BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 282361	259 (0.550)	18 (0.050)	9/92	NT	6.6%	coding (1256/1383 nt)	yagG	CP4‑6 prophage; putative sugar transporter
*	?	CP009273	= 282393	298 (0.760)	18 (0.050)	9/92	NT	6.6%	coding (1288/1383 nt)	yagG	CP4‑6 prophage; putative sugar transporter

Only 100 of 146 total aligned reads displayed.

GTGCAGCCGGTTGAGGTGCTCACCACCATCAAAATTCTGTTCTGCGTGGTGCCGGTGGTGCTCTACGCGGGCAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/282288‑282361

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acgcgggcatCGGTGAGCTTGTAGAGCGACAGCATGATGAACATGCCCGCGTAGAGCACCACCGGCACCACGCAGA  <  CP009273/282393‑282328

cTGCAGCCGGTTGAGGTGCTCACCACCATCAAAATTCTGTTCTGCGTGGTGCCGGTGGTGCTCTACGC                                                                          >  1:38895429/2‑68

GTGCAGCCGGTTGAGGTGCTCACCACCATCAAAATTCTGTTCTGCGTGGTGCCGGTGGTGCTCTAC                                                                            <  1:25364418/66‑1

GTGCAGCCGGTTGAGGTGCTCACCACCATCAAAATTCTGTTCTGCGTGGTGCCGGTGGTGCTCTAC                                                                            <  1:32800930/66‑1

GTGCAGCCGGTTGAGGTGCTCACCACCATCAAAATTCTGTTCTGCGTGGTGCCGGTGGTGCTCTAC                                                                            <  1:7707625/66‑1

GTGCAGCCGGTTGAGGTGCTCACCACCATCAAAATTCTGTTCTGCGTGGTGCCGGTGGTGCTCTAC                                                                            <  1:11373051/66‑1

GTGCAGCCGGTTGAGGTGCTCACCACCATCAAAATTCTGTTCTGCGTGGTGCCGGTGGTGCTCTAC                                                                            <  1:5005187/66‑1

GTGCAGCCGGTTGAGGTGCTCACCACCATCAAAATTCTGTTCTGCGTGGTGCCGGTGGTGCTCTAC                                                                            <  1:4498006/66‑1

GTGCAGCCGGTTGAGGTGCTCACCACCATCAAAATTCTGTGCTGCGTGGTGCCGGTGGTGCTCTAC                                                                            <  1:33116981/66‑1

GTGCAGCCGGTAGAGGGGCTCACCACCATCAAAATTGTGTTCTGCGTGGTGCCGGTGGTGCTCTAC                                                                            <  1:21138412/66‑1

    AGCCGGTTGAGGTGCTCACCACCATCAAAATTCTGTTCTGCGTGGTGCCGGTGGTGCTCTACGCGGG                                                                       <  1:442824/67‑1

    AGCCGGTTGAGGTGCTCACCACCATCAAAATTCTGTTCTGCGTGGTGCCGGTGGTGCTCTACGCGGG                                                                       <  1:31143309/67‑1

    AGCCGGTTGAGGTGCTCACCACCATCAAAATTCTGTTCTGCGTGGTGCCGGTGGTGCTCTACGCGGG                                                                       <  1:4170972/67‑1

    AGCCGGTTGAGGTGCTCACCACCATCAAAATTCTGTTCTGCGTGGTGCCGGTGGTGCTCTACGCGGG                                                                       <  1:16538906/67‑1

    AGCCGGTTGAGGTGCTCACCACCATCAAAATTCTGTTCTGCGTGGTGCCGGTGGTGCTCTACGCGGG                                                                       <  1:4319097/67‑1

    AGCCGGTTGAGGTGCTCACCACCATCAAAATTCTGTTCTGCGTGGTGCCGGTGGTGCTCTACGCGGG                                                                       <  1:26169588/67‑1

    AGCCGGTTGAGGTGCTCACCACCATCAAAATTCTGTTCTGCGTGGGGCCGGTGGTGCTCTACGCGGG                                                                       <  1:38151472/67‑1

    AGCCGGTTGAGGTGCTCACCACCATCAAAATTCTGTTCTGCGTGGAGCCGGTGGTGCTCTACGCGGG                                                                       <  1:38107300/67‑1

     GCCGGTTGAGGTGCTCACCACCATCAAAATTCTGTTCTGCGTGGTGCCGGTGGTGCTCTACGCGGGCA                                                                     >  1:5101576/1‑68

     GCCGGTTGAGGTGCTCACCACCATCAAAATTCTGTTCTGCGTGGTGCCGGTGGTGCTCTACGCGGGCA                                                                     >  1:697797/1‑68

     GCCGGTTGAGGTGCTCACCACCATCAAAATTCTGTTCTGCGTGGTGCCGGTGGTGCTCTACGCGGGCA                                                                     >  1:8215707/1‑68

     GCCGGTTGAGGTGCTCACCACCATCAAAATTCTGTTCTGCGTGGTGCCGGTGGTGCTCTACGCGGGCA                                                                     >  1:25949605/1‑68

     GCCGGTTGAGGTGCTCACCACCATCAAAATTCTGTTCTGCGTGGTGCCGGTGGTGCTCTACGCGGGCA                                                                     >  1:21388301/1‑68

      CCGGTTGAGGTGCTCACCACCATCAAAATTCTGTTCTGCGTGGTGCCGGTGGTGCTCTACGCGGGCAT                                                                    >  1:5486918/1‑68

       CGGTTGAGGTGCTCCCCACCATCAAAATTCTGTTCTGCGTGGTGCCGGTGGTGCTCTACGCGGGCA                                                                     <  1:7141461/66‑1

       CGGTTGAGGTGCTCACCACCATCAAAATTCTGTTCTGCGTGGTGCCGGTGGTGCTCTACGCGGGCATC                                                                   >  1:2728118/1‑68

       CGGTTGAGGTGCTCACCACCATCAAAATTCTGTTCTGCGTGGTGCCGGTGGTGCTCTACGCGGGCAT                                                                    <  1:5372960/67‑1

       CGGTTGAGGTGCTCACCACCATCAAAATTCTGTTCTGCGTGGTGCCGGTGGTGCTCTACGCGGGCAT                                                                    <  1:3651946/67‑1

       CGGTTGAGGTGCTCACCACCATCAAAATTCTGTTCTGCGTGGTGCCGGTGGTGCTCTACGCGGGCA                                                                     <  1:17982212/66‑1

       CGGTTGAGGTGCTCACCACCATCAAAATTCTGTTCTGCGTGGTGCCGGTGGTGCTCTACGCGGGCA                                                                     <  1:8370346/66‑1

              GGTGCTCACCACCATCAAAATTCTGTTCTGCGTGGTGCCGGTGGTGCTCTACGCGGGCATCGGTGAG                                                             <  1:26532549/67‑1

              GGTGCTCACCACCATCAAAATTCTGTTCTGCGTGGTGCCGGTGGTGCTCTACGCGGGCATCGGTGAG                                                             <  1:1357470/67‑1

                                AATTCTGTTCTGCGTGGTGCCGGTGGTGCTCTACGCGGGCATCGGTGAGCTTGTAGAGCGACAGCATG                                          <  1:28848045/68‑1

                                    CTGTTCTGCGTGGTGCCGGTGGTGCTCTACGCGGGCATCGGTGAGCTTGTAGAGCGACAGCATGATGA                                      <  1:31151927/68‑1

                                    CTGTTCTGCGTGGTGCCGGTGGTGCTCTACGCGGGCATCGGTGAGCTTGTAGAGCGACAGCATGATGA                                      <  1:1021919/68‑1

                                    CTGTGCTGCGTGGTGCCGGTGGTGCTCTACGCGGGCATCGGTGAGCTTGTAGAGCGACAGCATGATGA                                      <  1:376205/68‑1

                                         CTGCGTGGTGCCGGTGGTGCTCTACGCGGGCATCGGTGAGCTTGTAGAGCGACAGCATGATGAACATG                                 <  1:29510157/68‑1

                                         CTGCGTGGTGCCGGTGGTGCTCTACGCGGGCATCGGTGAGCTTGTAGAGCGACAGCATGATGAACATG                                 <  1:22399656/68‑1

                                         CTGCGGGGTGCCGGTGGTGCTCTACGCGGGCATCGGTGAGCTTGTAGAGCGACAGCATGATGAACATG                                 <  1:38499396/68‑1

                                               GGTGCCGGTGGTGCTCTACGCGGGCATCGGTGAGCTTGTAGAGCGACAGCATGATGAACATGCCCGCG                           <  1:31744995/68‑1

                                                  GCCGGTGGTGCTCTACGCGGGCATCGGTGAGCTTGTAGAGCGACGGCATGATGAACATGCCCGCGTgg                        >  1:10372402/1‑66

                                                       TGGTGCTCTACGCGGGCATCGGTGAGCTTGTAGAGCGACAGCATGATGAACATGCCCGCGTGGAGgcc                   >  1:1517821/1‑65

                                                       TGGTGCTCCACGCGGGCATCGGTGAGCTTGTAGAGCGACAGCATGATGAACATGCCCGCGTAGAGCA                    >  1:6627580/1‑67

                                                                ACGCGGGCATCGGTGAGCTTGTAGAGCGACAGCATGATGAACATGCCCGCGTAGAGCACCACCGGCA           >  1:4171262/1‑67

                                                                ACGCGGGCATCGGTGAGCTTGTAGAGCGACAGCATGATGAACATGCCCGCGTAGAGCACCACCGGCA           >  1:35393442/1‑67

                                                                 CGCGGGCATCGGTGAGCTTGTAGAGCGACAGCATGATGAACATGCCCGCGTAGAGCTCCACCGGCAac         >  1:21825088/1‑66

                                                                 CGCGGGCATCGGTGAGCTTGTAGAGCGACAGCATGATGAACATGCCCGCGTAGAGCACCACCGGCACC         >  1:24474808/1‑68

                                                                 CGCGGGCATCGGTGAGCTTGTAGAGCGACAGCATGATGAACATGCCCGCGTAGAGCACCACCGGCACC         <  1:30646463/68‑1

                                                                 CGCGGGCATCGGTGAGCTTGTAGAGCGACAGCATGATGAACATGCCCGCGTAGAGCACCACCGGCACC         >  1:35234456/1‑68

                                                                  GCGGGCATCGGTGAGCTTGTAGAGCGACAGCATGATGAACATGCCCGCGTAGAGCTCCACCGGCACC         >  1:637251/1‑67

                                                                  GCGGGCATCGGTGAGCTTGTAGAGCGACAGCATGATGAACATGCCCGCGTAGAGCACCACCGGCACC         >  1:34282045/1‑67

                                                                  GCGGGCATCGGTGAGCTTGTAGAGCGACAGCATGATGAACATGCCCGCGTAGAGCACCACCGGCACC         >  1:12722775/1‑67

                                                                  GCGGGCATCGGTGAGCTTGTAGAGCGACAGCATGATGAACATGCCCGCGTAGAGCACCACCGGCACC         >  1:20387663/1‑67

                                                                  GCGGGCATCGGTGAGCTTGTAGAGCGACAGCATGATGAACATGCCCGCGTAGAGCACCACCGGCACC         >  1:12431761/1‑67

                                                                  GCGGGCATCGGTGAGCTTGTAGAGCGACAGCATGATGAACATGCCCGCGTAGAGCACCACCGGCACC         >  1:29549896/1‑67

                                                                  GCGGGCATCGGTGAGCTTGTAGAGCGACAGCATGATGAACATGCCCGCGTAGAGCACCACCGGCACC         >  1:29733833/1‑67

                                                                  GCGGGCATCGGTGAGCTTGTAGAGCGACAGCATGATGAACATGCCCGCGTAGAGCACCACCGGCACC         >  1:23061444/1‑67

                                                                  GCGGGCATCGGTGAGCTTGTAGAGCGACAGCATGATGAACATGCCCGCGTAGAGCACCACCGGCACC         >  1:3896105/1‑67

                                                                   CGGGCATCGGTGAGCTTGTAGAGCGACAGCATGATGAACATGCCCGCGTAGAGCACCACCGGCACCAC       >  1:3632356/1‑68

                                                                   CGGGCATCGGTGAGCTTGTAGAGCGACAGCATGATGAACATGCCCGCGTAGAGCACCACCGGCACCAC       >  1:24765123/1‑68

                                                                   CGGGCATCGGTGAGCTTGTAGAGCGACAGCATGATGAACATGCCCGCGTAGAGCACCACCGGCACCAC       >  1:28431407/1‑68

                                                                    gtGCATCTGGGAGCATGTATATCGACAGCATGATGAACATGCCCGCGTAGAGCACCACCGGCACCAC       <  1:10005269/65‑1

                                                                    GGGCATCGGTGAGCTTGTAGAGCGACAGCATGATGAACATGCCCGCGTAGAGCACCACCGGCACCAC       <  1:29544663/67‑1

                                                                    GGGCATCGGTGAGCTTGTAGAGCGACAGCATGATGAACATGCCCGCGTAGAGCACCACCGGCACCAC       <  1:24691672/67‑1

                                                                    GGGCATCGGTGAGCTTGTAGAGCGACAGCATGATGAACATGCCCGCGTAGAGCACCACCGGCACCAC       <  1:20008676/67‑1

                                                                    GGGCATCGGTGAGCTTGTAGAGCGACAGCATGATGAACATGCCCGCGTAGAGCACCACCGGCACCAC       <  1:8993321/67‑1

                                                                    GGGCATCGGTGAGCTTGTAGAGCGACAGCATGATGAACATGCCCGCGTAGAGCACCACCGGCACCAC       <  1:10928624/67‑1

                                                                    GGGCATCGGTGAGCTTGTAGAGCGACAGCATGATGAACATGCCCGCGTAGAGCACCACCGGCACCAC       <  1:29518006/67‑1

                                                                     GGCATCGGTGAGCTTGTAGCGCGACAGCATGATGAACATGCCCGCGTAGAGCACCCCCGGCACCACGC     >  1:29156964/1‑68

                                                                     GGCATCGGTGAGCTTGTAGAGCGACAGCATGATGAACATGCCCGCGTAGAGCACCACCGGCACCACGC     >  1:15358858/1‑68

                                                                     GGCATCGGTGAGCTTGTAGAGCGACAGCATGATGAACATGCCCGCGTAGAGCACCACCGGCACCACGC     >  1:25563511/1‑68

                                                                     GGCATCGGTGAGCTTGTAGAGCGACAGCATGATGAACATGCCCGCGTAGAGCACCACCGGCACCACGC     >  1:18509500/1‑68

                                                                     GGCATCGGTGAGCTTGTAGAGCGACAGCATGATGAACATGCCCGCGTAGAGCACCACCGGCACCACGC     >  1:17055272/1‑68

                                                                      GCATCGGTGAGCTTGTAGAGCGACAGCATGATGAACATGCCCGCGTAGAGCACCACCGGCACCACGC     <  1:34566332/67‑1

                                                                      GCATCGGTGAGCTTGTAGAGCGACAGCATGATGAACATGCCCGCGTAGAGCACCACCGGCACCACGC     <  1:16108075/67‑1

                                                                      GCATCGGTGAGCTTGTAGAGCGACAGCATGATGAACATGCCCGCGTAGAGCACCACCGGCACCACGC     >  1:21604459/1‑67

                                                                      GCATCGGTGAGCTTGTAGAGCGACAGCATGATGAACATGCCCGCGTAGAGCACCACCGGCACCACGC     <  1:38832122/67‑1

                                                                       CATCGGTGAGCTTGTAGAGCGACAGCATGATGAACATGCCCGCGTAGAGCACCCCCGGCACCACGCAG   >  1:11073588/1‑68

                                                                       CATCGGTGAGCTTGTAGAGCGACAGCATGATGAACATGCCCGCGTAGAGCACCACCGGCACCACGCAG   >  1:5520093/1‑68

                                                                       CATCGGTGAGCTTGTAGAGCGACAGCATGATGAACATGCCCGCGTAGAGCACCACCGGCACCACGCAG   >  1:25037395/1‑68

                                                                       CATCGGTGAGCTTGTAGAGCGACAGCATGATGAACATGCCCGCGTAGAGCACCACCGGCACCACGCAG   >  1:22614732/1‑68

                                                                       CATCGGTGAGCTTGTAGAGCGACAGCATGATGAACATGCCCGCGTAGAGCACCACCGGCACCACGCAG   >  1:27896760/1‑68

                                                                        ATCGGTGAGCTTGTAGAGCGACAGCATGATGAACATGCCCGCGTAGAGCACCACCGGCACCACGCAGA  <  1:19300477/68‑1

                                                                        ATCGGTGAGCTTGTAGAGCGACAGCATGATGAACATGCCCGCGTAGAGCACCACCGGCACCACGCAGA  <  1:8690541/68‑1

                                                                        ATCGGTGAGCTTGTAGAGCGACAGCATGATGAACATGCCCGCGTAGAGCACCACCGGCACCACGCAGA  <  1:10654253/68‑1

                                                                        ATCGGTGAGCTTGTAGAGCGACAGCATGATGAACATGCCCGCGTAGAGCACCACCGGCACCACGCAGA  <  1:7717712/68‑1

                                                                        ATCGGTGAGCTTGTAGAGCGACAGCATGATGAACATGCCCGCGTAGAGCACCACCGGCACCACGCAGA  <  1:28499143/68‑1

                                                                        ATCGGTGAGCTTGTAGAGCGACAGCATGATGAACATGCCCGCGTAGAGCACCACCGGCACCACGCAGA  <  1:21947049/68‑1

                                                                        ATCGGTGAGCTTGTAGAGCGACAGCATGATGAACATGCCCGCGTAGAGCACCACCGGCACCACGCAGA  <  1:31053927/68‑1

                                                                        ATCGGTGAGCTTGTAGAGCGACAGCATGATGAACATGCCCGCGTAGAGCACCACCGGCACCACGCAGA  <  1:31299092/68‑1

                                                                        ATCGGTGAGCTTGTAGAGCGACAGCATGATGAACATGCCCGCGTAGAGCACCACCGGCACCACGCAGA  <  1:32269924/68‑1

                                                                        ATCGGTGAGCTTGTAGAGCGACAGCATGATGAACATGCCCGCGTAGAGCACCACCGGCACCACGCAGA  <  1:20242698/68‑1

                                                                        ATCGGTGAGCTTGTAGAGCGACAGCATGATGAACATGCCCGCGTAGAGCACCACCGGCACCACGCAGA  <  1:14602614/68‑1

                                                                        ATCGGTGAGCTTGTAGAGCGACAGCATGATGAACATGCCCGCGTAGAGCACCACCGGCACCACGCAGA  <  1:5213672/68‑1

                                                                        ATCGGTGAGCTTGTAGAGCGACAGCATGATGAACATGCCCGCGTAGAGCACCACCGGCACCACGCAGA  <  1:14728802/68‑1

                                                                        ATCGGTGAGCTTGTAGAGCGACAGCATGATGAACATGCCCGCGTAGAGCACCACCGGCACCACGCAGA  <  1:36025013/68‑1

                                                                        ATCGGTGAGCTTGTAGAGCGACAGCATGATGAACATGCCCGCGTAGAGCACCACCGGCACCACGCAGA  <  1:19622549/68‑1

                                                                        ATCGGTGAGCTTGTAGAGCGACAGCATGATGAACATGCCCGCGTAGAGCACCACCGGCACCACGCAGA  <  1:15798275/68‑1

                                                                        ATCGGTGAGCTTGTAGAGCGACAGCATGATGAACATGCCCGCGTAGAGCACCACCGGCACCACGCAGA  <  1:19312749/68‑1

                                                                        ATCGGTGAGCTTGTAGAGCGACAGCATGATGAACATGCCCGCGTAGAGCACCACCGGCACCACGCAGA  <  1:39558403/68‑1

                                                                        ATCGGTGAGCTTGTAGAGCGAAAGCATGATGAACATGCCCGCGTAGAGCACCACCGGCACCACGCAGA  <  1:26519301/68‑1

GTGCAGCCGGTTGAGGTGCTCACCACCATCAAAATTCTGTTCTGCGTGGTGCCGGTGGTGCTCTACGCGGGCAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/282288‑282361

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acgcgggcatCGGTGAGCTTGTAGAGCGACAGCATGATGAACATGCCCGCGTAGAGCACCACCGGCACCACGCAGA  <  CP009273/282393‑282328

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.