| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 1132892 = | 323 (0.680) | 28 (0.080) | 17/86 | NT | 7.6% | coding (66/942 nt) | flgJ | flagellar rod assembly protein and murein hydrolase; flagellum‑specific muramidase |
| ? | CP009273 | = 1146583 | 437 (1.200) | coding (458/735 nt) | fabG | 3‑oxoacyl‑[acyl‑carrier‑protein] reductase | |||||
Only 100 of 681 total aligned reads displayed.
GGTCGTATTATCACTATCGGTTCTGTGGTTGGTACCATGGGAAATGGCGGTCAGGCCAACTACGCTGCGGCGAAAGCGGGCTTGATCGGCTTCAGTAAATCACTGGCGCGCGAAGTTGCGTCACGCGGTATTAC > CP009273/1146516‑1146649 | cGTATTATCACTATCGGTTCTGTGGTTGGTACCATGGGAAATGGCGGTCAGGCCAACTACGCTGCgg > 1:20724152‑M2/1‑65 (MQ=255) tattatCACTATCGGTTCTGTGGTTGGTACCATGGGAAATGGCGGTCAGGCCAACTACGCTGCggcga < 1:7735356‑M2/68‑6 (MQ=255) tatCACTATCGGTTCTGTGGTTGGTACCATGGGAAATGGCGGTCAGGCCAACTACGCTGCggcgaaa < 1:18191033‑M2/67‑8 (MQ=255) tatCACTATCGGTTCTGTGGTTGGTACCATGGGAAATGGCGGTCAGGCCAACTACGCTGCggcgaaa < 1:38306886‑M2/67‑8 (MQ=255) tatCACTATCGGTTCTGTGGTTGGTACCATGGGAAATGGCGGTCAGGCCAACTACGCTGCggcgaaa < 1:26360136‑M2/67‑8 (MQ=255) tatCACTATCGGTTCTGTGGTTGGTACCATGGGAAATGGCGGTCAGGCCAACTACGCTGCggcgaaa < 1:24611751‑M2/67‑8 (MQ=255) tatCACTATCGGTTCTGTGGTTGGTACCATGGGAAATGGCGGTCAGGCCAACTAATCGGCcgcgaaa < 1:29922920‑M2/67‑8 (MQ=255) atCACTATCGGTTCTGTGGTTGGTACCATGGGAAATGGCGGTCAGGCCAACTACGCTGCggcgaaagc > 1:30433835‑M2/1‑59 (MQ=255) cACTATCGGTTCTGTGGTTGGTACCATGGGAAATGGCGGTCAGGCCAACTACGCTGCggcgaaagcgg < 1:31926224‑M2/68‑12 (MQ=255) cACTATCGGTTCTGTGGTTGGTACCATGGGAAATGGCGGTCAGGCCAACTACGCTGCggcgaaagcgg < 1:35316119‑M2/68‑12 (MQ=255) aCTATCGGTTCTGTGGTTGGTACCATGGGAAATGGCGGTCAGGCCAACTACGCTGCggcgaaagcggg > 1:8041806‑M2/1‑56 (MQ=255) aCTATCGGTTCTGTGGTTGGTACCATGGGAAATGGCGGTCAGGCCAACTACGCTGCggcgaaagcggg > 1:27293788‑M2/1‑56 (MQ=255) aCTATCGGTTCTGTGGTTGGTACCATGGGAAATGGCGGTCAGGCCAACTACGCTGCggcgaaagcggg > 1:37234027‑M2/1‑56 (MQ=255) aCTATCGGTTCTGTGGTTGGTACCATGGGAAATGGCGGTCAGGCCAACTACGCTGCggcgaaagcgg < 1:23823694‑M2/67‑12 (MQ=255) aCTATCGGTTCTGTGGTTGGTACCATGGGAAATGGCGGTCAGGCCAACTACGCTGCggcgaaagcgg < 1:29755134‑M2/67‑12 (MQ=255) aCTATCGGTTCTGTGGTTGGTACCATGGGAAATGGCGGTCAGGCCAACTACGCTGCggcgaaagcgg < 1:24992157‑M2/67‑12 (MQ=255) aCTATCGGTTCTGTGGTTGGTACCATGGGAAATGGCGGTCAGGCCAACTACGCTGCggcgaaagcgg < 1:4036212‑M2/67‑12 (MQ=255) aCTATCGGTTCTGTGGTTGGTACCATGGGAAATGGCGGTCAGGCCAACTACGCTGCggcgaaagcgg < 1:6074834‑M2/67‑12 (MQ=255) aCTATCGGTTCTGTGGTTGGTACCATGGGAAATGGCGGTCAGGCCAACTACGCTGCggcgaaagcgg < 1:12323935‑M2/67‑12 (MQ=255) aCTATCGGTTCTGTGGTTGGTACCATGGGAAATGGCGGTCAGGCCAACTACGCTGCggcgaaagcgg < 1:25753878‑M2/67‑12 (MQ=255) aCTATCGGTTCTGTGGTTGGTACCATGGGAAATGGCGGTCAGGCCAACTACGCTGCggcgaaagcgg < 1:26195484‑M2/67‑12 (MQ=255) tATCGGTTCTGTGGTTGGTACCATGGGAAATGGCGGTCAGGCCAACTACGCTGCGGCGAAAGCGGGCt > 1:15942358/1‑68 (MQ=255) aTCGGTTCTGTGGTTGGTACCATGGGAAATGGCGGTCAGGCCAACTACGCTGCGGCGAAAGCGGGCtt > 1:23459274/1‑68 (MQ=255) tCGGTTCTGTGGTTGGTACCATGGGAAATGGCGGTCAGGCCAACTACGCTGCGGCGAAAGCGGGCTTg > 1:12119780/1‑68 (MQ=255) tCGGTTCTGTGGTTGGTACCATGGGAAATGGCGGTCAGGCCAACTACGCTGCGGCGAAAGCGGGCTTg > 1:10722899/1‑68 (MQ=255) cGGTTCTGTGGTTGGTACCATGGGAAATGGCGGTCAGGCCAACTACGCTGCGGCGAAAGCGGGCTTGa > 1:19434844/1‑68 (MQ=255) ggTTCTGTGGTTGGTACCATGGGAAATGGCGGTCAGGCCAACTACGCTGCGGCGAAAGCGGGCTTGa > 1:35020867/1‑67 (MQ=255) ggTTCTGTGGTTGGTACCATGGGAAATGGCGGTCAGGCCAACTACGCTGCGGCGAAAGCGGGCTTGAt < 1:39075915/68‑1 (MQ=255) ttCTGTGGTTGGTACCATGGGAAATGGCGGTCAGGCCAACTACGCTGCGGCGAAAGCGGGCTTGATCg > 1:29521674/1‑68 (MQ=255) tCTGTGGTTGGTACCATGGGAAATGGCGGTCAGGCCAACTACGCTGCggcgaaagcgggcgaagatcc < 1:28830321‑M2/68‑22 (MQ=255) tCTGTGGTTGGTACCATGGGAAATGGCGGTCAGGCCAACTACGCTGCGGCGAAAGCGGGCTTGATCgg < 1:14648526/68‑1 (MQ=255) cTGTGGTTGGTACCATGGGAAATGGCGGTCAGGCCAACTACGCTGCGGCGAAAGCGGGCTTGATCg > 1:21631606/1‑66 (MQ=255) cTGTGGTTGGTACCATGGGAAATGGCGGTCAGGCCAACTACGCTGCGGCGAAAGCGGGCTTGATCGGc < 1:759919/68‑1 (MQ=255) cTGTGGTTGGTACCATGGGAAATGGCGGTCAGGCCAACTACGCTGCGGCGAAAGCGGGCTTGATCGGc < 1:11915708/68‑1 (MQ=255) ggttggtACCATGGGAAATGGCGGTCAGGCCAACTACGCTGCGGCGAAAGCGGGCTTGATCGGCTTCa < 1:31465239/68‑1 (MQ=255) ggttggtACCATGGGAAATGGCGGTCAGGCCAACTACGCTGCGGCGAAAGCGGGCTTGATCGGCTTCa < 1:2412993/68‑1 (MQ=255) ggttggtACCATGGGAAATGGCGGTCAGGCCAACTACGCTGCGGCGAAAGCGGGCTTGATCGGCTTCa > 1:33897271/1‑68 (MQ=255) ggttggtACCATGGGAAATGGCGGTCAGGCCAACTACGCTGCGGCGAAAGCGGGCTTGATCGGCTTCa > 1:13911945/1‑68 (MQ=255) ggttggtACCATGGGAAATGGCGGTCAGGCCAACTACGCTGCGGCGAAAGCGGGCTTGATCGGCTTCa > 1:36916447/1‑68 (MQ=255) ttggtACCATGGGAAATGGCGGTCAGGCCAACTACGCTGCGGCGAAAGCGGGCTTGATCGGCTTCAg < 1:32065512/67‑1 (MQ=255) ttggtACCATGGGAAATGGCGGTCAGGCCAACTACGCTGCGGCGAAAGCGGGCTTGATCGGCTTCAGt > 1:31128271/1‑68 (MQ=255) tggtACCATGGGAAATGGCGGTCAGGCCAACTACGCTGCGGCGAAAGCGGGCTTGATCGGCTTCAGTa > 1:2655411/1‑68 (MQ=255) gggtACCATGGGAAATGGCGGGCAGGCCAACTACGCTGCGGCGAAAGCGGGCTTGATCGGCTTCAGt < 1:33727516/66‑1 (MQ=255) gtACCATGGGAAATGGCGGTCAGGCCAACTACGCTGCggcgaaagcgggcgaagatccggcggcaaat < 1:16718719‑M2/68‑32 (MQ=255) tACCATGGGAAATGGCGGTCAGGCCAACTACGCTGCGGCGAAAGCGGGCTTGATCGGCTTCAGTaaa < 1:18915186/67‑1 (MQ=255) aCCATGGGAAATGGCGGTCAGGCCAACTACGCTGCGGCGAAAGCGGGCTTGATCGGCTTCAGTAAATc < 1:24927358/68‑1 (MQ=255) aCCATGGGAAATGGCGGTCAGGCCAACTACGCTGCGGCGAAAGCGGGCTTGATCGGCTTCAGTAAATc > 1:21963222/1‑68 (MQ=255) aTGGGAAATGGCGGCCAGGCCAACTCCGCTGCGGCGAACGCGGGCTTGATCGGCTTCAGTAAATCACt < 1:28554420/68‑1 (MQ=255) gggAAATGGCGGTCAGGCCAACTACGCTGCGGCGAAAGCGGGCTTGATCGGCTTCAGTAAATCACTg > 1:38722987/1‑67 (MQ=255) gggAAATGGCGGTCAGGCCAACTACGCTGCGGCGAAAGCGGGCTTGATCGGCTTCAGTAAATCACTg > 1:5199955/1‑67 (MQ=255) gggAAATGGCGGTCAGGCCAACTACGCTGCGGCGAAAGCGGGCTTGATCGGCTTCAGTAAATCACTg > 1:30825494/1‑67 (MQ=255) gggAAATGGCGGTCAGGCCAACTACGCTGCGGCGAAAGCGGGCTTGATCGGCTTCAGTAAATCACTg > 1:34384099/1‑67 (MQ=255) gggAAATGGCGGTCAGGCCAACTACGCTGCGGCGAAAGCGGGCTTGATCGGCTTCACTAAATCACtt > 1:28060728/1‑66 (MQ=255) gAAATGGCGGTCAGGCCAACTACGCTGCggcgaaagcgggcgaagatccggcggcaaatatccgtccg < 1:18599361‑M2/68‑41 (MQ=255) ggCGGTCAGGCCAACTACGCTGCggcgaaagcgggcgaagatccggcggcaaatatccgtccggtgg < 1:21061071‑M2/67‑45 (MQ=255) gCGGTCAGGCCAACTACGCTGCGGCGAAAGCGGGCTTGATCGGCTTCAGTAAATCACTGGCGCGCGaa > 1:39399979/1‑68 (MQ=255) cGGTCAGGCCAACTACGCTGCGGCGAAAGCGGGCTTGATCGGCTTCAGTAAATCACTGGCGCGCGaa < 1:27588996/67‑1 (MQ=255) gggcAGGCCAACTACGCTGCGGCGAAAGCGGGCTTGATCGGCTTCAGTAAATCACTGGCGCGCGAAGt < 1:18398103/65‑1 (MQ=255) ggTCAGGCCAACTACGCTGCGGCGAAAGCGGGCTTGATCGGCTTCAGTAAATCACTGGCGCGCGAAGt < 1:38155140/68‑1 (MQ=255) tCAGGCCAACTACGCTGCggcgaaagcgggcgaagatccggcggcaaatatccgtccggtggcccgt > 1:1166846‑M2/1‑18 (MQ=255) cAGGCCAACTACGCTGCGGCGAAAGCGGGCTTGATCGGCTTCAGTAAATCACTGGCGCGCGAAGTTGc < 1:33195065/68‑1 (MQ=255) aaCTACGCTGCGGCGAAAGCGGGCTTGATCGGCTTCAGTAAATCACTGGCGCGCGAACTTGCGTCAcg < 1:29115464/68‑1 (MQ=255) cTACGCTGCGGCGAAAGCGGGCTTGATCGGCTTCAGTAAATCACTGGCGCGCGAAGTTGCGTCAcgcg < 1:9121066/68‑1 (MQ=255) cTACGCTGCGGCGAAAGCGGGCTTGATCGGCTTCAGTAAATCACTGGCGCGCGAAGTTGCGTCAcgcg < 1:5875162/68‑1 (MQ=255) cTACGCTGCGGCGAAAGCGGGCTTGATCGGCTTCAGTAAATCACTGGCGCGCGAAGTTGCGTCAcgcg < 1:2540359/68‑1 (MQ=255) cTACGCTGCGGCGAAAGCGGGCTTGATCGGCTTCAGTAAATCACTGGCGCGCGAAGTTGCGTCAcgcg < 1:5636876/68‑1 (MQ=255) tACGCTGCGGCGAAAGCGGGCTTGATCGGCTTCAGTAAATCACTGGCGCGCGAAGTTGCGTCACGCgg > 1:4302215/1‑68 (MQ=255) tACGCTGCGGCGAAAGCGGGCTTGATCGGCTTCAGTAAATCACTGGCGCGCGAAGTTGCGTCACGCgg > 1:28225593/1‑68 (MQ=255) aCGCTGCGGCGAAAGCGGGCTTGATCGGCTTCAGTAAATCACTGGCTCGCGAAGTTGCGTCACGCGGt < 1:32510623/68‑1 (MQ=255) aCGCTGCGGCGAAAGCGGGCTTGATCGGCTTCAGTAAATCACTGGCGCGCGAAGTTGCGTCACGCGGt < 1:4868196/68‑1 (MQ=255) aCGCTGCGGCGAAAGCGGGCTTGATCGGCTTCAGTAAATCACTGGCGCGCGAAGTTGCGTCACGCGGt < 1:6465842/68‑1 (MQ=255) aCGCTGCGGCGAAAGCGGGCTTGATCGGCTTCAGTAAATCACTGGCGCGCGAAGTTGCGTCACGCGGt < 1:37760763/68‑1 (MQ=255) aCGCTGCGGCGAAAGCGGGCTTGATCGGCTTCAGTAAATCACTGGCGCGCGAAGTTGCGTCACGCGGt < 1:7308960/68‑1 (MQ=255) aCGCTGCGGCGAAAGCGGGCTTGATCGGCTTCAGTAAATCACTGGCGCGCGAAGTTGCGTCACGCGGt < 1:9586489/68‑1 (MQ=255) aCGCTGCGGCGAAAGCGGGCTTGATCGGCTTCAGTAAATCACTGGCGCGCGAAGTTGCGTCACGCGGt < 1:37561172/68‑1 (MQ=255) aCGCTGCGGCGAAAGCGGGCTTGATCGGCTTCAGTAAATCACTGGCGCGCGAAGTTGCGTCACGCGGt < 1:10053983/68‑1 (MQ=255) aCGCTGCGGCGAAAGCGGGCTTGATCGGCTTCAGTAAATCACTGGCGCGCGAAGTTGCGTCACGCGGt < 1:22415877/68‑1 (MQ=255) aCGCTGCGGCGAAAGCGGGCTTGATCGGCTTCAGTAAATCACTGGCGCGCGAAGTTGCGTCACGCGGt < 1:15445331/68‑1 (MQ=255) aCGCTGCGGCGAAAGCGGGCTTGATCGGCTTCAGTAAATCACTGGCGCGCGAAGTTGCGTCACGCGGt < 1:1578070/68‑1 (MQ=255) aCGCTGCGGCGAAAGCGGGCTTGATCGGCTTCAGTAAATCACTGGCGCGCGAAGTTGCGTCACGCGGt < 1:13598670/68‑1 (MQ=255) aCGCTGCGGCGAAAGCGGGCTTGATCGGCTTCAGTAAATCACTGGCGCGCGAAGTTGCGTCACGCGGt < 1:17274627/68‑1 (MQ=255) aCGCTGCGGCGAAAGCGGGCTTGATCGGCTTCAGTAAATCACTGGCGCGCGAAGTTGCGTCACGCGGt < 1:17533568/68‑1 (MQ=255) aCGCTGCGGCGAAAGCGGGCTTGATCGGCTTCAGTAAATCACTGGCGCGCGAAGTTGCGTCACGCGGt < 1:36464910/68‑1 (MQ=255) aCGCTGCGGCGAAAGCGGGCTTGATCGGCTTCAGTAAATCACTGGCGCGCGAAGTTGCGTCACGCGGt < 1:13276925/68‑1 (MQ=255) aCGCTGCGGCGAAAGCGGGCTTGATCGGCTTCAGTAAATCACTGGCGCGCGAAGTTGCGTCACGCGGt < 1:20197894/68‑1 (MQ=255) aCGCTGCGGCGAAAGCGGGCTTGATCGGCTTCAGTAAATCACTGGCGCGCGAAGTTGCGTCACGCGGt < 1:22895197/68‑1 (MQ=255) aCGCTGCGGCGAAAGCGGGCTTGATCGGCTTCAGTAAATCACTGGCGCGCGAAGTTGCGTCACGCGGt < 1:26823908/68‑1 (MQ=255) aCGCTGCGGCGAAAGCGGGCTTGATCGGCTTCAGTAAATCACTGGCGCGCGAAGTTGCGTCACGCGGt < 1:27029568/68‑1 (MQ=255) aCGCTGCGGCGAAAGCGGGCTTGATCGGCTTCAGTAAATCACTGGCGCGCGAAGTTGCGTCACGCGGt < 1:31607822/68‑1 (MQ=255) aCGCTGCGGCGAAAGCGGGCTTGATCGGCTTCAGTAAATCACTGGCGCGCGAAGTTGCGTCACGCGGt < 1:11084577/68‑1 (MQ=255) aCGCTGCGGCGAAAGCGGGCTTGATCGGCTTCAGTAAATCACTGGCGCGCGAAGTTGCGTCACGCGGt < 1:35683280/68‑1 (MQ=255) aCGCTGCGGCGAAAGCGGGCTTGATCGGCTTCAGTAAATCACTGGCGCGCGAAGTTGCGTCACGCGGt < 1:10414572/68‑1 (MQ=255) aCGCTGCGGCGAAAGCGGGCTGGATCGGCTGCAGTAACTCACTGGCGCGCGAAGTTGCGTCACGCGGt < 1:32788408/68‑1 (MQ=255) gCTGCGGCGAAAGCGGGCTTGATCGGCTTCAGTAAATCACTGGCGCGCGAAGTTGCGTCACGCGGTAt > 1:17836853/1‑68 (MQ=255) gCTGCGGCGAAAGCGGGCTTGATCGGCTTCAGTAAATCACTGGCGCGCGAAGTTGCGTCACGCGGTAt > 1:14999909/1‑68 (MQ=255) gCTGCGGCGAAAGCGGGCTTGATCGGCTTCAGTAAATCACTGGCGCGCGAAGTTGCGTCACGCGGTAt > 1:19810294/1‑68 (MQ=255) tGCGGCGAAAGCGGGCTTGATCGGCTTCAGTAAATCACTGGCGCGCGAAGTTGCGTCACGCGGTAtt > 1:16428448/1‑67 (MQ=255) tGCGGCGAAAGCGGGCTTGATCGGCTTCAGTAAATCACTGGCGCGCGAAGTTGCGTCACGCGGTAtt > 1:36165821/1‑67 (MQ=255) gcggcgAAAGCGGGCTTGATCGGCTTCAGTAAATCACTGGCGCGCGAAGTTGCGTCACGCGGTAtt > 1:8669771/1‑66 (MQ=255) gcggcgAAAGCGGGCTTGATCGGCTTCAGTAAATCACTGGCGCGCGAAGTTGCGTCACGCGGTAtt > 1:34689103/1‑66 (MQ=255) | GGTCGTATTATCACTATCGGTTCTGTGGTTGGTACCATGGGAAATGGCGGTCAGGCCAACTACGCTGCGGCGAAAGCGGGCTTGATCGGCTTCAGTAAATCACTGGCGCGCGAAGTTGCGTCACGCGGTATTAC > CP009273/1146516‑1146649 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |