| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 2298296 = | NA (NA) | 4 (0.010) | 4/98 | NT | 100% | noncoding (401/655 nt) | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences |
| ? | CP009273 | 2298427 = | 0 (0.000) | noncoding (532/655 nt) | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences | |||||
Only 100 of 105 total aligned reads displayed.
AGGCGGTTACGCCGCATCCGACATCTAACGCCCAAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCAAC > CP009273/2298360‑2298494 | ccttatccgacctacggggtggagcacttcacagcggtgtaggcctgataagacgcgccagcgtcgca > 1:24705916‑M2/68‑68 (MQ=255)ccttatccgacctacggggtggagcacttcacagcggtgtaggcctgataagacgcgccagcgtcgca > 1:24687862‑M2/68‑68 (MQ=255)ccttatccgacctacggggtggagcacttcacagcggtgtaggcctgataagacgcgccagcgtcgca > 1:5992467‑M2/68‑68 (MQ=255)ccttatccgacctacggggtggagcacttcacagcggtgtaggcctgataagacgcgccagcgtcgca > 1:33846983‑M2/68‑68 (MQ=255)ccttatccgacctacggggtggagcacttcacagcggtgtaggcctgataagacgcgccagcgtcgca > 1:15891148‑M2/68‑68 (MQ=255)ccttatccgacctacggggtggagcacttcacagcggtgtaggcctgataagacgcgccagcgtagca > 1:13095758‑M2/68‑68 (MQ=255)ccttatccgacctacggggtggagcacttcacagcggtgtaggcatgataagacgcgccagcgtcgca > 1:20725217‑M2/68‑68 (MQ=255)ccttatccgacctacggggtggagcacttcacagcggtgtagccctgataagacgagccagcgtagca > 1:15554364‑M2/68‑68 (MQ=255) cttatccgacctacggggtggcgcacttcacagcggtgtaggcctgataagacgcgccagcgtcgca > 1:21842716‑M2/67‑67 (MQ=255) cttatccgacctacggggtggcgcacttcacagcggtgtaggcctgataagacgcgccagcgtcgca > 1:38582290‑M2/67‑67 (MQ=255) cttatccgacctacggggtggagcacttcacagctgtgtaggcctgataagacgcgccagcgtcgca < 1:11732515‑M2/1‑1 (MQ=255) cttatccgacctacggggtggagcacttcacagcgttgtaggcatgataatacgcgccagcgtcgcAt > 1:20953464‑M2/67‑68 (MQ=255) cttatccgacctacggggtggagcacttcacagcggtgtaggcctgataagacgcgccagcgtcgca < 1:35408609‑M2/1‑1 (MQ=255) cttatccgacctacggggtggagcacttcacagcggtgtaggcctgataagacgcgccagcgtcgca > 1:20446641‑M2/67‑67 (MQ=255) cttatccgacctacggggtggagcacttcacagcggtgtaggcctgataagacgcgccagcgtcgca < 1:18768984‑M2/1‑1 (MQ=255) cttatccgacctacggggtggagcacttcacagcggtgtaggcctgataagacgcgccagcgtcgca < 1:18599731‑M2/1‑1 (MQ=255) cttatccgacctacggggtggagcacttcacagcggtgtaggcctgataagacgcgccagcgtcgca < 1:29737698‑M2/1‑1 (MQ=255) cttatccgacctacggggtggagcacttcacagcggtgtaggcctgataagacgcgccagcgtcgca > 1:25395092‑M2/67‑67 (MQ=255) cttatccgacctacggggtggagcacttcacagcggtgtaggcctgataagacgcgccagcgtcgca < 1:36695196‑M2/1‑1 (MQ=255) cttatccgacctacggggtggagcacttcacagcggtgtaggcctgataagacgcgccagcgtcgca < 1:37903376‑M2/1‑1 (MQ=255) cttatccgacctacggggtggagcacttcacagcggtgtaggcctgataagacgcgccagcgtcgca < 1:8334747‑M2/1‑1 (MQ=255) cttatccgacctacggggtggagcacttcacagcggtgtaggcctgataagacgcgccagcgtcgca < 1:14721207‑M2/1‑1 (MQ=255) cttatccgacctacggggtggagcacttcacagcggtgtaggcctgataagacgcgccagcgtcgca < 1:38184907‑M2/1‑1 (MQ=255) cttatccgacctacggcgtggagcacttcacagcggtgtaggcctgataagacgcgccagcgtcgca < 1:21870998‑M2/1‑1 (MQ=255) cttatccgaccgacggggtggagcacttcacagcggggtaggcctgataagacgcgccagcgtcgca < 1:18725080‑M2/1‑1 (MQ=255) cttatcccacctacggggtggagcacttcacagcggtgtaggcctgataagacgcgccagcgtcgca < 1:28826704‑M2/1‑1 (MQ=255) ctcatccgaccgacggggtggagcacctcacagcggtgtaggcctgataagacgcgccagcgtcgca < 1:15599639‑M2/1‑1 (MQ=255) ttatccgacctacggggtggagcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcATc < 1:26740417‑M2/3‑1 (MQ=255) tatccgacctacggggtggagcacttcacagcggtttaggcctgataagacgcgccagcgtcgcATc > 1:5918202‑M2/65‑67 (MQ=255) tatccgacctacggggtggagcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcATCa > 1:31706051‑M2/65‑68 (MQ=255) tatccgacctacggggtggagcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcATCa < 1:24357522‑M2/4‑1 (MQ=255) tatccgacctacggggtggagcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcATCa < 1:34604968‑M2/4‑1 (MQ=255) tatccgacctacggggtggagcacttcacagcggtgtaggcctgataagacgagccagcgtcgcATCa > 1:34257115‑M2/65‑68 (MQ=255) atccgacctacggggtggagcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcATCAg < 1:14977403‑M2/5‑1 (MQ=255) atccgacctacggggtggagcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcATCAg < 1:4655812‑M2/5‑1 (MQ=255) atccgacctacggggtggagcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcATCAg < 1:31989316‑M2/5‑1 (MQ=255) atccgacctacggggtggagcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcATCAg < 1:21635701‑M2/5‑1 (MQ=255) atccgacctacggggtggagcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcATCAg < 1:24897453‑M2/5‑1 (MQ=255) atccgacctacggggtggagcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcATCAg > 1:1810670‑M2/64‑68 (MQ=255) atccgacctacggggtggagcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcATCAg > 1:23536790‑M2/64‑68 (MQ=255) atccgacctacggggtggagcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcATCAg > 1:23620759‑M2/64‑68 (MQ=255) atccgacctacggggtggagcacttcacagcggtgtaggcctgataagacgcgccagcgtcgaATCAg > 1:26388202‑M2/64‑68 (MQ=255) tccgacctacggggtggagcacttcacagcggtgtaggccttataagaagagccagcgtcgcATCAg > 1:19514629‑M2/63‑67 (MQ=255) tccgacctacggggtggagcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcATCAgg < 1:185636‑M2/6‑1 (MQ=255) tccgacctacggggtggagcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcATCAgg < 1:3590002‑M2/6‑1 (MQ=255) tccgacctacggggtggagcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcATCAg > 1:13024204‑M2/63‑67 (MQ=255) tccgacctacggggtggagcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcATCAg > 1:21833572‑M2/63‑67 (MQ=255) tccgacctacggggtggagcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcATCAg > 1:2081386‑M2/63‑67 (MQ=255) tccgacctacggggtggagcacttcacagcggtgtaggcctgataagaagagccagcgtcgcATcac > 1:13352750‑M2/63‑66 (MQ=255) tccgacctacgggggggagcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcATCAgg < 1:9518685‑M2/6‑1 (MQ=255) tccgaccgacggggtggagcacttcccagcggtgtaggcctgataagacgcgccagcgtcgcATCAgg < 1:24092919‑M2/6‑1 (MQ=255) ccgacctacggggtggagcacttcacagctgtgtaggcctgataagacgcgacagattagcATCAGGc > 1:31314847‑M2/62‑68 (MQ=255) ccgacctacggggtggagcacttcacagcggtgtaggccttataagacgagcccgagtcccATCAgg > 1:4268305‑M2/62‑67 (MQ=255) ccgacctacggggtggagcacttcacagcggtgtaggcctgataagacgcgcccgcgtcgcATAAGGc > 1:3495840‑M2/62‑68 (MQ=255) ccgacctacggggtggagcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcATCAGGc > 1:33104221‑M2/62‑68 (MQ=255) ccgacctacggggtggagcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcATCAGGc > 1:18241646‑M2/62‑68 (MQ=255) ccgacctacggggtggagcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcATCAGGc > 1:24615216‑M2/62‑68 (MQ=255) ccgacctacggggtggagcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcATCAGGc > 1:36011004‑M2/62‑68 (MQ=255) ccgacctacggggtggagcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcATCAGGc > 1:16592707‑M2/62‑68 (MQ=255) ccgacctacggggtggagcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcATCAGGc < 1:15030381‑M2/7‑1 (MQ=255) ccgacctacggggtggagcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcATCAGGc < 1:14614136‑M2/7‑1 (MQ=255) ccgacctacggggtggagcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcATCAGGc > 1:38657662‑M2/62‑68 (MQ=255) ccgacctacggggtggagcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcATCAGGc < 1:14565689‑M2/7‑1 (MQ=255) ccgacctacggggtggagcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcATCAGGc > 1:495131‑M2/62‑68 (MQ=255) ccgacctacggggtggagcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcATCAGGc > 1:5690737‑M2/62‑68 (MQ=255) ccgacctacggggtggagcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcATCAGGc > 1:13005336‑M2/62‑68 (MQ=255) ccgacctacggggtggagcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcATCAGGc > 1:6545076‑M2/62‑68 (MQ=255) ccgacctacggggtggagcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcATCAGGc > 1:32765783‑M2/62‑68 (MQ=255) ccgacctacggggtggagcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcATCAGGc > 1:33065777‑M2/62‑68 (MQ=255) ccgacctacggggtggagcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcATCAGGc > 1:27864389‑M2/62‑68 (MQ=255) ccgacctacggggtggagcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcATCAGGc > 1:28523780‑M2/62‑68 (MQ=255) ccgacctacggggtggagcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcATCAGGc > 1:29391111‑M2/62‑68 (MQ=255) ccgacctacggggtggagcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcATCAGGc > 1:20892953‑M2/62‑68 (MQ=255) ccgacctacggggtggagcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcATCAGGc > 1:31518424‑M2/62‑68 (MQ=255) ccgacctacggggtggagcacttcacagcggtgtaggcctgataagacgcgccagcgtagcATCAgg > 1:22685130‑M2/62‑67 (MQ=255) ccgacctacggggtggagcacttcacagcggtgtaggcctgataagacgcgccagactcccAtcacg > 1:20097873‑M2/62‑65 (MQ=255) ccgacctacggggtggagcacttcacagcggtgtaggcctgataagacgagccagcgtcgcATCAGGc > 1:12775609‑M2/62‑68 (MQ=255) ccgacctacggggtggagcacttcacagcggtgtaggcctgataagaagcgccagagtcgcATCAGGc > 1:30953996‑M2/62‑68 (MQ=255) ccgacctacggggtggagcacttcacagcggtgtaggcctcataagacgcgccagcgtcgcATCAGGc > 1:36502771‑M2/62‑68 (MQ=255) ccgacctacggggtggagcacttcacagcggtgtaggccagataagaagagccagagtcccATCAGGc > 1:132032‑M2/62‑68 (MQ=255) ccgacctacggggtggagcacttcacagcggtgtagccctgataagacgagccagcttcgcATAAGGc > 1:4473406‑M2/62‑68 (MQ=255) ccgacctacggggtggagcacttcacagcggtgaagccctgataagacgcgccagcgtcgcATCAGGc > 1:33225469‑M2/62‑68 (MQ=255) cgacctacggggtggagcacttcacagcggtgtaggcctgataagaagcgccagagtcgcATCAGGcc > 1:18378254‑M2/61‑68 (MQ=255) cctacggggtggagcacttcacagcggtgtaggcctgataagacccgccaccgtcgcATCaggccacc > 1:32141634‑M2/58‑65 (MQ=255) cctacggggtggagcacttcacagcggtgtaggcctgataagaagcgacatagtcgcATCAggccac > 1:38746620‑M2/58‑65 (MQ=255) gggggggagcacttcacagcggtgtaggcctgataacacgcgccagcgtcgcATCAGGCCTACACCGc < 1:6354350‑M2/16‑1 (MQ=255) acttcacagcggtgtaggcctgataagacgcgccagcgtcgcATCAgg > 1:572575‑M2/43‑48 (MQ=255) tcacagcggtgtaggcctgataagacgcgccagcgtcgcCTCAGGCCTACACCGCGGTGAAGTGCTc > 1:34538308‑M2/40‑67 (MQ=255) ggtgtaggcctgataagacgcgccagcgtcgcATCAGGCCTACCCCGCTGTGAAGTGCTCCCCCCCGt > 1:5669540‑M2/33‑68 (MQ=255) agacgcgccagcgtcgcATCAGGCCTACACCGCTGTGAAGTGCTCCCCCCCGTAGGTTGGTTAAGGCg > 1:36935492‑M2/18‑68 (MQ=255) ttATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCa < 1:22035163/68‑1 (MQ=31) ttATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCa < 1:29243616/68‑1 (MQ=31) ttATCAGGCCTACACCGCTGTGAAGTGCGCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCa < 1:22989390/68‑1 (MQ=14) ttATCAGGCCTACACCGCTGTGAAGAGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCa < 1:37467140/68‑1 (MQ=14) tATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCaa < 1:15945882/68‑1 (MQ=33) ATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCAAc < 1:22443804‑M2/68‑1 (MQ=255) ATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCAAc < 1:2148080‑M2/68‑1 (MQ=255) ATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCAAc < 1:17357548‑M2/68‑1 (MQ=255) ATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCAAc < 1:19960737‑M2/68‑1 (MQ=255) ATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCAAc < 1:12821665‑M2/68‑1 (MQ=255) | AGGCGGTTACGCCGCATCCGACATCTAACGCCCAAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCAAC > CP009273/2298360‑2298494 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |