| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 1132892 = | 323 (0.680) | 28 (0.080) | 17/86 | NT | 7.6% | coding (66/942 nt) | flgJ | flagellar rod assembly protein and murein hydrolase; flagellum‑specific muramidase |
| ? | CP009273 | = 1146583 | 437 (1.200) | coding (458/735 nt) | fabG | 3‑oxoacyl‑[acyl‑carrier‑protein] reductase | |||||
Only 100 of 541 total aligned reads displayed.
TGATGATCAGCGACAGCAAACTACTGGCAAGTGCGGCCTGGGATGCGCAATCACTCAACGAACTAAAGGCGAAAGCGGGCGAAGATCCGGCGGCAAATATCCGTCCGGTGGCCCGTCAGGTGGAAGGGATGTTCG > CP009273/1132825‑1132959 | gatgatCAGCGACAGCAAACTACTGGCAAGTGCGGCCTGGGATGCGCAATCACTCAACGAACTAAAgg < 1:30618844/68‑1 (MQ=255) tgatCAGCGACAGCAAACTACTGGCAAGTGCGGCCTGGGATGCGCAATCACTCAACGAACTAAAGGCg > 1:11379370/1‑68 (MQ=255) tgatCAGCGACAGCAAACTACTGGCAAGTGCGGCCTGGGATGCGCAATCACTCAACGAACTAAAGGCg > 1:28419326/1‑68 (MQ=255) tCAGCGACAGCAAACTACTGGCAAGTGCGGCCTGGGATGCGCAATCACTCAACGAACTAAAGGCGaaa > 1:327925/1‑68 (MQ=255) tatcactatcggttctgtggttggtaccatgggaaatggcggtcaggccaactacgctgcGGCGaaa < 1:29744561‑M1/7‑1 (MQ=255) tatcactatcggttctgtggttggtaccatgggaaatggcggtcaggccaactacgctgcGGCGaaa < 1:7875545‑M1/7‑1 (MQ=255) tatcactatcggttctgtggttggtaccatgggaaatggcggtcaggccaactacgctgcGGCGaaa < 1:23682386‑M1/7‑1 (MQ=255) tatcactatcggttctgtggttggtaccatgggaaatggcggtcaggccaactacgctgcGGCGaaa < 1:37583514‑M1/7‑1 (MQ=255) tatcactatcggttctgtggttggtaccatgggaaatggcggtcaggccaactaatcggcCGCGaaa < 1:29922920‑M1/7‑1 (MQ=255) aGCGACAGCAAACTACTGGCAAGTGCGGCCTGGGATGCGCAATCACTCAACGAACTAAAGGCGAAAGc > 1:2226797/1‑68 (MQ=255) gACAGCAAACTACTGGCAAGTGCGGCCTGGGATGCGCAATCACTCAACGAACTAAAGGCGAAAGCggg < 1:36375752/68‑1 (MQ=255) gACAGCAAACTACTGGCAAGTGCGGCCTGGGATGCGCAATCACTCAACGAACTAAAGGCGAAAGCggg < 1:4419999/68‑1 (MQ=255) gACAGCAAACTACTGGCAAGTGCGGCCTGGGATGCGCAATCACTCAACGAACTAAAGGCGAAAGCggg < 1:18884959/68‑1 (MQ=255) gACAGCAAACTACTGGCAAGTGCGGCCTGGGATGCGCAATCACTCAACGAACTAAAGGCGAAAGCggg < 1:12127890/68‑1 (MQ=255) gACAGCAAACTACTGGCAAGTGCGGCCTGGGATGCGCAATCACTCAACGAACTAAAGGCGAAAGCggg < 1:38767140/68‑1 (MQ=255) gACAGCAAACTACTGGCAAGTGCGGCCTGGGATGCGCAATCACTCAACGAACTAAAGGCGAAAGCgg > 1:14058755/1‑67 (MQ=255) actatcggttctgtggttggtaccatgggaaatggcggtcaggccaactacgctgcGGCGAAAGCggg > 1:12525417‑M1/57‑68 (MQ=255) actatcggttctgtggttggtaccatgggaaatggcggtcaggccaactacgctgcGGCGAAAGCggg > 1:5141921‑M1/57‑68 (MQ=255) actatcggttctgtggttggtaccatgggaaatggcggtcaggccaactacgctgcGGCGAAAGCgg < 1:23386262‑M1/11‑1 (MQ=255) actatcggttctgtggttggtaccatgggaaatggcggtcaggccaactacgctgcGGCGAAAGCgg < 1:21208824‑M1/11‑1 (MQ=255) actatcggttctgtggttggtaccatgggaaatggcggtcaggccaactacgctgcGGCGAAAGCgg < 1:22916188‑M1/11‑1 (MQ=255) actatcggttctgtggttggtaccatgggaaatggcggtcaggccaactacgctgcGGCGAAAGCgg < 1:18566983‑M1/11‑1 (MQ=255) actatcggttctgtggttggtaccatgggaaatggcggtcaggccaactacgctgcGGCGAAAGCgg < 1:31024890‑M1/11‑1 (MQ=255) actatcggttctgtggttggtaccatgggaaatggcggtcaggccaactacgctgcGGCGAAAGCgg < 1:17545612‑M1/11‑1 (MQ=255) actatcggttctgtggttggtaccatgggaaatggcggtcaggccaactacgctgcGGCGAAAGCgg < 1:38205597‑M1/11‑1 (MQ=255) actatcggttctgtggttggtaccatgggaaatggcggtcaggccaactacgctgcGGCGAAAGCgg < 1:25753878‑M1/11‑1 (MQ=255) actatcggttctgtggttggtaccatgggaaatggcggtcaggccaactacgctgcGGCGAAAGCgg < 1:13626538‑M1/11‑1 (MQ=255) actatcggttctgtggttggtaccatgggaaatggcggtcaggccaactacgctgcGGCGAAAGCgg < 1:12323935‑M1/11‑1 (MQ=255) actatcggttctgaggtaggtaccatgggaaatgccggtcaggccaactacgctgcCGCGAAAGCgg < 1:24748320‑M1/11‑1 (MQ=255) actaccggttctgtggttggtaccatgggaaatggcggtcaggccaactacgctgcGGCGAAAGCggg > 1:27141012‑M1/57‑68 (MQ=255) cAAACTACTGGCAAGTGCGGCCTGGGATGCGCAATCACTCAACGAACTAAAGGCGAAAGCGGGCGAAg > 1:13274695/1‑68 (MQ=255) ggttctgtggttggtaccatgggaaatggcggtcaggccaactacgctgcGGCGAAAGCGGGCGAAGa < 1:3516876‑M1/18‑1 (MQ=255) aaaCTACTGGCAAGTGCGGCCTGGGATGCGCAATCACTCAACGAACTAAAGGCGAAAGCGGGCg < 1:31763889/64‑1 (MQ=255) aaCTACTGGCAAGTGCGGCCTGGGATGCGCAATCACTCAACGAACTAAAGGCGAAAGCGGGCGAAGAt < 1:20869481/68‑1 (MQ=255) aaCTACTGGCAAGTGCGGCCTGGGATGCGCAATCACTCAACGAACTAAAGGCGAAAGCGGGCGAAGAt < 1:30208775/68‑1 (MQ=255) tctgtggttggtaccatgggaaatggcggtcaggccaactacgctgcGGCGAAAGCGGGCGAAGATcc < 1:28830321‑M1/21‑1 (MQ=255) actGGCAAGTGCGGCCTGGGATGCGCAATCACTCAACGAACTAAAGGCGAAAGCGGGCGAAGATCcg > 1:28267329/1‑67 (MQ=255) ggCAAGTGCGGCCTGGGATGCGCAATCACTCAACGAACTAAAGGCGAAAGCGGGCGAAGATCcggcg > 1:21772284/1‑67 (MQ=255) ggCAAGTGCGGCCTGGGATGCGCAATCACTCAACGAACTAAAGCCGAAAGCGGGCGAAGAACcggcg > 1:33351783/1‑67 (MQ=255) cAAGTGCGGCCTGGGATGCGCAATCACTCAACGAACTAAAGGCGAAAGCGGGCGAAGATCCggcggc < 1:21547802/67‑1 (MQ=255) cAAGTGCGGCCTGGGATGCGCAATCACTCAACGAACTAAAGGCGAAAGCGGGCGAAGATCCggcggc < 1:24296575/67‑1 (MQ=255) cAAGTGCGGCCTGGGATGCGCAATCACTCAACGAACTAAAGGCGAAAGCGGGCGAAGATCCggcggc < 1:20367742/67‑1 (MQ=255) cAAGTGCGGCCTGGGATGCGCAATCACTCAACGAACTAAAGGCGAAAGCGGGCGAAGATCCGGCGGCa > 1:24069183/1‑68 (MQ=255) cAAGTGCGGCCTGGGATGCGCAATCACTCAACGAACTAAAGGCGAAAGCGGGCGAAGATCCGGCGGCa > 1:26169762/1‑68 (MQ=255) cAAGTGCGGCCTGGGATGCGCAATCACTCAACGAACTAAAGGCGAAAGCGGGCGAAGATCCGGCGGCa > 1:8411060/1‑68 (MQ=255) cAAGTGCGGCCTGGGATGCGCAATCACTCAACGAACTAAAGGCGAAAGCGGGCGAAGATCCGGCGGCa > 1:1092821/1‑68 (MQ=255) cAAGTGCGGCCTGGGATGCGCAATCACTCAACGAACTAAAGGCGAAAGCGGGCGAAGATCCGGCGGCa > 1:34329458/1‑68 (MQ=255) cAAGTGCGGCCGGGGATGCGCAATCACTCAACGAACTAAAGGCGAAAGCGGGCGAAGATCCggcggc < 1:4125038/67‑1 (MQ=255) aaGTGCGGCCTGGGATGCGCAATCACTCAACGAACTAAAGGCGAAAGCGGGCGAAGATCCGGCGGCa < 1:14401337/67‑1 (MQ=255) aGTGCGGCCTGGGATGCGCAATCACTCAACGAACTAAAGGCGAAAGCGGGCGAAGATCCGGCGGCaaa > 1:33608793/1‑68 (MQ=255) gCGGCCTGGGATGCGCAATGACTCAACGAACTAAAGGCGAAAGCGGGCGAAGATCCGGCGGCAAata > 1:3256313/1‑67 (MQ=255) gCGGCCTGGGATGCGCAATCACTCAACGAACTAAAGGCGAAAGCGGGCGAAGATCCGGCGGCAAata > 1:27736518/1‑67 (MQ=255) accatgggaaatggcggtcaggccaactacgctgcGGCGAAAGCGGGCGAAGATCCGGCGGCAAata < 1:38355231‑M1/32‑1 (MQ=255) accatgggaaatggcggtcaggccaactacgctgcGGCGAAAGCGGGCGAAGATCCGGCGGCAAata < 1:17880564‑M1/32‑1 (MQ=255) ccTGGGATGCGCAATCACTCAACGAACTAAAGGCGAAAGCGGGCGAAGATCCGGCGGCAAATAtccg > 1:23819419/1‑67 (MQ=255) gggaaatggcggtcaggccaactacgctgcGGCGAAAGCGGGCGAAGATCCGGCGGCAAATAtccgt < 1:1827510‑M1/37‑1 (MQ=255) cTGGGATGCGCAATCACTCAACGAACTAAAGGCGAAAGCGGGCGAAGATCCGGCGGCAAATAtccgt < 1:16178566/67‑1 (MQ=255) aaatggcggtcaggccaactacgctgcGGCGAAAGCGGGCGAAGATCCGGCGGCAAATATCCGTCCgg < 1:9026681‑M1/41‑1 (MQ=255) gATGCGCAATCACTCAACGAACTAAAGGCGAAAGCGGGCGAAGATCCGGCGGCAAATATCCGTCCGGt > 1:2483309/1‑68 (MQ=255) gATGCGCAATCACTCAACGAACTAAAGGCGAAAGCGGGCGAAGATCCGGCGGCAAATATCCGTCCGGt > 1:29379595/1‑68 (MQ=255) gATGCGCAATCACTCAACGAACTAAAGGCGAAAGCGGGCGAAGATCCGGCGGCAAATATCCGTCCGGt > 1:5680624/1‑68 (MQ=255) gATGCGCAATCACTCAACGAACTAAAGGCGAAAGCGGGCGAAGATCCGGCGGCAAATATCCGTCCGGt > 1:5968993/1‑68 (MQ=255) gATGCGCAATCACTCAACGAACTAAAGGCGAAAGCGGGCGAAGATCCGGCGGCAAATATCCGTCCGGt > 1:14804721/1‑68 (MQ=255) gATGCGCAATCACTCAACGAACTAAAGGCGAAAGCGGGCGAAGATCCGGCGGCAAATATCCGTCCGGt > 1:10459990/1‑68 (MQ=255) tGCGCAATCACTCAACGAACTAAAGGCGAAAGCGGGCGAAGATCCGGCGGCAAATATCCGTCCGGTgg < 1:33738414/68‑1 (MQ=255) gcAATCACTCAACGAACTAAAGGCGAAAGCGGGCGAAGATCCGGCGGCAAATATCCGTCCGGTGGccc < 1:6259019/68‑1 (MQ=255) gcAATCACTCAACGAACTAAAGGCGAAAGCGGGCGAAGATCCGGCGGCAAATATCCGTCCGGTGGccc > 1:27521286/1‑68 (MQ=255) gcAATCACTCAACGAACTAAAGGCGAAAGCGGGCGAAGATCCGGCGGCAAATATCCGTCCGGTGGcc < 1:2925502/67‑1 (MQ=255) gcAATCACTCAACGAACTAAAGGCGAAAGCGGGCGAAGATCCGGCGGCAAATATCCGTCCGGTGGcc < 1:37237305/67‑1 (MQ=255) aaTCACTCAACGAACTAAAGGCGAAAGCGGGCGAAGATCCGGCGGCAAATATCCGTCCGGTGGCCCg < 1:36893362/67‑1 (MQ=255) tcaggccaactacgctgcGGCGAAAGCGGGCGAAGATCCGGCGGCAAATATCCGTCCGGTGGCCCGt > 1:1166846‑M1/19‑67 (MQ=255) tCACTCAACGAACTAAAGGCGAAAGCGGGCGAAGATCCGGCGGCAAATATCCGTCCGGTGGCCCGTCa > 1:31234979/1‑68 (MQ=255) cACTCAACGAACTAAAGGCGAAAGCGGGCGAAGATCCGGCGGCAAATATCCGTCCGGTGGCCCGTCAg < 1:39419524/68‑1 (MQ=255) aCTCAACGAACTAAAGGCGAAAGCGGGCGAAGATCCGGCGGCAAATATCCGTCCGGTGGCCCGTCAgg < 1:33063447/68‑1 (MQ=255) aCTCAACGAACTAAAGGCGAAAGCGGGCGAAGATCCGGCGGCAAATATCCGTCCGGTGGCCCGTCAgg < 1:12867786/68‑1 (MQ=255) cTCAACGAACTAAAGGCGAAAGCGGGCGAAGATCCGGCGGCAAATATCCGTCCGGTGGCCCGTCAGGt < 1:16978114/68‑1 (MQ=255) cTCAACGAACTAAAGGCGAAAGCGGGCGAAGATCCGGCGGCAAATATCCGTCCGGTGGCCCGTCAGGt < 1:10042489/68‑1 (MQ=255) cTCAACGAACTAAAGGCGAAAGCGGGCGAAGATCCGGCGGCAAATATCCGTCCGGTGGCCCGTCAGGt < 1:25959224/68‑1 (MQ=255) tCAACGAACTAAAGGCGAAAGCGGGCGAAGATCCGGCGGCAAATATCCGTCCGGTGGCCCGTCAGGTg < 1:26420208/68‑1 (MQ=255) tCAACGAACTAAAGGCGAAAGCGGGCGAAGATCCGGCGGCAAATATCCGTCCGGTGGCCCGTCAGGTg < 1:3168055/68‑1 (MQ=255) ccaactacgctgcGGCGAAAGCGGGCGAAGATCCGGCGGCAAATATCCGTCCGGTGGCCCGTCAgg > 1:31468886‑M1/14‑66 (MQ=255) aactaactAAAGGCGAAAGCGGGCGAAGATCCGGCGGCAAATATCCGGCCGGTGGCCCGTCAGGTGGa < 1:32356513/68‑1 (MQ=255) aaCGAACTAAAGGCGAAAGCGGGCGAAGATCCGGCGGCAAATATCCGTCCGGTGGCCCGTCAGGTGGa < 1:15944160/68‑1 (MQ=255) cGAACTAAAGGCGAAAGCGGGCGAAGATCCGGCGGCAAATATCCGTCCGGTGGCCCGTCAGGTGGAAg < 1:944214/68‑1 (MQ=255) cGAACTAAAGGCGAAAGCGGGCGAAGATCCGGCGGCAAATATCCGTCCGGTGGCCCGTCAGGTGGAAg < 1:7557557/68‑1 (MQ=255) cGAACTAAAGGCGAAAGCGGGCGAAGATCCGGCGGCAAATATCCGTCCGGTGGCCCGTCAGGTGGAAg < 1:39553465/68‑1 (MQ=255) cGAACTAAAGGCGAAAGCGGGCGAAGATCCGGCGGCAAATATCCGTCCGGTGGCCCGTCAGGTGGAAg < 1:2517223/68‑1 (MQ=255) aaCTAAAGGCGCAAGCGGGCGAAGATCCGGCGGCAAATATCCGTCCGGTGGCCCGTCAGGTGGAAggg > 1:6868571/1‑68 (MQ=255) aCTAAAGGCGAAAGCGGGCGAAGATCCGGCGGCAAATATCCGTCCGGTGGCCCGTCAGGTGGAAggg < 1:16658135/67‑1 (MQ=255) cTAAAGGCGAAAGCGGGCGAAGATCCGGCGGCAAATATCCGTCCGGTGGCCCGTCAGGTGGAAGGGAt > 1:15537249/1‑68 (MQ=255) cTAAAGGCGAAAGCGGGCGAAGATCCGGCGGCAAATATCCGTCCGGTGGCCCGTCAGGTGGAAGGGAt > 1:713339/1‑68 (MQ=255) cTAAAGGCGAAAGCGGGCGAAGATCCGGCGGCAAATATCCGTCCGGTGGCCCGTCAGGTGGAAGGGAt > 1:35820397/1‑68 (MQ=255) cTAAAGGCGAAAGCGGGCGAAGATCCGGCGGCAAATATCCGTCCGGTGGCCCGTCAGGTGGAAGGGAt > 1:27404703/1‑68 (MQ=255) tAAAGGCGAAAGCGGGCGAAGATCCGGCGGCAAATATCAGTCCGGTGGCCCGTCAGGTGGAAGGGATg < 1:19536072/68‑1 (MQ=255) tgcGGCGAAAGCGGGCGAAGATCCGGCGGCAAATATCCGTCCGGTGGCCCGTCAGGTGGAAGGGATGt < 1:22490951‑M1/65‑1 (MQ=255) tgcGGCGAAAGCGGGCGAAGATCCGGCGGCAAATATCCGTCCGGTGGCCCGTCAGGTGGAAGGGATGt > 1:25008042‑M1/4‑68 (MQ=255) aaaGGCGAAAGCGGGCGAAGATCCGGCGGCAAATATCCGTCCGGTGGCCCGTCAGGTGGAAGGGATGt > 1:19265495/1‑68 (MQ=255) aaGGCGAAAGCGGGCGAAGATCCGGCGGCAAATATCCGTCCGGTGGCCCGTCAGGTGGAAGGGATGtt < 1:1532815/68‑1 (MQ=255) GGCGAAAGCGGGCGAAGATCCGGCGGCAAATATCCGTCCGGTGGCCCGTCAGGTGGAAGGGATGTTCg < 1:5413654‑M1/68‑1 (MQ=255) GGCGAAAGCGGGCGAAGATCCGGCGGCAAATATCCGTCCGGTGGCCCGTCAGGTGGAAGGGATGTTCg < 1:37843948‑M1/68‑1 (MQ=255) | TGATGATCAGCGACAGCAAACTACTGGCAAGTGCGGCCTGGGATGCGCAATCACTCAACGAACTAAAGGCGAAAGCGGGCGAAGATCCGGCGGCAAATATCCGTCCGGTGGCCCGTCAGGTGGAAGGGATGTTCG > CP009273/1132825‑1132959 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |