| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 2298296 = | NA (NA) | 4 (0.010) | 4/98 | NT | 100% | noncoding (401/655 nt) | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences |
| ? | CP009273 | 2298427 = | 0 (0.000) | noncoding (532/655 nt) | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences | |||||
Only 100 of 526 total aligned reads displayed.
ACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCG‑GTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCA > CP009273/2298230‑2298343 | aCCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCG‑GTTGCCTGATGc > 1:3253229/1‑68 (MQ=255)aCCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCG‑GTTGCCTGATGc > 1:17581411/1‑68 (MQ=255)aCCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCG‑GTTGCCTGATGc > 1:37535331/1‑68 (MQ=255) cccGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCG‑GTTGCCTGATGCg > 1:3694624/1‑67 (MQ=255) cccGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTACGAGCCG‑GTTGCCTGATGCg > 1:26563380/1‑67 (MQ=255) ccGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCG‑GTTGCCTGATGCGAc > 1:6656192/1‑68 (MQ=255) ccGTAGGTGGGATAAGGCGGTTACGCCGCATCCGACATCCACCGTCCGAGCCG‑GTTGCCTGATGCGAc < 1:28387223/68‑1 (MQ=255) gTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCG‑GTTGCCTGATGCGAc > 1:32009339/1‑66 (MQ=255) gTAGGTCGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCG‑GTTGCCTGATGCGACGc < 1:9375490/68‑1 (MQ=255) aGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCG‑GTTGCCTGATGCGACGCt < 1:1515357/67‑1 (MQ=255) ggTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCG‑GTTGCCTGATGCGACGCTg > 1:28187315/1‑67 (MQ=255) ggTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCG‑GTTGCCTGATGCGACGCTg > 1:25433044/1‑67 (MQ=255) ggTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTACGAGCCG‑GTAGCCTGATGCGACGCTg > 1:8281412/1‑67 (MQ=255) gTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCG‑GTTGCCTGATGCGACGCTGgc > 1:39498405/1‑68 (MQ=255) ttGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCG‑GTTGCCTGATGCGACGCTGgc > 1:19506739/1‑67 (MQ=255) ttGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCG‑GTTGCCTGATGCGACGCTGgc > 1:30631812/1‑67 (MQ=255) ggATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCG‑GTTGCCTGATGCGACGCTGGcgcg < 1:4837937/68‑1 (MQ=255) ggAGAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCG‑GTTGCCTGATGCGACGCTGGcgcg < 1:167761/68‑1 (MQ=255) aTAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCG‑GTTGCCTGATGCGACGCTGGcgcg > 1:33160771/1‑66 (MQ=255) tAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCG‑GTTGCCTGATGCGACGCTGGCGCGTCt > 1:16999689/1‑68 (MQ=255) tAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCG‑GTTGCCTGATGCGACGCTGGCGCGTCt > 1:31080665/1‑68 (MQ=255) tAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCG‑GTTGCCTGATGCGACGCTGGCGCGTCt > 1:22106305/1‑68 (MQ=255) aaGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCG‑GTTGCCTGATGCGACGCTGGCGCGtggt > 1:16599942/1‑65 (MQ=255) aGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCG‑GTTGCCTGATGCGACGCTGGCGCGTCTTa < 1:594461/68‑1 (MQ=40) aGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCG‑GTTGCCTGATGCGACGCTGGCGCGTCTTa < 1:21829318/68‑1 (MQ=40) gCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCG‑GTTGCCTGATGCGACGCTGGCGCGTCTTATc > 1:24904564/1‑68 (MQ=40) gCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCG‑GTTGCCTGATGCGACGCTGGCGCGTCTTATc > 1:12243618/1‑68 (MQ=40) gCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCG‑GTTGCCTGATGCGACGCTGGCGCGTCTTATc > 1:26695446/1‑68 (MQ=40) gCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCG‑GTTGCCTGATGCGACGCTGGCGCGTCTTATc > 1:36608776/1‑68 (MQ=40) gCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCG‑GTTGCCTGATGCGACGCAGGCGCGTCGTATc > 1:33870607/1‑68 (MQ=255) cGGTTACGCCGCATCCGACATCCAACGTCCGAGCCG‑GTTGCCTGATGCGACGCTGGCGCGTCTTATCa > 1:2995917/1‑68 (MQ=40) ttACGCCGCATCCGACCTACAACGTCCGAGCCG‑GTTGCCTGATGCGACGCTGGCGCGTCTTATCAgg < 1:27387458/67‑1 (MQ=255) ttACGCCGCATCCGACATCCAACGTCCTAGCCG‑GTTGCCTGATGCGACGCTGGCGCGTCTTATCAgg < 1:17352228/67‑1 (MQ=255) ttACGCCGCATCCGACATCCAACGTCCGAGCCG‑GTTGCCTGATGCGACGCTGGCGCGTCTTATCAgg < 1:29669984/67‑1 (MQ=39) ttACGCCGCATCCGACATCCAACGTCCGAGCCG‑GTTGCCTGATGCGACGCTGGCGCGTCTTATCAgg < 1:30454944/67‑1 (MQ=39) ttACGCCGCATCCGACATCCAACGTCCGAGCCG‑GTTGCCTGATGCGACGCTGGCGCGTCTTATCAgg < 1:5658848/67‑1 (MQ=39) ttACGCCGCATCCGACATCCAACGTCCGAGCCG‑GTTGCCTGATGCGACGCTGGCGCGTCTTATCAgg < 1:8157194/67‑1 (MQ=39) ttACGCCGCATCCGACATCCAACGTCCGAGCCG‑GTTGCCTGATGCGACGCTGGCGCGTCTTATCAgg < 1:9767058/67‑1 (MQ=39) ttACGCCGCATCCGACATCCAACGTCCGAGCCG‑GTTGCCTGATGCGACGCTGGCGCGTCTTATCAgg < 1:3236976/67‑1 (MQ=39) ttACGCCGCATCCGACATCCAACGTCCGAGCCG‑GTTGCCTGATGCGACGCTGGCGCGTCTTATCAgg < 1:4538124/67‑1 (MQ=39) ttACGCCGCATCCGACATCCAACGTCCGAGCCG‑GTTGCCTGATGCGACGCTGGCGCGTCTTATCAgg < 1:32694407/67‑1 (MQ=39) ttACGCCGCATCCGACATCCAACGTCCGAGCCG‑GTTGCCTGATGCGACGCTGGCGCGTCTTATCAgg < 1:329435/67‑1 (MQ=39) ttACGCCGCATCCGACATCCAACGTCCGAGCCG‑GTTGCCTGATGCGACGCTGGCGCGTCTTATCAgg < 1:33505596/67‑1 (MQ=39) ttACGCCGCATCCGACATCCAACGTCCGAGCCG‑GTTGCCTGATGCGACGCTGGCGCGTCTTATCAgg < 1:34768501/67‑1 (MQ=39) ttACGCCGCATCCGACATCCAACGTCCGAGCCG‑GTTGCCTGATGCGACGCTGGCGCGTCTTATCAgg < 1:35726869/67‑1 (MQ=39) ttACGCCGCATCCGACATCCAACGTCCGAGCCG‑GTTGCCTGATGCGACGCTGGCGCGTCTTATCAgg < 1:29437813/67‑1 (MQ=39) ttACGCCGCATCCGACATCCAACGTCCGAGCCG‑GTTGCCTGATGCGACGCTGGCGCGTCTTATCAgg < 1:35992713/67‑1 (MQ=39) ttACGCCGCATCCGACATCCAACGTCCGAGCCG‑GTTGCCTGATGCGACGCTGGCGCGTCTTATCAgg < 1:38092514/67‑1 (MQ=39) ttACGCCGCATCCGACATCCAACGTCCGAGCCG‑GTTGCCTGATGCGACGCTGGCGCGTCTTATCAgg < 1:37850430/67‑1 (MQ=39) ttACGCCGCATCCGACATCCAACGTCCGAGCCG‑GTTGCCTGATGCGACGCTGGCGCGTCTTATCAgg < 1:13358342/67‑1 (MQ=39) ttACGCCGCATCCGACATCCAACGTCCGAGCCG‑GTTGCCTGATGCGACGCTGGCGCGTCTTATCAgg < 1:13977825/67‑1 (MQ=39) ttACGCCGCATCCGACATCCAACGTCCGAGCCG‑GTTGCCTGATGCGACGCTGGCGCGTCTTATCAgg < 1:14189215/67‑1 (MQ=39) ttACGCCGCATCCGACATCCAACGTCCGAGCCG‑GTTGCCTGATGCGACGCTGGCGCGTCTTATCAgg < 1:14879165/67‑1 (MQ=39) ttACGCCGCATCCGACATCCAACGTCCGAGCCG‑GTTGCCTGATGCGACGCTGGCGCGTCTTATCAgg < 1:15587893/67‑1 (MQ=39) ttACGCCGCATCCGACATCCAACGTCCGAGCCG‑GTTGCCTGATGCGACGCTGGCGCGTCTTATCAgg < 1:20045427/67‑1 (MQ=39) ttACGCCGCATCCGACATCCAACGTCCGAGCCG‑GTTGCCTGATGCGACGCTGGCGCGTCTTATCAgg < 1:21252324/67‑1 (MQ=39) ttACGCCGCATCCGACATCCAACGTCCGAGCCG‑GTTGCCTGATGCGACGCTGGCGCGTCTTATCAgg < 1:13145578/67‑1 (MQ=39) ttACGCCGCATCCGACATCCAACGTCCGAGCCG‑GTTGCCTGATGCGACGCTGGCGCGTCTTATCAgg < 1:11768458/67‑1 (MQ=39) ttACGCCGCATCCGACATCCAACGTCCGAGCCG‑GTTGCCTGATGCGACGCTGGCGCGTCTTATCAgg < 1:1121631/67‑1 (MQ=39) ttACGCCGCATCCGACATCCAACGTCCGAGCCG‑GTTGCCTGATGCGACGCTGGCGCGTCTTATCAgg < 1:25760498/67‑1 (MQ=39) ttACGCCGCATCCGACATCCAACGTCCGAGCCG‑GTTGCCTGATGCGACGCTGGCGCGTCTTATCAgg < 1:270761/67‑1 (MQ=39) ttACGCCGCATCCGACATCCAACG‑CCGATCCGTGATGCCTTAACCCCCGATGGCGCGTCTTATCAgg < 1:28717943/67‑1 (MQ=2) ttACGCCGCATCCGACATCAAACGTCCGAGCCG‑GTTGCCTGATGCGACGCTGGCGCGTCTTATCAgg < 1:2371775/67‑1 (MQ=255) tgaCGCCGCATCCGACATCCAACGTCCGAGCCG‑GTTGCCTGATGCGACGCTGGCGCGTCTTATCAgg < 1:10034626/65‑1 (MQ=25) tACGCCGCATCCGACATCCAACGTCCGAGCCG‑GTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGc < 1:13740768/67‑1 (MQ=37) tACGCCGCATCCGACATCCAACGTCCGAGCCG‑GTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGc < 1:33384486/67‑1 (MQ=37) aCGCCGCATCCGTCATCCAACGTCCGAGCCG‑GTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCt < 1:34142266/68‑1 (MQ=25) aCGCCGCATCCGACATCCAACGTCCGAGCCG‑GTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCt > 1:27753651/1‑68 (MQ=35) aCGCCGCATCCGACATCCAACGTCCGAGCCG‑GTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCt < 1:25944604/68‑1 (MQ=35) aCGCCGCATCCGACATCCAACGTCCGAGCCG‑GTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCt < 1:1972460/68‑1 (MQ=35) cgccgcATCCGACATCCAACGTCCGAGCCG‑GTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCt > 1:2074903/1‑67 (MQ=35) cgcATCCGACATCCAACGTCCGAGCCG‑GTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTaca > 1:39170926/1‑67 (MQ=35) gcATCCGACATCCAACGTCCGCGCCG‑GTTGCCTGATGCTACGCTGGAGAGTCTTATCAGGCCTACAcc < 1:34509848/68‑1 (MQ=11) gcATCCGACATCCAACGTCCGAGCCG‑GTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACAcc < 1:7125666/68‑1 (MQ=35) gcATCAGACATCCAACGTCCGACCCG‑GTTGCCTGATGCGACGCTGGAGCGTCTTATCAGGCCTACAcc < 1:2469036/68‑1 (MQ=11) aTCCGACATCCAACGTCCGAGCCG‑GTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGc < 1:35182287/68‑1 (MQ=35) aTCCGACATCCAACGTCCGAGCCG‑GTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGc < 1:18347072/68‑1 (MQ=35) aTCCGACATCCAACGTCCGAGCCG‑GTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGc < 1:16020135/68‑1 (MQ=35) aTCCGACATCCAACGTCCGAGCCG‑GTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGc < 1:30891667/68‑1 (MQ=35) aTCCGACATCCAACGTCCGAGCCG‑GTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGc < 1:6311852/68‑1 (MQ=35) aTCCGACATCCAACGTCCGAGCCG‑GTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGc < 1:3883975/68‑1 (MQ=35) aTCCGACATCCAACGTCCGAGCCG‑GTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGc < 1:12545799/68‑1 (MQ=35) aTCCGACATCCAACGTCCGAGCCG‑GTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGc < 1:32197899/68‑1 (MQ=35) aTCCGACATCCAACGTCCGAGCCG‑GTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGc < 1:39598883/68‑1 (MQ=35) aTCCGACATCCAACGTCCGAGCCG‑GTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGc < 1:4415650/68‑1 (MQ=35) aCATCCAACGTCCGAGCCG‑GTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGa > 1:17859219/1‑68 (MQ=35) cATCCAACGTCCGAGCCG‑GTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGa < 1:18791051/67‑1 (MQ=35) cATCCAACGTCCGAGCCG‑GTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGa < 1:20426458/67‑1 (MQ=35) tCCAACGTCCGAGCCG‑GTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACCCCGCTGTGAAGt > 1:7719228/1‑68 (MQ=25) tCCAACGTCCGAGCCG‑GTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGt > 1:520817/1‑68 (MQ=35) tCCAACGTCCGAGCCG‑GTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGt < 1:10617483/68‑1 (MQ=35) tCCAACGTCCGAGCCG‑GTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGt < 1:1031066/68‑1 (MQ=35) caccGTCCGAGCCG‑GTTGCCTGATGCGAAGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGc < 1:25125579/65‑1 (MQ=255) cAACGTCCGAGCCG‑GTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGc < 1:22516124/68‑1 (MQ=35) aCGTCCGAGCCG‑GTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCt > 1:30255955/1‑67 (MQ=35) cGTCCGAGCCG‑GTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTcc > 1:23008495/1‑68 (MQ=35) gTCCGAGCCG‑GTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTcc > 1:23983391/1‑67 (MQ=33) tCCGAGCCG‑GTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTGCa > 1:9051345/1‑67 (MQ=14) tCCGAGCCG‑GTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCa > 1:38234950/1‑67 (MQ=31) tCCGAGCCG‑GTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCa > 1:31529416/1‑67 (MQ=31) | ACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCG‑GTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCA > CP009273/2298230‑2298343 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |