| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 2298296 = | NA (NA) | 4 (0.010) | 4/98 | NT | 100% | noncoding (401/655 nt) | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences |
| ? | CP009273 | 2298427 = | 0 (0.000) | noncoding (532/655 nt) | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences | |||||
Only 100 of 177 total aligned reads displayed.
CCTTATCCGACCTACGGGGTGGAGCACTTCACAGCGGTGTAGGCCTGATAAGACGCGCCAGCGTCGCatcaggc‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/2298362‑2298296‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCAACATCTA > CP009273/2298427‑2298499 CCTTATCCGACCTACGGGGTGGAGCACTTCACAGCGGTGTAGGCCTGATAAGACGCGCCAGCGTCGCA > 1:24705916/1‑68CCTTATCCGACCTACGGGGTGGAGCACTTCACAGCGGTGTAGGCCTGATAAGACGCGCCAGCGTCGCA > 1:5992467/1‑68CCTTATCCGACCTACGGGGTGGAGCACTTCACAGCGGTGTAGCCCTGATAAGACGAGCCAGCGTAGCA > 1:15554364/1‑68 CTTATCCGACCTACGGGGTGGAGCACTTCACAGCGTTGTAGGCATGATAATACGCGCCAGCGTCGCAT > 1:20953464/1‑68 CTTATCCGACCTACGGGGTGGAGCACTTCACAGCGGTGTAGGCCTGATAAGACGCGCCAGCGTCGCA < 1:36695196/67‑1 CTTATCCGACCTACGGGGTGGAGCACTTCACAGCGGTGTAGGCCTGATAAGACGCGCCAGCGTCGCA < 1:35408609/67‑1 CTTATCCGACCTACGGGGTGGAGCACTTCACAGCGGTGTAGGCCTGATAAGACGCGCCAGCGTCGCA < 1:18768984/67‑1 CTTATCCGACCTACGGGGTGGAGCACTTCACAGCGGTGTAGGCCTGATAAGACGCGCCAGCGTCGCA > 1:20446641/1‑67 CTTATCCGACCTACGGGGTGGAGCACTTCACAGCGGTGTAGGCCTGATAAGACGCGCCAGCGTCGCA < 1:38184907/67‑1 CTTATCCGACCTACGGGGTGGAGCACTTCACAGCGGTGTAGGCCTGATAAGACGCGCCAGCGTCGCA < 1:8334747/67‑1 CTTATCCGACCTACGGGGTGGAGCACTTCACAGCGGTGTAGGCCTGATAAGACGCGCCAGCGTCGCA < 1:29737698/67‑1 CTTATCCGACCTACGGCGTGGAGCACTTCACAGCGGTGTAGGCCTGATAAGACGCGCCAGCGTCGCA < 1:21870998/67‑1 CTTATCCGACCGACGGGGTGGAGCACTTCACAGCGGGGTAGGCCTGATAAGACGCGCCAGCGTCGCA < 1:18725080/67‑1 CTTATCCCACCTACGGGGTGGAGCACTTCACAGCGGTGTAGGCCTGATAAGACGCGCCAGCGTCGCA < 1:28826704/67‑1 TTATCCGACCTACGGGGTGGAGCACTTCACAGCGGTGTAGGCCTGATAAGACGCGCCAGCGTCGCATC < 1:26740417/68‑1 TATCCGACCTACGGGGTGGAGCACTTCACAGCGGTTTAGGCCTGATAAGACGCGCCAGCGTCGCATC > 1:5918202/1‑67 TATCCGACCTACGGGGTGGAGCACTTCACAGCGGTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCA < 1:34604968/68‑1 TATCCGACCTACGGGGTGGAGCACTTCACAGCGGTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCA < 1:24357522/68‑1 TATCCGACCTACGGGGTGGAGCACTTCACAGCGGTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCA > 1:31706051/1‑68 TATCCGACCTACGGGGTGGAGCACTTCACAGCGGTGTAGGCCTGATAAGACGAGCCAGCGTCGCATCA > 1:34257115/1‑68 ATCCGACCTACGGGGTGGCGCACTTCACAGCGGTGTAGGCCTGTTAAGACGCGCCAGCGTCGCATCAG > 1:22243008/1‑68 ATCCGACCTACGGGGTGGAGCACTTCACAGCGGTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAG < 1:24897453/68‑1 ATCCGACCTACGGGGTGGAGCACTTCACAGCGGTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAG < 1:31989316/68‑1 ATCCGACCTACGGGGTGGAGCACTTCACAGCGGTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAG < 1:21635701/68‑1 ATCCGACCTACGGGGTGGAGCACTTCACAGCGGTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAG > 1:23620759/1‑68 ATCCGACCTACGGGGTGGAGCACTTCACAGCGGTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAG < 1:14977403/68‑1 TCCGACCTACGGGGTGGAGCACTTCACAGCGGTGTAGGCCTTATAAGAAGAGCCAGCGTCGCATCAG > 1:19514629/1‑67 TCCGACCTACGGGGTGGAGCACTTCACAGCGGTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGG < 1:185636/68‑1 TCCGACCTACGGGGTGGAGCACTTCACAGCGGTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAG > 1:2081386/1‑67 TCCGACCTACGGGGTGGAGCACTTCACAGCGGTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAG > 1:21833572/1‑67 TCCGACCTACGGGGTGGAGCACTTCACAGCGGTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAG > 1:13024204/1‑67 TCCGACCGACGGGGTGGAGCACTTCCCAGCGGTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGG < 1:24092919/68‑1 CCGACCTACGGGGTGGAGCACTTCACAGCTGTGTAGGCCTGATAAGACGCGACAGATTAGCATCAGGC > 1:31314847/1‑68 CCGACCTACGGGGTGGAGCACTTCACAGCGGTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGC > 1:18241646/1‑68 CCGACCTACGGGGTGGAGCACTTCACAGCGGTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGC > 1:33065777/1‑68 CCGACCTACGGGGTGGAGCACTTCACAGCGGTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGC > 1:38657662/1‑68 CCGACCTACGGGGTGGAGCACTTCACAGCGGTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGC > 1:6545076/1‑68 CCGACCTACGGGGTGGAGCACTTCACAGCGGTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGC > 1:32765783/1‑68 CCGACCTACGGGGTGGAGCACTTCACAGCGGTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGC < 1:14565689/68‑1 CCGACCTACGGGGTGGAGCACTTCACAGCGGTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGC > 1:5690737/1‑68 CCGACCTACGGGGTGGAGCACTTCACAGCGGTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGC > 1:495131/1‑68 CCGACCTACGGGGTGGAGCACTTCACAGCGGTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGC > 1:36011004/1‑68 CCGACCTACGGGGTGGAGCACTTCACAGCGGTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGC > 1:18129848/1‑68 CCGACCTACGGGGTGGAGCACTTCACAGCGGTGTAGGCCTGATAAGAAGCGCCAGAGTCGCATCAGGC > 1:30953996/1‑68 CCGACCTACGGGGTGGAGCACTTCACAGCGGTGTAGGCCAGATAAGAAGAGCCAGAGTCCCATCAGGC > 1:132032/1‑68 CCGACCTACGGGGTGGAGCACTTCACAGCGGTGTAGCCCTGATAAGACGAGCCAGCTTCGCATAAGGC > 1:4473406/1‑68 CCGACCTACGGGGTGGAGCACTTCACAGCGGTGAAGCCCTGATAAGACGCGCCAGCGTCGCATCAGGC > 1:33225469/1‑68 CCTACGGGGTGGAGCACTTCACAGCGGTGTAGGCCTGATAAGAAGCGACATAGTCGCATCAGGCCac > 1:38746620/1‑65 GGGGGGGAGCACTTCACAGCGGTGTAGGCCTGATAACACGCGCCAGCGTCGCATCAGGCCTACACCGC < 1:6354350/68‑1 GGTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCCTACCCCGCTGTGAAGTGCTCCCCCCCGT > 1:5669540/1‑68 AGACGCGCCAGCGTCGCATCAGGCCTACACCGCTGTGAAGTGCTCCCCCCCGTAGGTTGGTTAAGGCG > 1:36935492/1‑68 ATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCAAC < 1:12821665/68‑1 ATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCAAC < 1:22443804/68‑1 ATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCAAC < 1:19960737/68‑1 TCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCCACA > 1:27982331/1‑68 TCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCAACA > 1:8015308/1‑68 TCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCAACA < 1:28978574/68‑1 TCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCAACA > 1:17765744/1‑68 TCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCAACA > 1:30621077/1‑68 TCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCAACA > 1:16651421/1‑68 TCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCAACA > 1:38930372/1‑68 TCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCAACA > 1:16484996/1‑68 TCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTGGGAAAAGGCGGTTACGCCGCATCCAACA < 1:32381004/68‑1 TCAGGCCTACACCGCGGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCAACA < 1:39265996/68‑1 CAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCAACAT < 1:3605216/68‑1 CAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCAACA > 1:26346587/1‑67 CAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCAACA > 1:10181551/1‑67 CAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCAACA > 1:25221612/1‑67 CAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCAACA > 1:24678958/1‑67 CAGGCCTACACCGCTGTAAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCAACA > 1:23085829/1‑67 tGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCAACATC < 1:29779403/67‑1 cGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCAACATC < 1:16867364/67‑1 cGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCAACATC < 1:9721909/67‑1 AGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCAACA > 1:20271340/1‑66 GCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCAACCTCTA > 1:27491963/1‑68 GCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCAACATCTA > 1:26555263/1‑68 GCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCAACATCTA > 1:24878716/1‑68 GCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCAT < 1:12796425/58‑1 CCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCAACATCTA > 1:38382006/1‑67 CCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCAACATCTA > 1:38545834/1‑67 CCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCAACATCTA > 1:25660546/1‑67 CCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCAACATCTA > 1:30517526/1‑67 CCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCAACATCTA > 1:3029390/1‑67 CCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCAACATCTA > 1:12344827/1‑67 CCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCAACATCTA > 1:27796384/1‑67 CCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCAACATCTA > 1:12525313/1‑67 CCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCAACATCTA > 1:23054733/1‑67 CCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCAACATCTA > 1:17646200/1‑67 CCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCAACATCTA > 1:3487813/1‑67 CCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCAACATCTA > 1:13520825/1‑67 CCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCAACATCTA > 1:15683/1‑67 CCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCAACATCTA > 1:154120/1‑67 CCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCAACATCTA > 1:14677839/1‑67 CCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCAACATCT < 1:13574541/66‑1 CCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCAACATC < 1:16489132/65‑1 CCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCAACATC < 1:10823975/65‑1 CCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCAACATC < 1:15960929/65‑1 CCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCAACATC < 1:2461096/65‑1 CCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCAACATC < 1:34500173/65‑1 CCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCAACAT < 1:27932141/64‑1 CCTTATCCGACCTACGGGGTGGAGCACTTCACAGCGGTGTAGGCCTGATAAGACGCGCCAGCGTCGCatcaggc‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/2298362‑2298296‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCAACATCTA > CP009273/2298427‑2298499 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |