCACCCt < 1:11853346/68‑1 (MQ=255) aCAACCGGGGGAGGCATTTTGCTTCCCCCGCTAACAATGGCGACATATTATGGCCCAACAATCACCCt < 1:10954793/68‑1 (MQ=255) aCAACCGGGGGAGGCATTTTGCTTCCCCCGCTAACAATGGCGACATATTATGGCCCAACAATCACCCt < 1:9138408/68‑1 (MQ=255) aaCCGGGGGAGGCATTTTGCTTCCCCCGCTAACAATGGCGACATATTATGGCCCAACAATCACCCTAt < 1:8489276/68‑1 (MQ=255) aaCCGGGGGAGGCATTTTGCTTCCCCCGCTAACAATGGCGACATATTATGGCCCAACAATCACCCTAt < 1:9331635/68‑1 (MQ=255) aaCCGGGGGAGGCATTTTGCTTCCCCCGCTAACAATGGCGACATATTATGGCCCAACAATCACCCTAt < 1:16157537/68‑1 (MQ=255) aCCGGGGGAGGCATTTTGCTTCCCCCGCTAACAATGGCGACATATTATGGCCCAACAATCACCCTAt > 1:6536796/1‑67 (MQ=255) cGGGGGAagcaaaatgcctcccccggttgtactcgctaaagagtacgatagcatatcataaacgtgcg > 1:10016663‑M1/1‑7 (MQ=255) cGGGGGAGGCATTTTGCTTCCCCCGCTAACAATGGCGACATATTATGGCCCAACAATCACCCTTTTca > 1:29260494/1‑68 (MQ=255) cGGGGGAGGCATTTTGCTTCCCCCGCTAACAATGGCGACATATTATGGCCCAACAATCACCCTATTca > 1:25066392/1‑68 (MQ=255) cGGGGGAGGCATTTTGCCTCCCCCGCTAACAATGGCGACATATTATGGCCCAACAATCACCCTATTca < 1:3976045/68‑1 (MQ=255) gggAagcaaaatgcctcccccggttgtactcgctaaagagtacgatagcatatcataaacgtgcgga < 1:30397688‑M1/67‑64 (MQ=255) gggAagcaaaatgcctcccccggttgtactcgctaaagagtacgatagcatatcataaacgtgcgga < 1:5210021‑M1/67‑64 (MQ=255) gggAagcaaaatgcctcccccggttgtactcgctaaagagtacgatagcatatcataaacgtgcgga < 1:22337609‑M1/67‑64 (MQ=255) gggAagcaaaatgcctcccccggttgtactcgctaaagagtacgatagcatatcataaacgtgcgga < 1:28718579‑M1/67‑64 (MQ=255) gggAagcaaaatgcctcccccggttgtactcgctaaagagtacgatagcatatcataaacgtgcgga < 1:34192357‑M1/67‑64 (MQ=255) ggaaagcaaaatgcctcccccggttgtactcgctaaagagtacgatagcatatcataaacgtgcgga < 1:21205530‑M1/64‑64 (MQ=255) gAagcaaaatgcctcccccggttgtactcgctaaagagtacgatagcatatcataaacgtgcggatc < 1:28221032‑M1/67‑66 (MQ=255) gAGGCATTTTGCTTCCCCCGCTAACAATGGCGACATATTATGGCCCAACAATCACCCTATTcagcag < 1:17644937/67‑1 (MQ=255) gAGGCATTTTGCTTCCCCCGCTAACAATGGCGACATATTATGGCCCAACAATCACCCTATTcagcag < 1:1966047/67‑1 (MQ=255) gAGGCATTTTGCTTCCCCCGCTAACAATGGCGACATATTATGGCCCAACAATCACCCTATTCagcagc > 1:22876328/1‑68 (MQ=255) aagcaaaatgcctcccccggttgtactcgctaaagagtacgatagcatatcataaacgtgcggatca < 1:20068655‑M1/67‑67 (MQ=255) aagcaaaatgcctcccccggttgtactcgctaaagagtacgatagcatatcataaacgtgcggatca < 1:36928870‑M1/67‑67 (MQ=255) aagcaaaatgcctcccccggttgtactcgctaaagagtacgatagcatatcataaacgtgcggatca < 1:359321‑M1/67‑67 (MQ=255) aagcaaaatgcctcccccggttgtactcgctaaagagtacgatagcatatcataaacgtgcggatca < 1:26445373‑M1/67‑67 (MQ=255) | GGGACGTCGTTACTGATCCGCACGTTTATGATATGCTATCGTACTCTTTAGCGAGTACAACCGGGGGAGGCATTTTGCTTCCCCCGCTAACAATGGCGACATATTATGGCCCAACAATCACCCTATTCAGCAGC > CP009273/4622472‑4622605 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |