| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 1132892 = | 323 (0.680) | 28 (0.080) | 17/86 | NT | 7.6% | coding (66/942 nt) | flgJ | flagellar rod assembly protein and murein hydrolase; flagellum‑specific muramidase |
| ? | CP009273 | = 1146583 | 437 (1.200) | coding (458/735 nt) | fabG | 3‑oxoacyl‑[acyl‑carrier‑protein] reductase | |||||
Only 100 of 247 total aligned reads displayed.
ACATCATCTGCACGAACATCCCTTCCACCTGACGGGCCACCGGACGGATATTTGCCGCCGGATCTTCGCCCGCTTTCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/1132971‑1132892‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccgctttcgccGCAGCGTAGTTGGCCTGACCGCCATTTCCCATGGTACCAACCACAGAACCGATAGTGATAATACGAC < CP009273/1146583‑1146517 ATCATCTGCACGAACATCCCTTCCACCTGACGGGCCACCGGACGGATATTTGCCGCCGGATCTTCGC > 1:3021612/1‑67 ATCATCTGCACGAACATCCCTTCCACCTGACGGGCCACCGGACGGATATTTGCCGCCGGATCTTCGC > 1:23131463/1‑67 ATCATCTGCACGAACATCCCTTCCACCTGACGGGCCACCGGACGGATATTTGCCGCCGGATCTTCGC > 1:3499728/1‑67 ATCATCTGCACGAACATCCCTTCCACCTGACGGGCCACCGGACGGATATTTGCCGCCGGATCTTCGC > 1:18887040/1‑67 ATCATCTGCACGAACATCCCTTCCACCTGACGGGCCACCGGACGGATATTTGCCGCCGGATCTTCGC > 1:30848822/1‑67 ATCATCTGCACGAACATCCCTTCCACCTGACGGGCCACCGGACGGATATTTGCCGCCGGATCTTCGC > 1:13209095/1‑67 ATCATCTGCACGAACATCCCTTCCACCTGACGGGCCACCGGACGGATATTTGCCGCCGGATCTTCGC > 1:8189800/1‑67 ATCATCTGCACGAACATCCCTTCCACCTGACGGGCCACCGGACGGATATTTGCCGCCGGATCTTCGC > 1:14147959/1‑67 ATCATCTGCACGAACATCCCTTCCACCTGACGGGCCACCGGACGGATATTTGCCGCCGGATCTTCGC > 1:14471404/1‑67 ATCATCTGCACGAACATCCCTTCCACCTGACGGGCCACCGGACGGATATTTGCCGCCGGATCTTCGC > 1:7660194/1‑67 ATCATCTGCACGAACATCCCTTCCACCTGACGGGCCACCGGACGGATATTTGCCGCCGGATCTTCGC > 1:32427035/1‑67 ATCATCTGCACGAACATCCCTTCCACCTGACGGGCCACCGGACGGATATTTGCCGCCGGATCTTCGC > 1:5004862/1‑67 ATCTGCACGAACATCCCTTCCACCTGACGGGCCACCGGACGGATATTTGCCGCCGGATCTTCGCCCGC < 1:10038001/68‑1 ATCTGCACGAACATCCCTTCCACCTGACGGGCCACCGGACGGATATTTGCCGCCGGATCTTCGCCCGC < 1:34663446/68‑1 ATCTGCACGAACATCCCTTCCACCTGACGGGCCACCGGACGGATATTTGCCGCCGGATCTTCGCCC > 1:22697378/1‑66 ATCTGCACGAACATCCCTTCCACCTGACGGGCCACCGGACGGATATTTGCCGCCGGATCTTCGCCC > 1:31725123/1‑66 TCTGCACGAACATCCCTTCCACCTGACGGGCCACCGGACGGATATTTGCCGCCGGATCTTCGCCCGCT < 1:337569/68‑1 TCTGCACGAACATCCCTTCCACCTGACGGGCCACCGGACGGATATTTGCCGCCGGATCTTCGCCCGCT < 1:10552619/68‑1 TCTGCACGAACATCCCTTCCACCTGACGGGCCACCGGACGGAGATTTGCCGCCGGATCTTCGCCCGCT > 1:33294217/1‑68 CTGCACGAACATCCCTTCCACCTGACGGGCCACCGGACGGATATTTGCCGCCGGATCTTCGCCCGCTT > 1:31278780/1‑68 CTGCACGAACATCCCTTCCACCTGACGGGCCACCGGACGGATATTTGCCGCCGGATCTTCGCCCGCTT > 1:12299325/1‑68 CTGCACGAACATCCCTTCCACCTGACGGGCCACCGGACGGATATTTGCCGCCGGATCTTCGCCCGCTT > 1:11224054/1‑68 CTGCACGAACATCCCTTCCACCTGACGGGCCACCGGACGGATATTTGCCGCCGGATCTTCGCCCGCTT > 1:35276804/1‑68 TGCACGAACATCCCTTCCACCTGACGGGCCACCGGACGGATATTTGCCGCCGGATCTTCGCCCGCTTT < 1:36727905/68‑1 tCGAACATCCCTTCCACCTGACGGGCCACCGGACGGATATTTGCCGGCGGATCTTCGCCCGCTTTCGC < 1:9217054/67‑1 ACGAACATCCCTTCCACCTGACGGGCCACCGGACGGATATTTGCCGCCGGATCTTCGCCCGCTTTCG > 1:32175141/1‑67 ACGAACATCCCTTCCACCTGACGGGCCACCGGACGGATATTTGCCGCCGGATCTTCGCCCGCTTTCG > 1:36008791/1‑67 ACGAACATCCCTTCCACCTGACGGGCCACCGGACGGATATTTGCCGCCGGATCTTCGCCCGCTTTCG > 1:38187/1‑67 ACGAACATCCCTTCCACCTGACGGGCCACCGGACGGATATTTGCCGCCGGATCTTCGCCCGCTTTCG > 1:19298898/1‑67 CGAACATCCCTTCCACCTGACGGGCCACCGGACGGATATTTGCCGCCGGATCTTCGCCCGCTTTCGCC < 1:37843948/68‑1 CGAACATCCCTTCCACCTGACGGGCCACCGGACGGATATTTGCCGCCGGATCTTCGCCCGCTTTCGCC < 1:5413654/68‑1 CGAACATCCCTTCCACCTGACGGGCCACCGGACGGATATTTGCCGCCGGATCTTCGCCCGCTTTCGCC < 1:18164364/68‑1 CTTCCACCTGACGGGCCACCGGACGGATATTTGCCGCCGGATCTTCGCCCGCTTTCGCCGCAGCGTAG > 1:1036597/1‑68 TCCACCTGACGGGCCACCGGACGGATATTTGCCGCCGGATCTTCGCCCGCTTTCGCCGCAGCGTAGTT > 1:5924905/1‑68 CACCTGACGGGCCACCGGACGGATATTTGCCGCCGGATCTTCGCCCGCTTTCGCCGCAGCGTAGTTG > 1:23795334/1‑67 CCTGACGGGCCACCGGACGGATATTTGCCGCCGGATCTTCGCCCGCTTTCGCCGCAGCGTAGTTGG > 1:24832683/1‑66 CCTGACGGGCCACCGGACGGATATTTGCCGCCGGATCTTCGCCCGCTTTCGCCGCAGCGTAGTTGG > 1:31468886/1‑66 GACGGGCCACCGGACGGATATTTGCCGCCGGATCTTCGCCCGCTTTCGCCGCAGCGTAGTTGGCCTGA < 1:36265636/68‑1 CCACCGGACGGATATTTGCCGCCGGATCTTCGCCCGCTTTCGCCGCAGCGTAGTTGGCCTGACCGCC < 1:21061071/67‑1 CCACCGGACGGATATTTGCCGCCGGATCTTCGCCCGCTTTCGCCGCAGCGTAGTTGGCCTGACCGCC < 1:3371556/67‑1 CCGGACGGATATTTGCCGCCGGATCTTCGCCCGCTTTCGCCGCAGCGTAGTTGGCCTGACCGCCATTT < 1:9026681/68‑1 CGGACGGATATTTGCCGCCGGATCTTCGCCCGCTTTCGCCGCAGCGTAGTTGGCCTGACCGCCATTTC < 1:18599361/68‑1 CGGACGGATATTTGCCGCCGGATCTTCGCCCGCTTTCGCCGCAGCGTAGTTGGCCTGACCGCCATTTC < 1:27779833/68‑1 ACGGATATTTGCCGCCGGATCTTCGCCCGCTTTCGCCGCAGCGTAGTTGGCCTGACCGCCATTTCCC < 1:1827510/67‑1 TATTTGCCGCCGGATCTTCGCCCGCTTTCGCCGCAGCGTAGTTGGCCTGACCGCCATTTCCCATGGT < 1:38355231/67‑1 TATTTGCCGCCGGATCTTCGCCCGCTTTCGCCGCAGCGTAGTTGGCCTGACCGCCATTTCCCATGGT < 1:17880564/67‑1 CCCGCTTTCGCCGCAGCGTAGTTGGCCTGACCGCCATTTCCCATGGTACCAACCACAGAACCGGTAGT > 1:27141012/1‑68 CCCGCTTTCGCCGCAGCGTAGTTGGCCTGACCGCCATTTCCCATGGTACCAACCACAGAACCGATAGT > 1:9388063/1‑68 CCCGCTTTCGCCGCAGCGTAGTTGGCCTGACCGCCATTTCCCATGGTACCAACCACAGAACCGATAGT > 1:6038377/1‑68 CCCGCTTTCGCCGCAGCGTAGTTGGCCTGACCGCCATTTCCCATGGTACCAACCACAGAACCGATAGT > 1:37234027/1‑68 CCCGCTTTCGCCGCAGCGTAGTTGGCCTGACCGCCATTTCCCATGGTACCAACCACAGAACCGATAGT > 1:12525417/1‑68 CCCGCTTTCGCCGCAGCGTAGTTGGCCTGACCGCCATTTCCCATGGTACCAACCACAGAACCGATAGT > 1:26285997/1‑68 cctCTTTCGCCGCAGCGTAGTTGGCCTGACCGCCATTTCACATGGTACCAACCACAGAACCGATAGT < 1:30721473/64‑1 CCGCTTTCGCCGCAGCGTAGTTGGCCTGACCGCCATTTCCCATGGTACCAACCACAGAACCGATAGTG > 1:23850218/1‑68 CCGCTTTCGCCGCAGCGTAGTTGGCCTGACCGCCATTTCCCATGGTACCAACCACAGAACCGATAGTG < 1:2414188/68‑1 CCGCTTTCGCCGCAGCGTAGTTGGCCTGACCGCCATTTCCCATGGTACCAACCACAGAACCGATAGTG < 1:31926224/68‑1 CCGCTTTCGCCGCAGCGTAGTTGGCCTGACCGCCATTTCCCATGGTACCAACCACAGAACCGATAGT < 1:26720263/67‑1 CCGCTTTCGCCGCAGCGTAGTTGGCCTGACCGCCATTTCCCATGGTACCAACCACAGAACCGATAGT < 1:3676855/67‑1 CCGCTTTCGCCGCAGCGTAGTTGGCCTGACCGCCATTTCCCATGGTACCAACCACAGAACCGATAGT < 1:23386262/67‑1 CCGCTTTCGCCGCAGCGTAGTTGGCCTGACCGCCATTTCCCATGGTACCAACCACAGAACCGATAGT < 1:21208824/67‑1 CCGCTTTCGCCGCAGCGTAGTTGGCCTGACCGCCATTTCCCATGGTACCAACCACAGAACCGATAGT < 1:19695375/67‑1 CCGCTTTCGCCGCAGCGTAGTTGGCCTGACCGCCATTTCCCATGGTACCAACCACAGAACCGATAGT < 1:24992157/67‑1 CCGCTTTCGCCGCAGCGTAGTTGGCCTGACCGCCATTTCCCATGGTACCAACCACAGAACCGATAGT < 1:4101221/67‑1 CCGCTTTCGCCGCAGCGTAGTTGGCCTGACCGCCATTTCCCATGGTACCAACCACAGAACCGATAGT < 1:25753878/67‑1 CCGCTTTCGCCGCAGCGTAGTTGGCCTGACCGCCATTTCCCATGGTACCAACCACAGAACCGATAGT < 1:17545612/67‑1 CCGCTTTCGCCGCAGCGTAGTTGGCCTGACCGCCATTTCCCATGGTACCAACCACAGAACCGATAGT < 1:33019167/67‑1 CCGCTTTCGCCGCAGCGTAGTTGGCCTGACCGCCATTTCCCATGGTACCAACCACAGAACCGATAGT < 1:5679641/67‑1 CCGCTTTCGCCGCAGCGTAGTTGGCCTGACCGCCATTTCCCATGGTACCAACCACAGAACCGATAGT < 1:27409549/67‑1 CCGCTTTCGCCGCAGCGTAGTTGGCCTGACCGCCATTTCCCATGGTACCAACCACAGAACCGATAGT < 1:15660129/67‑1 CCGCTTTCGCCGCAGCGTAGTTGGCCTGACCGCCATTTCCCATGGTACCAACCACAGAACCGATAGT < 1:13312634/67‑1 CCGCTTTCGCCGCAGCGTAGTTGGCCTGACCGCCATTTCCCATGGTACCAACCACAGAACCGATAGT < 1:28873362/67‑1 CCGCTTTCGCCGCAGCGTAGTTGGCCTGACCGCCATTTCCCATGGTACCAACCACAGAACCGATAGT < 1:31024890/67‑1 CCGCTTTCGCCGCAGCGTAGTTGGCCTGACCGCCATTTCCCATGGTACCAACCACAGAACCGATAGT < 1:29199910/67‑1 CCGCTTTCGCCGCAGCGTAGTTGGCCTGACCGCCATTTCCCATGGTACCAACCACAGAACCGATAGT < 1:12323935/67‑1 CCGCTTTCGCCGCAGCGTAGTTGGCCTGACCGCCATTTCCCATGGTACCAACCACAGAACCGATAGT < 1:29802160/67‑1 TTTCTCAGCAGCGTATTTGGCCTGACCGCCATTTCCCATTTTACCAACCACAGAACCGATAGTGATAA < 1:38564307/68‑1 TTTCGCGGCCGATTAGTTGGCCTGACCGCCATTTCCCATGGTACCAACCACAGAACCGATAGTGATA < 1:29922920/67‑1 TTTCGCCGCAGCGTAGTTGGCCTGACCGCCATTTCCCATGGTACCAACCACAGAACCGATAGTGATAA > 1:34492011/1‑68 TTTCGCCGCAGCGTAGTTGGCCTGACCGCCATTTCCCATGGTACCAACCACAGAACCGATAGTGATA < 1:17370300/67‑1 TTTCGCCGCAGCGTAGTTGGCCTGACCGCCATTTCCCATGGTACCAACCACAGAACCGATAGTGATA < 1:11074423/67‑1 TTTCGCCGCAGCGTAGTTGGCCTGACCGCCATTTCCCATGGTACCAACCACAGAACCGATAGTGATA < 1:29744561/67‑1 TTTCGCCGCAGCGTAGTTGGCCTGACCGCCATTTCCCATGGTACCAACCACAGAACCGATAGTGATA < 1:7875545/67‑1 TTTCGCCGCAGCGTAGTTGGCCTGACCGCCATTTCCCATGGTACCAACCACAGAACCGATAGTGATA < 1:15397350/67‑1 TTTCGCCGCAGCGTAGTTGGCCTGACCGCCATTTCCCATGGTACCAACCACAGAACCGATAGTGATA < 1:6426220/67‑1 TTTCGCCGCAGCGTAGTTGGCCTGACCGCCATTTCCCATGGTACCAACCACAGAACCGATAGTGATA < 1:16517331/67‑1 TTTCGCCGCAGCGTAGTTGGCCTGACCGCCATTTCCCATGGTACCAACCACAGAACCGATAGTGATA < 1:27188856/67‑1 TTTCGCCGCAGCGTAGTTGGCCTGACCGCCATTTCCCATGGTACCAACCACAGAACCGATAGTGATA < 1:24611751/67‑1 TTTCGCCGCAGCGTAGTTGGCCTGACCGCCATTTCCCATGGTACCAACCACAGAACCGATAGTGATA < 1:35481306/67‑1 TTTCGCCGCAGCGTAGTTGGCCTGACCGCCATTTCCCATGGTACCAACCACAGAACCGATAGTGATA < 1:38262260/67‑1 TTTCGCCGCAGCGTAGTTGGCCTGACCGCCATTTCCCATGGTACCAACCACAGAACCGATAGTGATA < 1:23682386/67‑1 TTTCGCCGCAGCGTAGTTGGCCTGACCGCCATTTCCCATGGTACCAACCACAGAACCGATAGTGATA < 1:37291471/67‑1 TTCGCCGCAGCGTAGTTGGCCTGACCGCCATTTCCCATGGTACCAACCACAGAACCGATAGTGATAAT < 1:26155443/68‑1 TTCGCCGCAGCGTAGTTGGCCTGACCGCCATTTCCCATGGTACCAACCACAGAACCGATAGTGATAAT < 1:21908056/68‑1 TCGCCGCAGCGTAGTTGGCCTGACCGCCATTTCCCATGGTACCAACCACAGAACCGATAGTGATAATA < 1:7324181/68‑1 GCCGCAGCGTAGTTGGCCTGACCGCCATTTCCCATGGTACCAACCACAGCACCGATAGTGATAATAC > 1:28588277/1‑67 CCGCAGCGTAGTTGGCCTGACCGCCATTTCCCATGGTACCAACCACAGAACCGATAGTGATAATACG > 1:3942526/1‑67 CCGCAGCGTAGTTGGCCTGACCGCCATTTCCCATGGTACCAACCACAGAACCGATAGTGATAATACG > 1:37708054/1‑67 CCGCAGCGTAGTTGGCCTGAACGCCATTTCCCATGGTACCAACCACAGAACCGATAGTGATAATACG > 1:22250985/1‑67 CGCAGCGTAGTTGGCCTGACCGCCATTTCCCATGGTACCAACCACAGAACCGATAGTGATAATACGAC < 1:31392483/68‑1 CGCAGCGTAGTTGGCCTGACCGCCATTTCCCATGGTACCAACCACAGAACCGATAGTGATAATACGA > 1:3150534/1‑67 ACATCATCTGCACGAACATCCCTTCCACCTGACGGGCCACCGGACGGATATTTGCCGCCGGATCTTCGCCCGCTTTCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/1132971‑1132892‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccgctttcgccGCAGCGTAGTTGGCCTGACCGCCATTTCCCATGGTACCAACCACAGAACCGATAGTGATAATACGAC < CP009273/1146583‑1146517 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |